Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                              -------                                                                                              <------                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                    <---------ZAT2                                                                             <---------ARR11(1)                                                                             --------->ARR14(2)                                                                             <-----------ARR10<------                                                                             <---------ARR14(2) -----                                                                             --------->ARR11(3)<-----                                                                             <---------ARR11(3)------                                                                            <---------ARR14(1)<------                                                                            <---------CCA1(2) -------                                                                        --------->ANAC58  ---------->DOF2              --------->ANAC46           --------->ZAT6                 --------->ANAC58--------->ANAC58              --------->ANAC58      <---------At4g35610                 --------->ANAC46--------->ANAC58              --------->ANAC58      --------->At4g35610            ------>ZmHOX2a(1)--------->ZAT2  <          <-----------GT1          ------->TEIL      --------->YAB1================================== --->GAMYB--------->YAB1    <---------ANAC46      ------>ZmHOX2a(1)==================================   cctcaaaacttatcacaagtcacaaccttggggtatgaagctaacactactcctataaacattcacatcctaacaagcaaatcttcagctacgaaagatc  16706700   ------>ZmHOX2a(2)   ==================================HOX2a_HOX2a  --------->GLK1(1)  <---------GLK1(1)  <------ZmHOX2a(2)  ===================================HOX2a_HOX2a <---------ARR14(2) <---------ARR11(3) --------->ARR14(2) --------->ARR11(3) -->ARR11(3) -->AGP1 ---AGP1                                                                                          <-- ---ARR14(2)                                                                           <---------ANAC58 ->ZmHOX2a(2)                                                                          <---------ANAC58 -ZmHOX2a(2)                                                                           <---------ANAC46 --->CCA1(2)                                                                          <------NtERF2-- ---ARR11(3)                                             ----------->RAV1(2)        <---------DEAR3(1) -->ARR14(2)                  =====================HOX2a_HOX2a          --------->ATHB12<---------SPL7 ------ZmHOX2a(1)             <------ZmHOX2a(1)         ------->TEIL   <-------TEIL--------->SPL7 <-- ==HOX2a_HOX2a               ----------->GT1<------ZmHOX2a(2)      <---------YAB1----------->HVH21<-- =HOX2a_HOX2a     --------->GLK1(2)        <---------ARR11(3)  ------>ZmHOX2a(2) <---------SPL7  <---   taggatctccaacgatagagaatcgagagagaggagaaatttagagatcaaaatttcgaacctgatcggatgattcattgtgagggacggcgtatgaatt  16706800                 <-----------RAV1(2)                <---------MYB52(1)               <-----------HVH21           <---------ARR14(2)           --------->ARR14(2)         <---------MYB46(3)         <---------HSFB2a(1)            <---------GLK1(1)         --------->HSFC1(2)             --------->GLK1(1)         <---------HSFC1(2)            --------->HSFB2a(1)         --------->HSFB2a(1)     --------->LBD16         <---------DEAR3(2)     <---------TOE1(1)        <---------DEAR3(1)   <---------ARR14(2)                <-----------HVH21      ------------>AtMYB77   --------->ARR14(2)           <---------At4g35610     --------->ETT(2)        --------->AGP1  --------->At4g35610      --------->TGA1a  <---------GLK1(1)        ----------->ARR10 <---------At4g35610      <---------TGA1a --------->YAB1-  --------->GLK1(1)  <--------P <---------TOE2(1)         --------->ZAT2           --------->WOX13(1) <---------ARR14(2)----------->GT1  <------ZmHOX2a(1)     <---------ZAT2        --------->ANAC58   -- --------->ARR14(2)<---------ANAC55(2) <---------HSFB2a(1)--------->At4g35610   --------->ANAC58 <--- -------ANAC46 <-----------TGA1------>ZmHOX2a(2)          ----------->RAV1(2)--------->ANAC46   ----- ------->LBD16<---------ANAC46--------->CCA1(2)----------->HVH21      =============================== -------ANAC58<---------ANAC55(2)<---------LBD16        <-----------RAV1(2)  --------->ANAC58   <---- -------ANAC58<---------ANAC58<------ZmHOX2a(2)--------->WRKY38(1)  <------ZmHOX2a(1)<---------ATHB12 ------LBD16  <---------ANAC58=============HOX2a_HOX2a<-----------HVH21      --------->ANAC58 -------   gcggatatcgacggttccgtcaggtaagatagatccgaggagagttccgatgactcgttcagctgagtcaggacgtctcacgaagcaatcacagacgtta  16706900                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                        ----------->TGA1                          ---                                                    <---------MYB52(1)                            ---                                                   <-------GAMYB                                 ----                                                 <------NtERF2                                   ----                                                ------>NtERF2                                    <---                                               --------->ANAC58                                  ----                         <---------MYB52(1)    <---------DEAR3(1)                                ----                        --------->At5g28300    --------->ANAC58                                  ----                        --------->LBD16       --------->ATERF1(1)                                ----                       <---------ANAC46       --------->SPL7                                    <----                 ------>ZmHOX2a(2)          ----------->HVH21                                   -----                <------ZmHOX2a(2)           <---------SPL7                                      <----               --------->ARR11(3)           <---------ZAT18                                    ------  --------->MYB52(1)--------->ANAC46       <---------ANAC46                                    <----- -------->ARR11(3) ------>ZmHOX2a(1)       <---------ANAC58                                  <------- ------->YAB1<---------MYB46(3)            <---------ANAC58                          --------->At4g35610 ------TOE2(3) <---------ARR14(2)         <---------At4g35610                        <---------At4g35610 ----->DOF2 --------->ALFIN1  --------->ZAT14------>NtERF2 <---------ANAC46        <---------ZAT18--- ======bZIP_DOF<---------ARR11(3)         --------->At4g35610                     <---------ANAC58--- -----DOF5.7(2)--------->ARR14(2)     <---------REM1(1) ----------->HVH21         <---------ANAC46<-- -->DOF5.7(2)----------->ARR10<---------ZAT14<---------ATERF1(1)                  <---------ANAC58---   aagataacgagagggtggatcctcgccgtgagtacagaggttgtagcggacgccgttgatgacggagacacaaattgcaagatggtgtgctcgctcgtcg  16707000         <---------TOE2(3)         <---------TOE1(3)         ----------->ARR10   --------->ICU4 ------NtERF2 ---->NtERF2 --------RAP2.6(3) ------>RRTF1(2) ------>RAP2.3(3) ------>DREB2C(2) ------>RRTF1(3) ------>DEAR3(1) ------>ATERF1(2) ----->RRTF1(1) ----->DEAR4(2) ---NtERF2  --------->GLK1(2) ----->ATERF1(1) ----->ORA47(2)                                                                     <------ZmHOX2a(1) ----->RAP2.3(1)                                                                   <------MYB46(1) ----->ERF1--------->ARR11(3)                                                      <------MYB83 -----ATERF1(1)                                               ============================MYC_MYB ->NtERF2<---------YAB1                                 <---------ARR14(2)       <--------P -----RAP2.3(1)                   <------NtERF2        <---------GLK1(1)       <------MYB46(1) --->DEAR3(1)                    ------>NtERF2         --------->GLK1(1)    <------ZmHOX2a(1) ----DEAR3(1)              =============================================bZIP_DOF--------->TOE1(2) ----HVH21 <---------GLK1(2) --------->DAG2         <---------TOE1(3)    --------->At4g35610 ------>RAP2.6(2)          ---------->DOF2          <---------TOE2(3)    <---------At4g35610 ------>RAP2.3(2)       --------->At5g28300     --------->CCA1(2)      <-----------RAV1(2)        --- -------ATERF1(2)      ----------->GT1         --------->ARR11(3)    <-----------HVH21    *TSS   <--- ------>ANAC46        ----------->GT1     --------->ALFIN1    --------->TGA1a  <------MYB83  --------   ccgccatggttaagattctgagaaggggtaaaaggcgcgagagagtggagatttagggtttccgatgtgagcgtcagaggaaggtaggagaaggcatcaa  16707100                         <---------ZAT18                   <<<<<<<<<<<<<<<<<LFY           <------MYB46(1)        <---------ARR14(2)                              <---------ANAC46        --------->ARR14(2) <---------PCF2               <---------ANAC58 ------>YAB1    <---------ANAC58                        <---------ANAC58 ------ATHB12   <---------ANAC58              <---------AHL20(2)  <---------YAB1                 <--- ---->CBF  <------MYB83 --------->ALFIN1     --------->AHL20(2)   <---------ATHB12    <---------ALFIN1   tgatacagaagataggttatgtgccagtgggcctacaaacaggcccattaaatgtttttcttggactaatgaatgaatactcattcaaacacttcccttc  16707200                                                                              <---------DEAR3(2)                                                                             <---------TOE2(2)                                                                             <---------TOE1(2)                                                                <---------MYB46(3)                                              <---------ANAC58  <------MYB83 <---------DEAR3(1)                                              <---------ANAC58  ----------->GT1                <-----                                      --------->ANAC58          <------MYB46(1)               <------                                      --------->ANAC58         --------->MYB59<---------MYB46(3)                                   ---------->DOF2           <---------MYB52(1)            --------->YAB1 -------DOF2                --------->MYB52(1)<---------ANAC46 <---------AtMYB61<---------MYB52(1)   tttctcttaatgaaatttgttgaacacaaaaaacagagaaaggcaatgtcgttttatacatcggtttggttactcatcgtcggtttgggttttttataac  16707300                                                                          <-----------GT1                                                                         <-----------GT1                                                                        <---------AHL20(2) <------MYB46(1)    <---------ANAC58                                                    --------->AHL20(2) <------MYB83    <---------ANAC46                         ---------->DOF2         <---------ICU4       <---------AtMYB61    <---------ANAC58       <---------YAB1 --------->At5g28300       --------->ICU4     <------ZmHOX2a(1) ----TOE2(3)     --------->ATHB12<---------YAB1----------->GT1      <---------YAB1   <---------TOE2(3) -----GT1       <---------YAB1  --------->AHL20(2)                --------->YAB1   ---------->DOF2   gtttttgtgtgtgtgtttatcattgaattttgaatattatacactgtgaaagtgaaattgtgtttttctcataatttaacatctacaaaggataggtgtg  16707400                                        ----------->GT1                                       --------->ALFIN1                                     <------MYB46(1)                                               --                                     <------MYB83          <-----------HVH21              --------->MYB52(2)                                    <---------AtMYB61<---------YAB1                     <---------MYB52(1)                                 <------ZmHOX2a(1)  <---------TOE2(3)            <---------MYB52(1)--                            --------->ANAC46   <---------MYB46(3)              <---------MYB46(3)----   aaattgtgtttttctcatacactaacatctacgaaggataggtggtgatttgttgacgattagtcagagcatatagattagtcgttactcgttagtagac  16707500                                                                            --------->ARR11(3)                                                                            <---------ARR11(3)                                                                           --------->RVE1(1)                                                                           --------->CCA1(1)                                                                   <---------MYB46(3) ---->MYB46(1)                                --------->ARR11(3)   --------->MYB52(2)               - ---->MYB83 <-----------GT1    ---------->DOF2<---------ARR11(3)   ----------->GT1           <------- ----->AtMYB61       <---------ANAC46       <---------YAB1       <---------MYB52(1)    --------->YAB1   cacccatatttgaattacgacttgtggataattcaaagtatggattacgatattcgtaaatgttatcgtttgttaaaaaatctcataaatcatataaaaa  16707600  Previous    Next  AGI:  At2g39990.1    Description:  EIF2 (eukaryotic translation initiation factor 2); translation initiation factor. Identical to Eukaryotic translation initiation factor 3 subunit F (TIF3F1) [Arabidopsis Thaliana] (GB:O04202); similar to MEE34 (maternal effect embryo arrest 34) [Arabidopsis thaliana] (TAIR:AT3G11270.1); similar to unknown [Populus trichocarpa] (GB:ABK94175.1); contains InterPro domain Mov34-1 (InterPro:IPR003639); contains InterPro domain Mov34/MPN/PAD-1 (InterPro:IPR000555) Range:  from: 16705170    to: 16707090    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g40000.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41329.1); contains InterPro domain Hs1pro-1, C-terminal (InterPro:IPR009743); contains InterPro domain Hs1pro-1, N-terminal (InterPro:IPR009869) Range:  from: 16707588    to: 16709106    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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