Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------TOE2(3)                                                  ---------->DOF2      <-----------GT1                      <---------ICU4                                           < ---------AHL20(2)                         <--------HAHB4                                         --- -------->AHL20(2)                         --------->ATHB51                                      <--- ---------AHL20(1)                        --------->ICU4         <----------DOF2                ----- -------->AHL20(1)                        <---------YAB1       --------->LBD16                  ----- ------->AHL20(2)   <-------TEIL      --------->TOE2(3)      <---------LBD16          ------>ZmHOX2a(1) ----ATHB12   <-------TEIL     --------->ZAT6<---------YAB1<-----------GT1 ----------->ARR10   ------   aataaatttcacaatatacatatacatagtataacacaaacctcattattactaaaggttttttccgcattttggtttagatttgttcctactaaaccaa  16799200                                   --------->TOE2(3)            --------->YAB1 ---------YAB1               <---------MYB59             --------->ANAC58 ------>YAB1                 --------->TOE1(3)        --------->AtMYB61<---------YAB1 ------ATHB12                --------->TOE2(3)        <---------MYB59 --------->TOE2(3) ->MYB46(1)       <---------ARR11(3)          <---------HSFB2a(2)  <-----------GT1 ->MYB83          --------->ARR14(2)     <---------ICU4  --------->ANAC46 --->WOX13(1)     <---------ARR14(2)    <---------ATHB12 --------->ANAC58   --------->YAB1   tcacgatttgtatatttcaagatttgtataacctaaatctaaatcattccataagacctaagccaagaataacattattcgtaataaactgagtagatag  16799300                        --------->TOE2(3)             --------->ATHB12            <---------AHL20(2)            --------->AHL20(2)          --------->TOE2(3)          --------->MYB46(3)                                        ------        <---------TOE2(3)  --------->YAB1            --------->MYB52(1)             <------ZmHOX2a(1)    <----------DOF2  --------->GLK1(2)    --------->ANAC46                        <---------TOE2(3) <---------TOE1(3)   <---------ARR14(2)   --------->ANAC58                        <---------TOE2(2) <---------TOE2(3)   --------->ARR14(2)   --------->ANAC58               ---------->DOF2    <--------   attaagctttaacattaattgagaatccataacaatccaacaacaaggaataacttaactgaaacaagttcagacaaaagtacttaggatttaagcgaaa  16799400              --------->ARR14(3)              --------->ARR11(3)              <---------ARR11(3)              <---------ARR14(3)                      <---------ANAC58             <------MYB83                             <---------ANAC58<---------At4g35610             <------MYB46(1)               <-----------HVH21    ------>ZmHOX2a(1) ---->DOF2  ----------->ARR10          ================================HOX2a_HOX2a      <<<<<<<<<TBF1 --ID1      <---------AtMYB61          ------>ZmHOX2a(2)<---------CCA1(2)   ------>ZmHOX2a(1)<-------   agacagaaacagggaaggtcttgaagatgagtctacttagatcgctgtctcatctttcgtctcttcctcttcagcctcctcattcgcttcttcttccact  16799500                                         --------->O2                                         --------->ANAC55(2)                                         <---------O2                                         <---------REM1(1)                                    -------                 <---------GLK1(2)       <---------ANAC55(2)                                  -------           <---------ARR14(2)           <-----------------------TaNAC69(2)            XXXXXXXXXXXXXXX      --------->ANAC58          --------->YAB1                                --------->CCA1(2)      --------->ANAC58     --------->At4g35610                               <---------ARR11(3)      --------->ANAC46    --------->ANAC46                                   --------->ARR11(3) --------->ARR14(2)     <---------At4g35610           <---------WOX13(1)     --------->ARR14(2)   --- <---------ARR14(2)     --------->At4g35610  <---------At4g35610             <---------ARR14(2)   <-- --ALFIN1  --------->ARR14(2)----------->RAV1(1)  <---------WOX13(1)       ----------->ARR10<--------   gcgaaaccacgcatatacagaaacttagcagcaacaataagagacgtagcagattgatagactaaaatgtattggtgaagatttgaaagatgaatacctt  16799600                                                         --------->DOF5.7(2)                                                         --------->At5g28300                <--------                                                        ----------->GT1               --------->At5g28300                                                      <------NtERF2                 <------------AtMYB77         --------->LBD16                             <---------ATERF1(1)          --------->ARR14(2)        <---------ANAC46                             ------>NtERF2                <---------ARR14(2)       <---------LBD16                              <---------DEAR3(1)            --------->MYB52(1) -->TOE1(3)                                         ----------->HVH21          <---------ANAC58 -->TOE2(3)----------->ARR10                        --------->DEAR3(1)         --------->ANAC55(2) XXXXX>MIR852                                   <---------LBD16                <---------ANAC55(2) ------>At4g35610                               <---------At5g28300            <---------ANAC46 -------At4g35610  <----------DOF2           <-----------HVH21                 <---------ANAC58   --- -ARR11(3)<------NtERF2         --------->TOE2(3)--------->ANAC46         <---------REM1(1) ---------   agctctcatggcggagaaactcttttgctcagaaccctaatcggcgatttcacggcgacggtaacaagaagtggaaatgtagcgtaactgtgaatatata  16799700                                                                            <---------AHL20(1)                        --------->AHL20(2)                                  --------->ARR11(3)                        <---------AHL20(2)                                 <---------CCA1(2)                        <-----------TBP                                  <-----------TBP         --------->STY1(1)<---------AHL20(2)                           <---------ANAC58          >>>>         <---------STY1(1)----------->TBP                         <----------DOF2                >>>> -ARR11(3)            <-----------TBP                            <---------DAG2  --------->TOE2(3) ------>TOE2(3)   ----------->GT1                     ------------>CBF <---------ANAC46     <-------- >ARR11(3)    --------->ALFIN1      <----------DOF2  <-----------GT1   <---------ANAC58<----------DOF2   ccttgaaaaccctagggtagaggtatatatatatgggcctttttcttagcccatataacaatatgggccttttgcttatatattcttagcttttaagaaa  16799800                                                   <---------AHL20(2)                                                   --------->AHL20(2)                                                   --------->ATHB51                                                   --------->ATHB12                                                  <---------AHL20(2)                                                  --------->AHL20(2)                                                  <---------AHL20(1)                                               --------->AHL20(1)                                               <---------AHL20(2)                                               <---------AHL20(1)                                               --------->AHL20(2)                 --------->AHL20(2)           --------->AHL20(2)               ----------->GT1         ----------->GT1        --------->GLK1(2)              <-------GAMYB                                         <------- >>>>>SARD1   ----------->GT1         ----------->GT1      --------->MYB52(2)         ----------->GT1 >>>>>CBP60g---------->DOF2    <-----------GT1<---------AHL20(2)            ---------->DOF2 <-------- -TOE2(3) --------->YAB1  <----------DOF2 --------->AHL20(2)             <-----------TBP    ---------   tttggacgagaatcaaaagttaaatattctttttttctgtctgttaaaataaattatttgtttgtttctatgggtttttaaagaaaatttgttataaatt  16799900                                                                                 <---------TOE2(3)                                                                            --------->ATHB12                                                                            --------->YAB1                                                                            <---------ICU4                                                                            -------->HAHB4                                                                     ----------->GT1   <---------TOE2(3)                                                              <---------AHL20(2) <---------TOE1(3)                                                              --------->AHL20(2) <---------YAB1                          <---------TOE2(3)                --------->YAB1  --------->ICU4                       <---------YAB1                     <---------YAB1  <---------TOE2(3)         - --AHL20(2)         --------->ICU4                       --------->AHL20(2)<---------ATHB12 --------- -AHL20(2)   --------->YAB1          <---------AHL20(2)  <---------AHL20(2)<---------YAB1<------ZmHOX2a(1) >AHL20(2)--------->WOX13(1)     --------->AHL20(2)   ------->TEIL <-----------RAV1(2) <---------TOE1(3)   tggccaactcatccatcatatacttattaatgtttttatataaaaaaaaacgtatgcattttaataaaatcaggttaatgattaagattaaggatggaaa  16800000               --------->AHL20(2)          --------->At4g35610            ------->GAMYB               <---------AHL20(2)   <------MYB83                         --------->ANAC46  ----------->GT1     ----------->GT1 <---------GLK1(1)      ----------->GT1  XXXXXXXXXXXXXXXXXXXX>MIR3933 --------->DAG2--------->AHL20(1)   <------MYB46(1)      <-------TEIL    --------->ANAC58    -------- --------->DOF2<---------AHL20(1)  --------->MYB59  <---------AHL20(2)   --------->ANAC58------>MYB46(1) -->GT1  --------->YAB1         --------->CCA1(2)  --------->YAB1      --------->MYB52(1)------>MYB83   aaaaaagtaaatcacaataaaatatagaaataagagataggtctccgatgaaataaaaatgcatagtcaaaatcaacgaaacaaaatgaccaactcaaag  16800100  Previous    Next  AGI:  At2g40200.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G25710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41394.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 16798176    to: 16799168    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g40205.1    Description:  60S ribosomal protein L41 (RPL41C). contains InterPro domain Ribosomal protein L41; (InterPro:IPR007836) Range:  from: 16799395    to: 16799609    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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