Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                                                             <-------                                                                                          --------->ARR11(3)                                 <---------AHL20(2)                                       <---------ARR11(3)  --------->ZAT14                --------->AHL20(2)       <---------ZAT18            ---------->DOF2  <---------ZAT14   <---------YAB1                        --------->ZAT18 ---------->DOF2 --------->GLK1(2)   tctctacagtttcagttcaattactatacatcgatttaaacacatctactaaatctatagttcacaagtagagaataaaagaagcatcaaagtatcttta  16580200                  <---------GLK1(2)                <---------YAB1         <---------DOF5.7(2)    ------>ZmHOX2a(1)                       ---------->DOF2 ------->GLK1(1)--------->ICU4         --------->GLK1(2)                                  ---------->DOF2 --------GLK1(1)------>ZmHOX2a(1)     <---------GLK1(2)         <---------GLK1(2)        --------->AtMYB61 ---DOF2 ---------->DOF2       <-----------HVH21            <------ZmHOX2a(2)   ----------->GT1   gatttcctagttaaagtcctgattcttctgttctgtcagagaatctcaaagtgattcaaacgatcaaattcttgagctatatttgtaaaaaccaaagcta  16580300                                                                                               ------                                                                                   <-----------RAV1(1)                                                                               <---------At4g35610                                                                               --------->ZAT2  ------                                                                               <---------ZAT2  ------                                                                               --------->At4g35610                                                                               --------->GLK1(1)                                                                               <---------GLK1(1)-----                                       ----------->GT1                      --------->LBD16    ------                          <---------YAB1                                 --------->MYB52(1)    ------                 ---------->DOF2  <<<<<<<<<MYB98        --------->MYB52(1)<---------LBD16     -------            --------->ANAC58    <---------YAB1     --------->MYB46(3)  --------->ZAT18        -------            --------->ANAC58--------->ARR11(3)   <-----------GT1       <---------ZAT14        <------NtERF2       <---------MYB46(3) <---------TOE1(3)  --------->TOE2(3)         --------->ZAT14        -------      <---------ANAC46    <---------TOE2(3)  --------->TOE1(3)        --------->ALFIN1       ------>NtERF2      <---------------------WRI1----------->GT1 ---------->DOF2     <---------ANAC46<-------GAMYB <--   --------->ALFIN1  ----------->GT1 ---------->DOF2<---------------AGL15------->TEIL      <---------ABI4(2)   ttcaagtggtggataagcacaaagcgttaagattatgttaaaagtaacattaaaccactaatggagattgaagtgtaccggagctctgttgatggcaccg  16580400                    --------->ARR14(2)                    <---------ARR11(1)                    <---------ARR11(3)               <------NtERF2             <---------ATERF1(2)             --------->DEAR3(1)             --------->ATERF1(2)            ------>NtERF2            --------->ATERF1(1)            <------NtERF2            --------->DREB2C(1)           <---------RAP2.6(1)           <---------RAP2.3(1)           <---------RRTF1(1)           <---------ATERF1(1)           ------>NtERF2          <---------RRTF1(2)          <---------RRTF1(3)          <---------DEAR3(1)          <---------RAP2.3(2)         <---------LBD16        <-----------RAV1(1) --->DEAR3(1)<---------RAP2.6(2) --->At1g77200 ------>NtERF2 ----->HVH21--------->At4g35610 ---->MYB52(1)------>NtERF2 --->MYB46(3)<---------ANAC46               <-----------HVH21 --->DREB2C(2)--------->RAP2.6(2)          <---------ANAC58                                  <------- -->ORA47(2)<---------At4g35610            --------->ANAC46<---------At4g35610  <------MYB46(1) -->DEAR3(2)<---------DREB2C(1)    <---------ANAC46       --------->GLK1(2)     <------MYB83 -------- -->ATERF1(1)<---------DEAR3(1) ----------->HVH21----------->RAV1(1)  <------ZmHOX2a(1) >>>>>>>>>TBF1 -------DEAR3(1)   <---------CCA1(2)       <---------ANAC58--------->At4g35610<---------WOX13(1)   acggtggaaactgcggcggccatatctcaagactgcgacgagtatgcgtcacaacacaagaagctgaagagaggaattagattggtagaagaagaagctt  16580500                  --------->ANAC58          <---------ANAC46          <---------ANAC58                                    <---------MYB52(1)          <---------ANAC58                                    --------->DOF5.7(2)        <------MYB83                                  --------->MYB46(3)        <------MYB46(1)                              --------->ANAC58       <---------AtMYB61                             --------->ANAC58    <-----------RAV1(1)                             ------->GAMYB   --------->ARR11(3)                --------->DAG2--------->MYB46(3)                              <- --HSFC1(2)       --------->ANAC58  ---------->DOF2<---------MYB55(2)                  --------->ZAT6 ->HSFC1(2)<XXXXXXXXXXXXXXXXXXXXMIR837-5P          <---------MYB111(2)      <---------REM1(2)   -----   agagagatgttggtgtgagcaagaaactgagagatttataaagcgagtgatcaacaaccaattcgttatctcttcgtcttcaaggcttaactctctgatc  16580600                                                                    ------->MYC4                                                                    <-------MYC3                                                                    ------->PIF5                                                                    <-------MYC4                                                                    <-------PIF5                                                                    ------->MYC2                                                                    ------->MYC3                                                                    <-------MYC2                                                                   <---------O2                                                                   --------->TGA1a                                                                   --------->O2                                                                   --------->PIF3(3)                                                                   <---------PIF3(3)                                                                <---------WRKY45            <---------WOX13(1)                                  <---------WRKY38(1)           --------->ARR14(2)                  --------->ARR14(2)  <---------TGA1a           <---------ARR14(2)                  <---------ARR14(2)<---------ALFIN1         --------->LBD16             --------->ATHB12        <------MYB83        <---------ANAC46            <---------YAB1         <---------WOX13(1)       <---------LBD16              --------->ICU4        <------------CBF   --------->ANAC46               <---------At4g35610    --------->ATHB12 <---------ALFIN1          <---------O2       <------ZmHOX2a(1) <---------WRKY12 --------ALFIN1            --------->O2    <------ZmHOX2a(1) <------MYB46(1)        <---------TOE2(3) ->ZmHOX2a(2)             *TSS <------ZmHOX2a(1)        <---------YAB1      <---------YAB1  <--------   gccacacgatgcggattggccaagttgccacgaggaagatgattaggaggattctattttgattggtccacgtggaatatgtttatgaggttgtcgtcaa  16580700                                                        <---------ICU4                                                        <---------AHL20(2)                                                    --------->AHL20(2)           --------->ATHB12                                                  --------->TOE2(3)              <---------ICU4                                               <-----------GT1         <----------DOF2               <---------ATHB12            <---------YAB1  <-----------GT1       -------->ATHB1    --------->GLK1(2)  ---------->ID1   <---------YAB1 --------->AHL20(2)        --------->YAB1 ---HVH21  ------------>CBF             --------->ICU4 <---------AHL20(2)       <---------YAB1   atggctaatctgtgccaatggatttgttttttttttcaagtgaagattataacattatttattaccacatatgctttggaaaatcattgttttttttttt  16580800                                              <---------ALFIN1                --------->ANAC58             --------->ZAT14                --------->ANAC58             <---------ZAT14              <--------P             <---------ARR11(3)           <---------TOE2(3)         <---------GLK1(2)                                        <------           <---------TOE1(3)         --------->ARR11(3)                                       <------      <------ZmHOX2a(1)              --------->ARR14(2)                             <---------ICU4    <---------TOE2(3)  --------->YAB1<---------ARR14(2)                             --------->YAB1   ttttttgaggattgaggtaagccattcatatgtgatcaagatacttctacactcttcttcatacgataacattccaaaattttggataatgacattgctt  16580900                                                                                ----------->GT1      <---------ICU4                <------MYB46(1)                       <---------YAB1      --------->YAB1               <---------AtMYB61               --------->AHL20(2)     --------->ICU4                <---------MYB46(3)              --------->AHL20(1)   --------->YAB1               --------->ATHB12                   <---------AHL20(1)               < ---ANAC58        --------->MYB52(1)<------MYB83    <---------ANAC58<---------YAB1                 -- ---ANAC58      <---------MYB52(2)<---------WOX13(1)<---------ANAC58<---------AHL20(2) <-----------GT1   atcgataataatgttccaaataaccgatgtaaactgattggtggagagaaattggcttagccaatagaatataattctaattttgttatatacaactcta  16581000      ----------->GT1                                                    <---------DAG2  ----------->RAV1(1)              --------->YAB1               <---------AHL20(2)   --------->ANAC46 -------TEIL                    <-----------GT1    ----------->GT1       <----------DOF2  ----------- ------->CCA1(2)     <-------GAMYB --------->TOE2(3)            <---------ICU4 <----------DOF2   gatacaacaggtatcaagtatgtggttatcaaattaaccatattgtactaaaccgctaaaaactaattaatgcaactttttctttacacaaaatgtaaaa  16581100  Previous    Next  AGI:  At2g39730.1    Description:  RCA (RUBISCO ACTIVASE). Identical to Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RCA) [Arabidopsis Thaliana] (GB:P10896;GB:Q39197;GB:Q39198;GB:Q940T8); similar to ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative [Arabidopsis thaliana] (TAIR:AT1G73110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15686.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83893.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21606.1); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 16577824    to: 16580626    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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