Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                                    -                         ---------->DOF2                                                            -                        <---------WRKY12                                      ------>ZmHOX2a(1)    <-                        <---------WRKY38(1)                                   --------->LBD16    ----                      <-----------HVH21                                 <---------At4g35610      ----                  ---------->DOF2                                       --------->At4g35610     <----              <---------YAB1                <------ZmHOX2a(1)      --------->ANAC58          --------            <---------ICU4          ---------->DOF2                --------->ANAC46<---------ARR11(3) -------DOF2--------->YAB1      --------->YAB1       --------->YAB1--------->ANAC58--------->ARR11(3)   tttataatgtagaattataacaaaggtcaaagaaacataaaagagaggaatgaaatgataccctcatagacgctagcttcctgaacatctctaatagcag  16953100                                                                                  <---------ARR14(2)                                                                              --------->YAB1                                                                         ==========================HOX2a_HOX2a                                                                         ------>ZmHOX2a(2)                                                                        ===========================HOX2a_HOX2a                                                                       --------->AGP1                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                       <---------ARR11(3) ---------ZAT2                                                         <---------AGP1 ---------At4g35610                                                    <-----------ARR10 -------->At4g35610                                   <---------AHL20(2)--------->CCA1(2) -------->ZAT2                                        --------->AHL20(2)<------ZmHOX2a(2) --------ATERF1(1)                                  --------->AHL20(2) --------->ARR11(3) ------->RAV1(2)                            ====================================HOX2a_HOX2a ----->ATERF1(1)                            ===================================HOX2a_HOX2a  <------ZmHOX2a(1) -----ATERF1(1)         ------->TEIL        ------>ZmHOX2a(1)    --------->AtMYB61--------->ARR14(2) ->At4g35610   ------>ZmHOX2a(1)         ---------->ID1    <-----------GT1   <---------ATHB12   cctgctccacaatgttcctcacaatgaacctcttaatggccttgtcctatccaaatttatattaccaccacaagatctaatcaaaatccacataggagtt  16953200                                                                                     <---------ANAC55(1)                                                                                     <---------ANAC46                                                                                     --------->ANAC55(2)                                                                                     --------->TGA1a                                                                                     <---------O2                                                                                     <---------ANAC58                                                                                     <---------TGA1a                                                                                     <---------bZIP60(2)                                                                                     ================                                                                                     --------->O2                                                                       --------->At4g35610                                                              <---------ZAT2         <---------ANAC58                                                              <-------GAMYB         ----------->STF1                                                              =================================MYC_MYB                                                              --------->ZAT2      --------->WRKY12                                                            <-----------RAV1(2)   ----------->HVH21                                                            <------NtERF2       <-------GAMYB      <x                                                         <---------LBD16        ===============MYC_MYB             <---------WOX13(1)                   <------NtERF2        <---------At4g35610         <-           --------->ATHB12              --------->TOE1(3) --------->LBD16--------->ATHB12      <----         <---------WOX13(1)              --------->TOE2(3) ------>NtERF2 <---------YAB1        <-----       --------->ATHB12       <------ZmHOX2a(1)  ----------->RAV1(1)  --------->GLK1(2)     ------>ZmHOX2a(1)     <---------WOX13(1)    <------ZmHOX2a(1)     =======================RAV <---------WOX13(1)<------   actggagattgattgattggagaagagaaggaggaagagagtaccttagggcagcatttgccgcagttggagcatctgattgggttgacgtgtcctctgt  16953300            <---------ALFIN1                                                                        -           <---------MYB55(2)                                                                       - <---------ANAC58                                                                                  -- <---------ANAC58                                          <------ZmHOX2a(2)                   ------ ==MYC_MYB --------->MYB46(3)                             <---------ARR11(3)      <---------YAB1  --- xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <<<<<<<<<<<<<<<<<LFY             --------->YAB1 ------ --------YAB1                               --------->ANAC58               <----------DOF2     ------ -----MYB52(1)               ---------->DOF2--------->ANAC46              --------->YAB1     -------- --GAMYB ------>ZmHOX2a(1)<----------DOF2   --------->ANAC58           <---------CCA1(2)---------->DOF2 -----RAV1(1)    <---------MYB52(1)   ----------->RAV1(1) --------->ARR11(3)<---------YAB1 --------->YAB1   tgtgcttgttcctcccaccgttccttcgcttgaaagtctgcaacacaaacaacaatggaagatcatcaattctctatctttattgtaattcaaagataag  16953400                                                                                <---------ZAT2                                                                                --------->ZAT2                                                                             <------NtERF2 -------->DEAR3(2)                                                           <---------At4g35610 -------->MYB46(3)                                                           --------->At4g35610 ------>P                                                                  --------->ZAT18 --->ANAC58                                                           --------->ALFIN1 ------>MYB52(1)     <----------DOF2                                  <---------ANAC58 --->ANAC46     <-----------------AGL1                       ------->TEIL--------->ARR14(2) --->ANAC58--------------->AtSPL8                      --------->ETT(2)  <---------ARR14(2) ->CCA1(2) <---------------AtSPL8------>ZmHOX2a(1)<---------At4g35610 <---------ANAC58           *TSS   caaccgatgaatgagagtaccatctttggctattcctctcttctcactctccagatgtcgatggacttaagtgtgtgtccgctgctagggtttactcgct  16953500                                 <------------CBF                                --------->ATHB12                              --------->ANAC55(2)                              <---------ANAC55(2)                       <------------CBF                     <---------YAB1                    <----------DOF2                   ------>ZmHOX2a(2)                 <---------ARR11(3)                 --------->ARR11(3)                      <----------DOF2      <----------DOF2           ===============HOX2a_HOX2a            <---------YAB1     --------->ZAT18                 -           <------ZmHOX2a(1)<-----------GT1--------->AHL20(2)       <---------ZAT18             -----   tctcatcgatagaggagatgatctttattgttacttattgggccttaaattacgatgggcttttacatagtgggcttaggctttattttctcttgtttta  16953600                                                    ------->PIF5                                                --------->ZAT14                                                --------->ZAT2                                                <---------ZAT14                   <----------DOF2                                           <---------At4g35610                   <---------DAG2                                           --------->At4g35610         --------->ANAC55(2)                           ------>ZmHOX2a(1)    <---------ZAT2         <---------ANAC55(2)                     <---------ANAC58     <---------MYB46(3)         <---------WRKY38(1)                 <----------DOF2         <--------P <-------PIF5    --------->WRKY18(1)            --------->At5g28300         <-------GAMYB              <-----------HVH21 -------->AHL20(2)   <---------ANAC58  <---------MYB46(3)         <---------MYB46(3)       <--------- ---->AHL20(2)   <---------DAG2       <---------AtMYB61    --------->YAB1     <-----------GT1   aaataaacactggcagtgacttttcgttcctcactcagagatggttgctgagcacgggcaatcttcagtggtcaagtgattaaccttttgttttttctgt  16953700                                                                          <---------At4g35610                                                                          --------->At4g35610                                                                          <---------ZAT2   --------->YAB1                                         --------->YAB1  --------->ZAT2            <  <---------YAB1                   <---------ANAC46   <---------------AGL15            <------ZmHOX2a(1) --GT1                <---------MYB52(1)          <----------DOF2      <------NtERF2<---------LBD16 -   ttctatgataaaacgttttcttctgtttgtgtttctcgcgtttacatttgctctttccaaacatagtgatggcctcagctccgaactcaggaagaccaag  16953800                                                     --------->MYB59                                            --------->ARR14(2)           <---------At4g35610              <---------ARR14(2)           --------->At4g35610        <---------HSFB2a(2)       --------->ANAC58          <---------DAG2      <---------TOE2(3)       --------->ANAC46       <-----------GT1   ------>ZmHOX2a(1)             <---------ARR11(3)       --------->ANAC58<---------ALFIN1     --------->GLK1(2)        <---------O2 ---------ARR14(2)   <-----------GT1  --------->HSFB2a(2)  <-----------GT1    --------->ARR11(3) -------->ARR14(2) <-----------GT1<----------DOF2    <---------TOE1(3)      <------NtERF2   aagaaatgcaagcagcttattttacacacttcttacctttcgagagaatcctatttaggtttttcggtttcacttggcagggtcttggagataactagtc  16953900                                                                      ------>MYB46(1)                                                                      ------>MYB83             ------                                        <----------DOF2             <---------MYB59            ------                                   <----------DOF2               <-----------GT1               ------                                  <---------DAG2         <-----------GT1 --------->TOE2(3) --------->YAB1                               <-----------GT1         <---------HSFB2a(1)              <---------ICU4                        --------->ANAC55(2)            --------->HSFB2a(1)              --------->YAB1                        <---------ANAC55(2)     <-------TEIL<----------DOF2           <---------KAN4(2)                        ----------->GT1 <---------------AGL15 <---------ICU4     --------->MYB52(1)   atatgggaagacataataagggagtcaagtgataaaccttttcttttagatgcaagaattttctttattaccaaatctaaatgtaacgaataatcacaag  16954000  Previous    Next  AGI:  At2g40590.1    Description:  40S ribosomal protein S26 (RPS26B). Identical to 40S ribosomal protein S26-1 (RPS26A) [Arabidopsis Thaliana] (GB:P49206;GB:O22876); similar to 40S ribosomal protein S26 (RPS26A) [Arabidopsis thaliana] (TAIR:AT2G40510.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ55142.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51439.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ61224.1); contains InterPro domain Ribosomal protein S26e; (InterPro:IPR000892) Range:  from: 16952123    to: 16953497    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g40600.1    Description:  appr-1-p processing enzyme family protein. similar to appr-1-p processing enzyme family protein [Arabidopsis thaliana] (TAIR:AT1G69340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70345.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41506.1); contains InterPro domain Appr-1-p processing (InterPro:IPR002589) Range:  from: 16953948    to: 16955639    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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