Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------DDF1                                                ------>NtERF2                                               --------->At1g77200                                               --------->DEAR4(1)                                               --------->RAP2.3(3)                                               --------->DREB2C(2)                                               ----------->HVH21                   --------->ANAC46            <---------ETT(1)                   --------->ANAC58            --------->DEAR3(1)            <---------TOE2(3)                 --------->RAP2.3(1)            --------------->AtSPL3       --------->KAN4(2)      --------------->AGL15              --------->YAB1                            xxxxxxxxxxxxxxxxxx      <---------------AGL15              <---------ICU4                    --------->ATHB12    ----------------->AGL3              --------->ICU4                   >>>>>>>>>>>>>>>>>LFY ------TEIL <---------------AtSPL8      <---------KAN4(1)               --------->ANAC58 ---------GT1      --------->ANAC58     --------->KAN4(1)               --------->ANAC46 ---->CCA1(2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    --------->ANAC58 --->ARR11(3)    <---------ALFIN1      <---------KAN4(2)              --------->YAB1 ----ARR11(3)   <-------TEIL        ----------->GT1        <------ZmHOX2a(1)    <<<<<<<<<<<<<<<<<LFY --->ARR10---------->DOF2        ---------->DOF2<---------RAP2.6(3) <-----------HVH21   atacatttcaaataaaggtacacaccatatggagagaaaggaataatcgccgacatggtgaggagaaccctatcacaccattggccattggaaacaacat  16980700                                                                                           <---------AHL20(2)                                                                                           <---------YAB1                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 --------->ZAT6                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <----------DOF2                                                                            <---------ANAC58  <------                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           --------->GLK1(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->ATHB12  <---------ANAC58---------          --------->ANAC58                 <---------GLK1(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <x         <-------TEIL<-----------GT1   --------->ANAC58  <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------HSFB2a(1)   <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxx>smallRNA(fl3) --------->MYB46(3) --------->ANAC58--------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   cgacaaaaacgttcgcaaacgaatcacccttcttcagaaacaaggaaacccaaaatatgatgatttgtttgtattttggctttccactaggttttaattg  16980800       <------ZmHOX2a(1) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxsmallRNA(le3)                                     <---------ARR11(3) xxxxxx>smallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxsmallRNA(si3)      --------->MYB46(3)             --------->ICU4 xxxxsmallRNA(l2)      --------->MYB52(1)               <---------YAB1 xxxsmallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(2)         --------->AtLEC2 xsmallRNA(fl3)      <---------MYB59         <xxxxxxxxxxxxxxxxsmallRNA(i)<---------AHL20(2) ---WOX13(1)       ------->TEIL      ---------->DOF2  --------->YAB1     --------->AHL20(2) >ATHB12    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------REM1(1)   <---------YAB1   <-------TEIL   - xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)    -----   gcatagctaggacaaagtatgagcctaacaactcaaacaagaagcacttgatgtaaccatgatttttttgatgaataaaattttgcattcattcaaaaaa  16980900                                                         <---------ALFIN1                                                         --------->AtMYB61                                                       ------>NtERF2                                                      --------->ANAC46                        -------                                                 --------->MYB52(1)                          <-------                                    --------->LBD16--------->ANAC46                      ---------->DOF2                                <---------ARR14(2) --------->ANAC58                      --------->AHL20(2)         --------->AHL20(2)     --------->ARR14(2) --------->ANAC58                      ============ --------->AHL20(2)           ---------->DOF2 --------->ANAC58                      --------->MYB46(3) -------->AHL20(2)        --------->TOE2(3)   --------->ANAC46                      ------------>CBF ---->AHL20(2)            --------->TOE1(3)   --------->ANAC58          --------->ZAT14 <---------ATHB12   aaataaaaaaaaaaaataaaaccgaaaaccctaaaatccgaaaacaccaagaaacgacaccactccctatgaactggactctagtaaccaataaaacgac  16981000                           <---------TGA1a                           --------->O2                  <---------MYB52(1)                           =====================bZIP_DOF --------->DOF5.7(2)                           --------->TGA1a              --------->TOE2(3)                          --         <----------DOF2   <---------O2                 --------->TOE1(3)                    --------  ===================================bZIP_DOF        <---------ARR11(3) --------->ARR14(2)   <-------  ---------->DOF2          =============================MYC_MYB         --------->MYB52(1)   -------- <------ZmHOX2a(1)  --------->ANAC46 ---------->DOF2 --------->ARR11(3) <---------ARR14(2)  <-------- ---->RAV1(1)<---------AtMYB61  ----------->GT1 ------->GAMYB <----------ID1            ---------->DOF2 ---ID1  ============================bZIP_DOF --------->At4g35610     *TSS     ---------->DOF2     <- ====================================bZIP_DOF--------->MYB52(1)      --------->YAB1 <----------ID1 <-   agaggaaagagcgttttggtagacgacccaagtgagataaaaaggcccaactgaatatcgttaagggccaagaataactgcaaaagacgaaaaagaatct  16981100                                                  <---------ANAC58                                                  <------MYB83                                    ---                                                  <---------ANAC58                             ------                                                  <------MYB46(1)                           <--------                                                 <---------MYB46(3)                         <--------                                                 --------->MYB59                           <---------DEAR3(1)                                               <--------P                               --------->ARR14(2)                                              <-------GAMYB                             <---------ARR14(2)                                              <---------ANAC58                         --------->ATERF1(1)                                              <---------ANAC58                         <------NtERF2                                             <------MYB46(1)                          ------>NtERF2                                             <------MYB83                             <---------ATERF1(1)                                             <---------MYB46(3)                       <---------ERF1 ------->ZAT14                              <---------AtMYB61                         <---------RAP2.3(1) ->ARR14(2)                              <---------ARR14(2)                          <---------RAP2.6(2) --ARR14(2)                              --------->ARR14(2)                          <---------RAP2.3(2) ->GLK1(2)                            ----------------->AGL1                         <---------DEAR3(1) -GLK1(2)                        <---------ATHB12<------MYB46(1)                     <---------RAP2.3(3) --------ZAT14    <---------ANAC58    ----------------->AG--------->HSFB2a(2)        <---------ANAC46 --------ZAT18    <---------ANAC58<---------ICU4 <------MYB83                       --------->RAP2.6(3)   gttcactctctctctctctggctcgctcgctctcaatctttccgatttggttgggttcttctccaactccaagtctctgcgaaaatggcggcttcggtgc  16981200                                                                            --------->ARR14(2)                                                                         <---------ANAC58                                       <---------ALFIN1                  <---------ANAC46                              --------->ANAC58                       <------NtERF2                              --------->ANAC58                       --------->At4g35610                            ---------->DOF2                          <---------At4g35610                          --------->LBD16                        <---------SPL7                         --------->ANAC46                     >>>>>>>>>>GATA-1                    ---                         <---------HSFB2a(2)                 --------->YAB1 <---------ARR14(2)   ---- ----->P                 --------->HSFB2a(2)      --------->ANAC46 --------->SPL7                ---- --->ABI4(2)            <---------LBD16--------->DEAR3(1)   <---------YAB1  <-----------ARR10   <---- -ANAC58         <---------ALFIN1   <---------ALFIN1   --------->ANAC58  <---------ANAC58       ----- -ANAC58      --------->AtMYB61    --------->MYB46(3)  --------->ANAC58 ------>NtERF2          <-----   aacctgcatgcttagacctccacttctccggaaagcatccaccgcttcttaaacacaacgctattatcgtccgctgcgtttcttctccaaatgtaattcc  16981300 <---------At4g35610             <---------ICU4 --------->At4g35610            <---------YAB1                         <---------ANAC58 --------->ZAT2                --------->TOE2(3)                  <---------CCA1(2) <---------ZAT2               --------->YAB1                    <---------ANAC58 ------>LBD16              <---------bZIP60(1)                  <---------ANAC58    <---------DEAR3(2) ----->LBD16               --------->bZIP60(1)              <---------MYB46(3)      <------MYB46(1) ----->ANAC46              --------->GLK1(1)               --------->ALFIN1         <------MYB83 -----HSFB2a(2)       ----------->RAV1(2)          --------->At4g35610 <---------ANAC46 ---->HSFB2a(2)      ------>NtERF2           ----------->HVH21 <-------TEIL         <---------MYB46(3) ----LBD16           <------NtERF2       ------->TEIL  ---------->DOF2 <---------ANAC58   cgaagctgactccatctctggtccgcctgatatcatcaatacgaaccgtgaccagcgcaaagtggttcgtatcgcttgggagaagttggttcgatggtct  16981400                                          --------->ANAC46                                          --------->ANAC58                                          --------->ANAC58                                       --------->ARR14(2)            ---------->DOF2            <---------ARR14(2)        --------->ANAC58             <---------SPL7        --------->ANAC58             --------->ZAT14                                  <----------DOF2       --------->ZAT18               <---------ZAT18                                 <---------ANAC58       <---------ZAT18               --------->ZAT18                   --------->YAB1<---------ANAC58      <---------ANAC58               <---------ZAT14    --------->ARR11(3)     <---------ANAC58      <---------ANAC58              <---------ANAC58    <-----------GT1--------->TOE2(3)      <---------ANAC46              <---------ANAC58    <---------ARR11(3)     <---------ANAC46  <----------DOF2                  --------------->AtSPL3           <----------DOF2  <---------ANAC46 --------->MYB52(2)                --------------->AtSPL8       <----------DOF2<---------ANAC58 -----   cgttctttgcgcgctaaagctaaaaccgatgttcttgagcgtactcgcaaggttttattatcttcactttctttcttaatttcgtttgcgttttggagaa  16981500                                                       <---------ZAT14                                                 <------MYB46(1)                                                 <------MYB83                                                --------->MYB59                    <---------TOE1(3)           --------->MYB46(2)                    --------->MYB59             <---------------AtSPL3                    <---------TOE2(3)           <---------MYB46(3)          <---------LBD16                       --------->MYB111(1)      --------->ARR14(2)                       <---------MYB55(1)    <---------REM1(1)      <---------ARR14(2) <-------GAMYB        <---------MYB52(1)<---------At4g35610      --------->GLK1(2) <---------MYB46(3)  --------->MYB52(2)  --------->At4g35610             -----     <---------GLK1(2)  --------->MYB111(2)<-------TEIL--------->ZAT14  ------->TEIL           <----- ---->GLK1(2)   <----------DOF2         <---------MYB46(3)    <---------RAP2.3(3) ---------->DOF2   tttgaaagaatctgggggtttttaggttgttgttcttggtggaggttcgtttggtactgcaatggctgctcatgtagctagaaggaaagagggattagag  16981600  Previous    Next  AGI:  At2g40680.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 16979907    to: 16980797    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g40690.1    Description:  GLY1 (SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1); glycerol-3-phosphate dehydrogenase (NAD+). similar to glycerol-3-phosphate dehydrogenase (NAD+) / GPDH [Arabidopsis thaliana] (TAIR:AT5G40610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41518.1); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; (InterPro:IPR011128); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Dehydrogenase, multihelical; (InterPro:IPR013328); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain NAD-dep Range:  from: 16981070    to: 16983536    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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