Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------ICU4                                                                                          <---------YAB1                                                                                <---------ANAC58                                                                                <---------ANAC46                                                                          --------->ARR11(3)                                                 <---------ANAC46         <---------ARR11(3)                                        <---------ATHB12                 <---------GLK1(1)--------->ICU4 ----->ZAT14   --------->ANAC46   --------->ARR14(2)              <---------MYB46(3)    --------->YAB1 ------ZAT14   <----------ID1     <---------ARR14(2)          <----------DOF2   <---------ANAC58   atacttgagaaacaactacgacaaggctaatagcagtatccaatctagattacgcagaaataagcttttggttagaaatcttacttgtagtcatcatttt  16972400                                                                                        ---------->DOF2                                                                                       --------->AtMYB61                                                                                    --------->AtMYB61                                                                                   <-----------------AGL1                                                                                   --------->MYB46(3)                                                                               <---------At4g35610                                                                              <---------RAP2.3(1)                                                                             <---------ANAC46         --------->ANAC58                                                    <---------RAP2.6(2)         --------->ANAC58                      <---------------AGL15        <---------LBD16         --------->ANAC46       --------->ARR14(2)            --------->MYB52(1)  -------->P   ------->TEIL                 <---------ARR14(2)       ---------->DOF2 <---------ANAC58   --------->GLK1(1)    <-----------RAV1(2)    --------------->AGL15     <---------ANAC58       <----   ttatgaactccacgacaatttccttctcaggctggatttgaagcatcttcaatatgaggcaaaggaacggagtaggcttgcggctaccaccaaaggtacc  16972500                                           <-----------HVH21                                           --------->LBD16                                          <---------O2                                          --------->TGA1a                                          <---------TGA1a                                          --------->O2                                          <---------ANAC46                     ----------->GT1                                        --------->LBD16                        <---------YAB1                                        ------>NtERF2                        <---------At4g35610                                       --------->DEAR3(1)                    --------->At4g35610                                       --------->ANAC46                     --------->ALFIN1                             --------->MYB46(3)    ---------->DOF2         --------->ZAT18                     <----------DOF2  --------->ATERF1(1)            ---------->DOF2           --------->At4g35610        <---------LBD16              --------->HSFB2a(2)           <---------At4g35610--------->AtMYB61   --------->AtMYB61<---------HSFB2a(2)           --------->ZAT2 --------->ZAT18 ====================bZIP_DOF    --------->ALFIN1 <---------SPL7           <---------ZAT2 <---------ZAT18 ====================bZIP_DOF --------->DAG2--------->ARR11(3) -----ALFIN1         ===============================bZIP_DOF    ------>ZmHOX2a(1)    <---------ARR11(3)   acctagatggtcgagctccatagctttgtccaccaatgtctccgccgtgagaccaaagcactgctccttccaaaaggtgtgctgataaatcttcgttcgc  16972600                          <---------ANAC58                          <---------ANAC58                     <---------MYB52(1)                         <-------TEIL                  ------>ZmHOX2a(2)                       <---------GLK1(2)              <------ZmHOX2a(2)                       <---------ARR14(2)            --------->ARR14(2)                       --------->ARR14(2)            ------->TEIL                     --------->LBD16                 <---------AGP1                   <---------LBD16                   <---------ARR14(2)               --------->ARR14(2)                    <-----------ARR10 <---------ICU4       ---------               --------->GLK1(2)                --------->MYB52(1)     --------->ATHB51    <---------GLK1(2)              --------->ARR14(2)=============================HOX2a_HOX2a                --------->YAB1              <---------GLK1(2) ------>ZmHOX2a(1)    --------->GLK1(2)--------->ICU4 --------->WOX13(1)              <---------ARR14(2)==============================HOX2a_HOX2a        ----------->GT1         -------->P<---------At4g35610    <----------DOF2    <---------YAB1 ----------->RAV1(2)   ---   acaatcttctctaccagattctgcggattcgttcctcttatattctttgccaacggatctgttctgtttgccattatcgcctgaagttaatcagaaactg  16972700                                            <---------ZAT14                                            --------->ZAT14                                           <-----------HVH21                                           <----------DOF2                                         ------>NtERF2                                         --------->At4g35610                                        --------->DEAR3(1)                                       --------->RAP2.3(1)                                       <------NtERF2                                      <---------ATERF1(1)                                      <---------RAP2.3(1)                               <------NtERF2                                      ------>NtERF2                                     --------->ATERF1(1)                                     --------->O2                                      <---------RAP2.6(3)                                     <---------O2--------->ZAT14                       ------>NtERF2                                     --------->ANAC58                                  <-----------HVH21                                     --------->DEAR3(1)                         ------->TEIL                                     <---------DEAR3(1)                         --------->ARR14(2)                                     --------->ANAC46                           <---------ARR14(2)                                     --------->ANAC58    --------->ARR14(2)  --------->ANAC58                                     --------->bZIP60(1) <---------ARR14(2)  --------->ANAC58                                     <---------bZIP60(1)<------NtERF2        --------->ANAC46                                    --------->ATERF1(1)--------->LBD16--------->At4g35610 ---------->DOF2     --------->YAB1<---------ATERF1(1)--------->RAP2.6(2)   --------->LBD16<------NtERF2 >ARR14(2)    <------NtERF2 <-----------HVH21    ---------->DOF2      --------->ZAT2<---------At5g28300 ------>TOE2(3)     --------->ICU4----------->HVH21  <---------LBD16  <---------At4g35610<---------DEAR3(1)   cctcaaaggcctagtcgtcggaataataaacgtcgagcgacgccgcttcagtgaagccggaatcgatgaaacagcttccacgaatttgccgtcgtcgaag  16972800                                                            <--------ATHB1                                                            -------->HAHB4                                                            <---------ICU4                                                           --------->ICU4                                                           <---------ATHB12                                                           <---------YAB1                                                          <---------TOE2(3)                                                       <---------YAB1                                                    --------->AHL20(1)                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                    <---------AHL20(1)                                               <---------AHL20(1) <----------DOF2                       <---------ARR14(2)      --------->AHL20(2)<---------ANAC58                       --------->GLK1(2)   <---------AHL20(2) <---------WOX13(1)               <----------DOF2 ----------->GT1 <---------AHL20(2)<---------ANAC58            <---------ARR11(3)*TSS    <---------AHL20(2) --------->YAB1  <---------MYB46(3)      --------->ANAC58 --------->ARR14(2)  --------->AHL20(2)<------------CBF      --------->ANAC58<---------GLK1(2)   --------->AHL20(2)--------->ATHB12---------->DOF2      <---   acgaagacactctaggtctttgaagaatctgagaagttaattcatttattttattttattaatgattgctttcggtggtaaagcccatagtaagaacata  16972900                                                  <-------GAMYB                                                 --------->MYB46(2)                                                 --------->MYB111(1)               --------->ANAC58                                                 <---------MYB46(3)      --------->MYB46(2)                                                 --------->MYB111(2)     --------->MYB52(2)              <---------CCA1(2)                  --------->MYB55(2)      <---------MYB46(3)             --------->AHL20(1)                 <---------MYB55(1)     <---------MYB52(1)             <---------ARR11(3)                <---------MYB52(1) <------ZmHOX2a(1)--------->AtLEC2             <---------AHL20(2)               <-------GAMYB   <<<<<<<<<MYB98  --------->REM1(1)             <---------AHL20(1)               <-----------HVH21 --------->MYB59   --------->WOX13(1)             --------->ARR11(3)         <---------DOF5.7(2)   <---------MYB52(1) ---------->DOF2       --------->At4g35610              ---------->DOF2 <---------GLK1(1)--------->MYB111(1)       <---------At4g35610<---------YAB1--------->MYB52(1)   <-------GAMYB   <-------TEIL ------AHL20(2)--------->ARR11(3) ----------->GT1--------->MYB52(2)   <-------GAMYB--------->ANAC58   ttaatgggctgctaatatatctaggcccattatagatggagataacgccgttagttggaagtccgttaggaccgttagttacatcaagcaaaaaccctat  16973000           *TSS                                                                              --------       <---------ZAT14                                                            <---------TOE2(3)       --------->ZAT14                       <----------ID1                      <---------DOF5.7(2)    <------------CBF     <---------------------WRI1                             --------->WRKY12  --------->ARR11(3)  ---------->DOF2---------->DOF2               ---------->DOF2<------------------   cgaagaaattgcagtgtgttttcttacagcgaagagccccaaagagaagaacaaaatttcgaaaatagagaaagagaagaagttgacgatggattcaaag  16973100                  --------->At4g35610                  --------->ZAT2                    --------->ICU4       <---------YAB1                        ------>ZmHOX2a(2)     <---------At4g35610                    <------ZmHOX2a(2)     --------->At4g35610                   --------->ARR11(3)   <-----------RAV1(2)                     <---------ARR14(2)                         <---------DAG2  <---------At4g35610                      --------->ARR14(2)              ---------->DOF2        --- -->DOF2          <---------At4g35610 <----------DOF2          --------->At4g35610    <----------DOF2 ---WRI1     <----------DOF2  <---------ALFIN1 ------>ZmHOX2a(1)      --------->At4g35610         <--   gcgaagcagatgattctttcagctctctgcaaacacttctctttggatcctgtaagtattgaagaagatgacatctcaaaagcttctgcttttttgtgag  16973200          <---------ZAT2          --------->ZAT2          --------->At4g35610          <---------At4g35610                                                        <---------ATHB12        <--------P                                                         <---------ANAC58      <------MYB46(1)                                                      <---------ANAC58      <------MYB83                                                        <---------------AtSPL3   <---------ANAC58                                                       <---------MYB46(3)   <---------AtLEC2                                                       <---------------AtSPL8   <---------ANAC46         <---------ICU4                                --------->MYB59   <---------ANAC58        <---------YAB1                               <---------WOX13(1) <---------YAB1           --------->ARR11(3)                          --------->ATHB12 --------->WOX13(1) ------>ARR14(2)          <---------ARR11(3)                         <---------YAB1--------->GLK1(1) -------ARR14(2)         --------->YAB1      --------->MYB52(2)    <-----------------AGL1 --------->YAB1   gttttgcttggtagctgagtatgtgtatgatcattttttgaattagttagtggagaaaactcgaacattatctgattgggtactgaaatcaattagaaag  16973300  Previous    Next  AGI:  At2g40650.1    Description:  pre-mRNA splicing factor PRP38 family protein. similar to PRP38 [Medicago truncatula] (GB:ABN05680.1); contains InterPro domain PRP38 (InterPro:IPR005037) Range:  from: 16970397    to: 16972830    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g40660.1    Description:  tRNA-binding region domain-containing protein. similar to methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative [Arabidopsis thaliana] (TAIR:AT4G13780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41516.1); contains InterPro domain tRNA-binding region; (InterPro:IPR002547); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 16973011    to: 16976113    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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