Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                       <----------DOF2                                      ---------                        <---------RVE1(1)                                            <---------ANAC58                        <---------CCA1(1)                                            <---------ANAC58                       <---------ARR11(3)                                            --------->ANAC55(2)                       --------->ARR11(3)                              <----------DOF2    --------->ICU4           <---------ANAC46            <---------DAG2        <----------DOF2         --------->YAB1 <           ----------->GT1  <---------AHL20(2)               ------>ZmHOX2a(1)    <----------DOF2   <   gccagagatagtgatgtgaaaatgagatattatatgtgcaacttttttttttttttttgtgtcctttcttcaactttgaaatcgctttcgtaattcttaa  16597900                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                <---------ARR11(3)                                      --------->AHL20(2)                                --------->ARR11(3)         ---------->ID1               <---------AHL20(2) <----------DOF2   --------->YAB1                     <---------MYB52(1)               --------->AHL20(2) --YAB1   --------->ANAC58      <---------ARR14(2)<---------At4g35610                  <---------AHL20(2) >TOE2(3) --------->ANAC58     <---------CCA1(2) --------->MYB52(2)             --------->AHL20(2) ---------ANAC58  <---------ATHB12             <---------MYB52(1)         ----------->GT1   <-------- ---------ANAC58--------->WOX13(1)           <---------MYB46(3)<----------DOF2  <---------AHL20(2)<--   tggcttttgaataagcatcaatcaaaacgctgtatatcttgttagggtcgtttgctgttttgtctctttttttgttttgtaatttataaaaaaatttatt  16598000                                     ---------->DOF2                                  --------->YAB1   <---------AHL20(2)             --------->AHL20(2) --AHL20(2)                      <---------YAB1 -AHL20(1)                  --------->TOE2(3) >AHL20(1)                <-------TEIL    <----------DOF2 >AHL20(2)      <----------DOF2--------->YAB1                              --------->YAB1 -AHL20(2)  --------->ARR11(3)--------->AHL20(2)                --------->YAB1      ----------->GT1 -------YAB1<---------ARR11(3)<---------AHL20(2)       ----------->GT1--------->AHL20(2)        -----   ctcattttatgtgagatacttttgaatattcattaattataaagctttttttttgtgaagtaacattcaaaattcaatagtagtcattgtaaaaaaactt  16598100                                                                                     --------->ATHB12                                                                                   >>>>>>>>>>>>>>>>>LFY                                                                                   <<<<<<<<<<<<<<<<<LFY                               <-----------GT1                               --------->MYB46(3)                          --------->AHL20(1)                               ----------->RAV1(1)                          --------->AHL20(2)                              <----------ID1                          <---------AHL20(2)            ----------->GT1 --------->ANAC46                     --------->AHL20(2)                <---------TOE2(3)--------->ANAC58       ----------->GT1<---------AHL20(2)   --------->YAB1        <---------ICU4  --------->GLK1(1) ------>GT1      ----------->GT1      <---------YAB1 ---------->DOF2    --------->ANAC58   gaaaatagcatgtataatgcagataaaattttttaacatgaccattgataatccaaaaaggttttaaaaattagaagcaacaaatatccattggggtttc  16598200                              <---------ANAC58                              <---------ANAC46                              <---------ANAC58                            <---------DOF5.7(2)                     <---------ARR14(2)                     --------->ARR14(2)                     --------->KAN4(2)                    --------->KAN4(1)                    <---------KAN4(1)                    <----------TaMYB80                    --------->HSFB2a(1)                                                             *TSS                   <---------KAN4(2)                                                               <-                   ---------->TaMYB80                                                       ---------                 <------ZmHOX2a(1)                               --------->ANAC46           <--------       --------->ANAC46   --------->DOF5.7(2)                  <---------ALFIN1         ------>ZmHOX2a(2)       --------->ANAC58   <---------MYB52(1)                --------->ANAC46           <------ZmHOX2a(2)       --------->ANAC58  --------->TOE2(3)        --------->ANAC46                    <---------ARR14(2)  <---------ARR14(2)<---------HSFC1(2)            --------->TOE1(3)                   --------->ARR14(2)  --------->ARR14(2)<---------HSFB2a(1)           --------->TOE2(3)            ----------->HVH21   --   tccaaatccaaggcatagaggaatattcgttagcgtggaaagactaaaatacccttaacttccctccacataatgtatacagtgacccgatctgaattcg  16598300                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                            <------NtERF2   <--------                                       <---------ANAC55(2)                 --------->LBD16  ---------                                    ----------->HVH21                     --------->DEAR3(1)<--------                                    <------NtERF2                    --------->ARR14(2)     <--------                                   <-----------TGA1                  <---------ARR14(2)     ---------                                   <-----------HVH21                <---------CCA1(2)       ---------                                  <---------TGA2(1)                --------->REM1(2)        ---------                                  --------->TGA2(1)             <---------ANAC55(2)         <--------        ----------->GT1           <---------ANAC58              <---------ANAC46            ---------     ------------>MYB.PH3(1)      --------->bZIP60(1)           <---------ANAC58           <---------     --------->MYB52(1)           <---------bZIP60(1)           <---------ANAC55(1)    --------->LBD16 --------At4g35610                <---------ANAC58              <---------ANAC58      --------->ETT(1) >ARR14(2)                        <---------ANAC46           <---------MYB52(1)      <---------LBD16 -ARR14(2)                  <---------WRKY12                --------------------->WRI1<---------ANAC46 ------->At4g35610     ---------->DOF2 <---------ANAC46------>ZmHOX2a(1) <---------LBD16<------NtERF2   gagctaaaaacggtttcaatcgaattaaagtcaatggcgtcacgtttatgtcttctccttctcgttgcgtgtatcgccggagcatttgccggagacgtca  16598400 -->TGA2(2) ----TGA1 ----HVH21 >ANAC55(2) >ANAC58 >bZIP60(2) -TGA2(1)                                                                          <-----------RAV1(1) >O2                                                                         --------->ANAC46 -bZIP60(1)                                                         <---------ANAC58 -O2                                                                <---------ANAC58 >TGA1a                                                             <---------ANAC46 >bZIP60(1)                                            --------->HSFB2a(2)   --------->ANAC58 >TGA2(1)                            <----------DOF2   <---------HSFB2a(2)   --------->ANAC58 -TGA1a               --------->GLK1(1)              <---------ANAC58     <---------GLK1(1) >ANAC58    ------>ZmHOX2a(2)   <-----------GT1      <---------ANAC58 --------->ALFIN1 --STF1<---------ATHB12      <---------ICU4          <---------ANAC46--------->LBD16   tcgaactcaatcgatctcagagggagttcgattatttcgctctatctcttcaatggcctggaacctattgccgtggaactcgccattgttgctccaaaaa  16598500                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                     --------->MYB52(2)                                                                                     <---------MYB46(3)                 <---------AHL20(2)                                                  --------->MYB46(2)                 --------->AHL20(2)                                                  --------->MYB111(1)                --------->ICU4                                                      <--------P ------            --------->At5g28300                                                    <---------MYB52(1)           ----------->GT1                                                      <---------ANAC46      <-----------RAV1(2)               ------>ZmHOX2a(2)                     <---------ARR14(2)     --------->At4g35610        <-----------GT1                            <---------ANAC55(2)-------     --------->ZAT14           <---------CCA1(2)                           --------->ANAC55(2)<------ZmHOX2a(2)     <---------ZAT14  <-----------GT1 <---------ARR11(3)                 --------->YAB1     <------ZmHOX2a(1)     <---------At4g35610    <----------DOF2                           --------->WOX13(1)  <---------TOE2(3)  --------->At4g35610<-----------GT1  --------->ARR14(2)      <---------YAB1  ------->TEIL<---------TOE1(3)   cgcttgctgcagagggtaaatatttatcttcttttatctcgatctccaatctcatattggaattgttatcgtctatcatgtatcgggtagttaaggatct  16598600  --------->ATHB12 --AGP1 ->GLK1(2)                                                       --------->ARR11(3)     <---------ARR14(2) ->ARR11(3)                                                     --------->GLK1(1)      <------ZmHOX2a(1) --ARR14(2)                                                     <---------GLK1(1)    <---------TOE1(3) --ARR11(3)                                                ----------->GT1           <---------TOE2(3) ->ARR14(2)--------->ALFIN1                            --------->ATHB12     <---------At4g35610 >ZmHOX2a(2)                                     <---------AHL20(2)         --------->At4g35610 -->At4g35610       --------->MYB52(1)           --------->AHL20(2)      ---------->DOF2--------->ARR14(2)   gaattcattagatgtgggaacaaaacagagagattgtttgagaatttctatttatatagattggagaaatctcgattaagctcagataaggatttggatt  16598700                              --------->ARR14(2)                             <---------At4g35610                             <---------ATHB12                   <-----------GT1       <---------ALFIN1        --------->ZAT14          <---------ANAC46   <---------ZAT2                   --------->ANAC58       <---------MYB52(1)    --------->At4g35610              --------->ANAC58 <----------DOF2  <----    <---------TOE2(3)        --------->ZAT2        <-----------GT1     <----------DOF2       <-------   tgaacttacgttgtttatattttacttctccagctccgatgctccaactcaattcacaattcgtaagtaaactctttcaatctttagtttcagtttcagg  16598800  Previous    Next  AGI:  At2g39770.1    Description:  CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase. similar to GDP-mannose pyrophosphorylase, putative [Arabidopsis thaliana] (TAIR:AT3G55590.1); similar to GDP-mannose pyrophosphorylase [Malpighia glabra] (GB:ABB53473.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69137.1); similar to GMPase [Medicago sativa] (GB:AAT58365.1); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) Range:  from: 16595780    to: 16598063    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g39780.1    Description:  RNS2 (RIBONUCLEASE 2); endoribonuclease. Identical to Ribonuclease 2 precursor (RNS2) [Arabidopsis Thaliana] (GB:P42814;GB:Q42136); similar to ribonuclease T2 family protein [Arabidopsis thaliana] (TAIR:AT1G14220.1); similar to unknown [Populus trichocarpa] (GB:ABK92675.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) Range:  from: 16598300    to: 16600853    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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