Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------At4g35610                                            --------->AHL20(1)           ------>NtERF2                                                           <---------AHL20(1)        --------->At4g35610                                                        --------->AHL20(2)        <---------At4g35610                                                        <---------AHL20(2)     --------->At4g35610                                                          --------->AHL20(2)     <---------At4g35610       ---------->CDC5                                <---------AHL20(2)  <-------GAMYB     <---------ZAT2    <-------GAMYB                     ----------->GT1  <---------At4g35610  <-----------HVH21                             <---------GLK1(2)      --------- <-----------RAV1(1)--------->At4g35610<---------MYB52(1)            --------->ARR14(2) <---------AHL20(2) <---------MYB46(3) --------->ZAT2--------->DEAR3(1)                 <---------ARR14(2)--------->AHL20(2)   tgtctgttgctgcagccattgcagctgtcagactcatcgccgttgattccaaaaatttccatgtttttgcagatttgtaattcattatattatatagtca  16665300            <---------YAB1        <----------DOF2                                                                        <-----        ------>ZmHOX2a(1)                                                               --------->WOX13(1)    <---------ARR14(2)                                                                 --------->AHL20(2)    ------->TEIL                                                                       <---------AHL20(2)    --------->ARR14(2)                                                                --------->AHL20(2)   <---------CCA1(2)  <------MYB83                                                    <---------AHL20(2) <---------ANAC58     <------MYB46(1)                                              --------->AHL20(2) <---------ANAC58     ----------->GT1                                             <---------AHL20(2) -->GT1--------->TOE2(3)           ------>ZmHOX2a(1)               <---------YAB1 --------->AHL20(2)   attgtgtatcctttattcttaggcaggtttatttctcctgtaagcttgtattctctctctatttgtcttaccattagagcctaaataaataaatcaagtt  16665400                                       --------->YAB1                                       <---------ICU4                                      <---------YAB1                                      --------->ICU4                                      <---------ATHB12                                    --------->YAB1                                    <---------ICU4                                ---------->DOF2                                   <---------YAB1                               <---------YAB1                                   --------->ICU4                             --------->ATHB12                                 --------->YAB1            ---------->DOF2   <---------YAB1        ---------->DOF2         <---------YAB1           ------>MYB83        --------->ICU4  --------->ARR11(3)          --------->YAB1             ------>MYB46(1)   <---------ANAC58  <---------ARR11(3)       <----------DOF2              ----------->RAV1(1)<---------ANAC58        -- ----ARR11(3)     ---------->DOF2<---------ICU4     <-----------GT1        <---------AtLEC2  --------   ctaaaatctaaaaagcatataaaagaccactttcatcataatcattctgaaaatttaccaacaaagaatactaagttgcatgattaaagtctctattaga  16665500                                       --------->TOE2(3)                                      >>>>>>>>>MYB98                                     ------>MYB46(1)                                     ------>MYB83                                     --------->MYB52(1)                                   <---------MYB46(2)                                   <---------MYB111(1)                                   <---------MYB59                                   <---------MYB111(2)                                         <<<<<<                                  --------->ANAC58                                            <------                                  --------->ANAC58--------->TOE1(3)                           <------MYB83                                  --------->ANAC55(2)                                         <------MYB46(1)      --------->YAB1              --------->ANAC55(1)                                     <---------- --------->GT1                    <---------ANAC55(2)                                     <---------MYB46(3) ->YAB1    <---------ZAT6         --------->ANAC46--------->TOE2(3)                 <---------GLK1(2)   aatgtaaatcatagtattagagaagaacataaaaacacctaacttaaaaaaaccttaatttagtgagatagagaagagaagaaacagaattgttgttggt  16665600                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                    <---------ICU4                                                    --------->ATHB51                     --------->YAB1                 <--------ATHB1                     <--------ATHB1                <---------ATHB12                     --------->ATHB12            --------->YAB1            --------->ANAC58                     <---------ICU4            ------------>CBF            --------->ANAC58                    <---------YAB1            --------->YAB1             --------->ARR14(2)                    --------->ICU4         --------->YAB1                <---------ARR14(2)        <---------MYB59         --------->AHL20(2) <---------ATHB51      --------->TCP20        --------->TOE2(3)       <---------AHL20(2) --------->ICU4     --------->ALFIN1     ---------- <<<<MYB80------>MYB83    <---------At4g35610 <-----------GT1     ---------->DOF2         --------->AtMYB61 ---MYB46(3)        <---------ATHB12      --------->ICU4      --------->ANAC58           --------->ANAC46 -RAV1(1) ------>MYB46(1) --------->At4g35610<---------YAB1   --------->ANAC58<---------ALFIN1 ------   ttaacaaaaacctaatctttcaatgattagctgtttaatttgaaattataacaataatttagacaggccaaagtggaaccccactgtctccaccaaagct  16665700                                                        <---------ICU4                                                        --------->ATHB12                                                        --------->YAB1                                                        <--------HAHB4                             <---------RVE1(1)         <---------YAB1                             <---------CCA1(1)         --------->ICU4                            --------->ARR11(3)    --------->ANAC55(2)                     <---------At4g35610                            <---------ARR11(3)    <---------ANAC55(2)                     <------NtERF2                        <---------MYB52(1) --------->YAB1      <----------DOF2        --------->ANAC46                  ---------->DOF2         <---------ATHB12    <---------DAG2          --------->ANAC58                --------->ANAC58        --------->WOX13(1) <-----------GT1            --------->ANAC58 >DOF2          --------->ANAC58    <-----------GT1--------->LBD16  <<<<<<<<<TBF1  <---------REM1(2) --->ARR11(3) --------->MYB52(1)  *TSS<---------YAB1   <---------ATHB12          <---------ICU4   <--   ctagataaaaaaaaaaaaacgaaagcgttagatattttttatcaatcgtgctccgtaatcattacctttcttcttcatcttcatcttcacgcagcgactt  16665800                                                                                            ---------                                                                                            <--------                      --------->ZAT2                                         --------->ARR11(3)                      <---------ZAT2                                         <---------ARR11(3)          <----------DOF2                                                   <---------GLK1(1)<------ZmHOX2a(2)  <---------GLK1(2)   --------->At4g35610                          <----------DOF2 ------------------ --------DOF2         <---------At4g35610   <-----------GT1       <-----------------AGL3    ---------   ctttgattctctctttttattctcagctccaatttcaacctgcatttctctcttctcaattttgggtttctttttttgatatctcatttgatcagatcga  16665900                                                                                         <-------TEIL                                                                                        --------->ARR14(1)                                                                                        --------->CCA1(2)                                                                                       <---------ARR14(2)                         --------->MYB52(2)                                            <---------GLK1(2)                       <---------MYB52(1)                                 <---------ANAC46                     <---------MYB46(3)                                   <---------ANAC58                     --------->MYB52(2)                                   <---------ANAC58          -                   <---------MYB52(1)                                   --------->ICU4 --------->ARR11(1) >AGP1           <---------ANAC46            ----------->GT1 <---------AHL20(2)        --------->ARR14(2) -ARR14(2)       <---------ANAC58      <---------AHL20(2)  <---------RVE1(1)       ---------->DOF2  - --->WRI1        <---------ANAC58<---------TOE2(3)        --------->ARR11(3)  --------->HSFB2a(2)   < >ARR14(2)    <-----------GT1   <-----------GT1           <---------GLK1(2)   <---------HSFB2a(2)<---   cgaagaggtaaccattttgccgtttgttagttcttaacgattttattctgttaaaaatcagatttttttttgcaatgcttgtagaaaaagattcgatttt  16666000       <---------WOX13(1)                 --------->ATHB12     --------->ATHB12            <-------TEIL    <---------YAB1               ------>ZmHOX2a(2)    --------->ICU4              <------ZmHOX2a(2) -------->ZAT18                <---------ARR14(2) -------->ZAT14                --------->ARR14(2) ---------ZAT14         <-------GAMYB   <---------WOX13(1)             ----------->GT1--------->GLK1(2) ------ANAC46--------->YAB1    ------->TEIL          <---------At4g35610    ---------->DOF2   <------   tgtgtactgattgaatcaaaatatgtggttatggatccatggattgatttgtttgaactgatgcaaatggctaatgtgaaaagtcaagaatgtgttaatg  16666100                                                                                <----------DOF2                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             --------->ARR11(3)     -                                                                             <---------ARR11(3)     =                                                                             --------->AGP1        <-                                                                            <---------GLK1(1)      ==                                                                     <---------ZAT2               <--                                                                     --------->ZAT2               ---                              <------MYB46(1)                        <---------At4g35610          ---                              <------MYB83                           --------->At4g35610          <--                         <---------MYB46(3)             ==============================HOX2a_HOX2a <--                      <-----------RAV1(1)               <------ZmHOX2a(1)   --------->GLK1(1)     <--                  <----------DOF2       <-----------RAV1(1)   <---------HSFB2a(1)          ---------- ---TOE2(3) <-----------GT1   <---------ANAC46          =============================HOX2a_HOX2a  ---   tagttttttttgttaaacctctttgtgttgttgggttttgaaatgttgttgttacagaggaagaaggtttgagctgagagatctttggaggtagaaagaa  16666200  Previous    Next  AGI:  At2g39890.1    Description:  ProT1 (PROLINE TRANSPORTER 1); amino acid transmembrane transporter. similar to ProT2 (PROLINE TRANSPORTER 2) [Arabidopsis thaliana] (TAIR:AT3G55740.2); similar to ProT2 (PROLINE TRANSPORTER 2), amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT3G55740.1); similar to ProT3 (PROLINE TRANSPORTER 3), amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G36590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69039.1); contains InterPro domain Amino acid transporter, transmembrane (InterPro:IPR013057) Range:  from: 16662757    to: 16665409    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g39900.1    Description:  LIM domain-containing protein. similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55770.3); similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55770.4); similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55770.5); similar to hypothetical protein [Vitis vinifera] (GB:CAN81425.1); contains InterPro domain Zinc finger, LIM-type; (InterPro:IPR001781); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 16665734    to: 16667515    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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