Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------ICU4                                                    <--------HAHB4                                                    --------->ATHB12                                                 --------->YAB1                                          ----------->GT1                                          <---------ANAC55(2)                                    <---------AHL20(2)                                --------->AHL20(2) <---------YAB1                                <-----------GT1 <---------AHL20(2)                         --------->ZAT6 --------->AHL20(2)            --------->RVE1(1)                      <----------DOF2   <---------AHL20(2)           --------->ARR11(3)                  --------->RVE1(1) --------->AHL20(2)      <---------AHL20(2)                 --------->GLK1(2)--------->ANAC55(2)      --------->AHL20(2)                 <---------ARR11(3)<---------------AGL15<---------AHL20(2)                          -                 --------->ARR11(3)--------------->AGL15--------->AHL20(2)                      -----                <---------GLK1(2) <---------ANAC55(2)  --------->AHL20(2)           <---------YAB1 -- -->GT1  <---------At4g35610    <---------AHL20(2) --------->ICU4    <---------ARR11(3)  ----------->GT1 -YAB1   --------->At4g35610 <---------ICU4 --------->AHL20(2)       --------->GLK1(2) <---------YAB1   attgaaattgcagcttcaaaatctctttcactaattacttaattaagtaaataatcatttatttaatagaaaatctcttgtaatttgtgattagtgaata  16840700                                           <---------YAB1                                          --------->AHL20(2)                                       --------->TOE2(3)                                   --------->ARR11(3)                                   <---------ARR11(3)     --------->MYB52(1)           --------->RVE1(1) ----------->GT1                  --------->CCA1(1)                                                -- -------->DAG2                 <---------AHL20(2)                         <------ZmHOX2a(1)        <- ---->AHL20(2)                <---------AHL20(2)            ---------->DOF2          <------MYB46(1) -------->DOF2                --------->AHL20(2) <----------ID1    --------->ZAT18   <------MYB83 ---   aaaaagttaacagaacaactaaaatactaaaattaaatatcccttaaaattggaacaaataagaaagagtgcataaggaaaacaatttggttttatgcaa  16840800                                       <---------YAB1            <---------ARR14(2)                               ----------->GT1                   --------->ARR11(3)                             <---------WOX13(1)                  --------->ARR14(2)                           --------->ATHB12           ------>ZmHOX2a(1)                        --------->ANAC46         --------->KAN4(2)--------->GLK1(2)                        --------->ANAC58  <---------WOX13(1)     <---------GLK1(2)                        --------->ANAC55(1)     <---------HSFB2a(1)    --------->AHL20(2)  --------->ANAC55(2)     --------->HSFB2a(1) ------->AHL20(2)       --------->ANAC58--------->ATHB12  <------------CBF --------AHL20(2)       <---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    - ------>AHL20(2)   <----------ID1   --------->ICU4   --------->TOE2(3)         <------ZmHOX2a(1)    <   tttaaattaaaacaaacaaaaacaacaagtaattggtaaatatgattggcacattcctcaaattgaagattctgttttagaggagagaacaaaaaaaaaa  16840900                                         --------->YAB1                                        <---------ATHB12                                       ------>MYB83                                       ------>MYB46(1)                                      --------->WOX13(1)                                    --------->MYB46(3)                             <---------YAB1                             <---------AHL20(2)                           <---------RVE1(1)                 --------->YAB1     ------------>CBF            <---------ARR11(3)    <<<<<<<<<GT-1            --------->GLK1(2)--------->ICU4    <---------ICU4                                --------            --------->ARR11(3)    <-----------GT1    --------->ZAT6                          --------     --------->ANAC58      <---------CCA1(1)   --------->ATHB12                              --------     --------->ANAC46     <---------ARR11(3)   --------->YAB1                             <----------     --------->ANAC58     <---------AHL20(1)  --------->ICU4                   <---------MYB46(3) -------->ARR14(2)        --------->ARR11(3)  <---------ATHB12                 ----------->GT1 ---------ARR14(2)        --------->AHL20(1) <---------ARR11(3)     ------------>CBF --------->ICU4   catatacactcaaaaatcttcataacaagatattattaaccaatcaaaatcattaccactaaaaaaaaaacacaattttagttgttaattagtaaccata  16841000   <---------ARR14(2)   --------->ARR14(2)   <---------ARR11(3)                                        --------->ZAT6 ->TOE1(3)                                 --------->At4g35610           <---------CCA1(2)         -- ->YAB1                  --------->CCA1(2) <---------At4g35610         <---------ICU4      --------->YAB1 ->TOE2(3)        <------------CBF    ----------->TBP        <---------ALFIN1             ----------- -GT1            --------->ATHB12--------->ZAT6    <---------REM1(1)--------->YAB1      <------------CBF   atccagttcttctacctgttcattgagagatgctaactctatataagctgataatgtaggctaacacttctcatcatctcttagaacaagtattgataaa  16841100                                                                                <----------DOF2                     --------->TOE2(3)                                       <---------ARR11(3)                     --------->TOE1(3)                                       --------->ARR14(2)           <-----------GT1                           <----------DOF2         ------->TEIL    <---------AHL20(2)           --------->YAB1<---------ICU4                <---------ARR14(2)    <---------AHL20(1)          <---------ATHB12    <---------ANAC58        <---------CCA1(2)  <-----    --------->AHL20(2)          <---------ATHB51    <---------ANAC58    <---------ANAC46       <----- ---------->CBF   <---------ALFIN1           --------->ANAC58   <---------TOE1(3)  <---------ANAC58 >GT1<---------AHL20(2)     ------------>CBF --------->ANAC58   <---------TOE2(3)  <---------ANAC58   caacaattttttttttccatacaccttaaactcaataataagatggcaagcattgcttttgtgtttaaggttttatgtgtatctttcttgttcatatttg  16841200                                                                       --------->YAB1                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <-----------HVH21   ----------->GT1                                         --------->ANAC58    --------->ANAC58                                         --------->ANAC58    --------->ANAC58                                <-----------GT1            --------->MYB52(1)                                <---------DOF5.7(2)     <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ------->TEIL          ------>ZmHOX2a(1)----------->GT1<-----------TGA1 --------->SPL1(1) >>>>>>>>>>>>>>>>>LFY ----MYB46(3)        --------->AtMYB61   --------->ANAC46 <---------SPL7  <---------ICU4         ---- ------RAV1(1)   <---------ETT(1)        --------->bZIP60(2)--------->SPL7xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ttgcaagtcgtcctactatccgaccaaaaacgtttaacgtccaacgtcatggttctaagccggacggaaaaactgataatgccaatgtatgtaaacgaga  16841300                                                  ------->TEIL                      --------->AHL20(2)  --------->GLK1(2)         <---------AHL20(2)               <---------ARR11(3)        <---------AHL20(2)                --------->ARR11(3)        <---------AHL20(1)                <-----------ARR10                                      ----        --------->AHL20(2)           ----------->GT1                                            ----- <-----------GT1  <---------YAB1   --------->At4g35610            --------->YAB1              ------- ----->GLK1(2)  <-----------GT1 <---------YAB1 --------->AtLEC2--------->YAB1           --------->ANAC46   atttttctaattttttttttaccattaattagttatgagatgaaaatctatgcacattagcacaactataaacatatatgacaaatatacaaaccaaaaa  16841400                                                                                           <---------AtLEC2                 <---------AHL20(1)                                                    <---------ANAC58                 --------->AHL20(2)                                           <---------ARR14(2)                 <---------AHL20(2)                                           --------->ARR14(2) ----                 --------->AHL20(1)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------AHL20(2)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(1)                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------AHL20(1)                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------AHL20(1)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------    --------->AHL20(1)        >>>>>>>>>MYB98  --------->YAB1     --------->ANAC55(2)   <---------ANAC58   --------->AHL20(2)       <-----------GT1 <---------YAB1       <---------ANAC55(2)   <---------ANAC46 ------->GT1 --------->AHL20(2)          <---------YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------- ------>GT1  <---------AHL20(2)    --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------- --->DOF2<---------AHL20(2)<---------AHL20(2) --------->TOE2(3) --------->MYB59       --------->ALFIN1   gataaatatatatttttaatttattgtattttaacatatatatatcattcttaacacatacaaaatcaggtattcacaagtatatggagtcgtgcatgca  16841500                                                        <---------ZAT14                                                       <---------ANAC46                                                       <---------REM1(1)  --------->AtLEC2                                                     <---------MYB46(3)   --------->ANAC58                                                    --------->ALFIN1      --------->ANAC46                                                    <---------DEAR3(1) <-------TEIL                                                    <---------AtMYB61<---------PCF2       --------->ALFIN1                     <-----------GT1          --------->TCP20    --------->DAG2                      --------->AHL20(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   ---------->DOF2                      --------->ARR11(3)  <---------ZAT6--------->ANAC58 ------>DOF2                ------->TEIL<---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->AtLEC2           --------->ARR11(3)  <---------AHL20(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <----- ->ANAC58           <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(s) ---- ->ANAC58     ----------->GT1   ---------->DOF2  <---------DEAR3(1)<---------MYB46(3)------>ZmHOX2a(1)   aaagaaaaagtggaagtagtaaaatctatgtaccaaaaggaatattttacctcggtggtgtagagtttgtgggtccatgcaaaaatcctattgaattcgt  16841600  Previous    Next  AGI:  At2g40310.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G43080.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G26620.1); similar to polygalacturonase [Arabidopsis thaliana] (TAIR:AT4G13760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41851.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contai Range:  from: 16841143    to: 16842789    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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