Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->LBD16                                                                                   <---------LBD16                                                                                --------->CCA1(2)                                                                                =====================                                                                                <------ZmHOX2a(2)                                                                               <---------ARR11(3)                                                                               --------->ARR14(2)                                                                               --------->ARR11(3)                                                                               --------->AGP1                                                                              --------->GLK1(1)                                                                              --------->At4g35610                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                          ----------->RAV1(1)                                                                        <---------At4g35610          --------->YAB1        <------ZmHOX2a(2)                       --------->At4g35610       --------->YAB1          --------->ARR14(2)                       --------->ZAT2      <---------YAB1           <---------ARR14(2)                      ----------->RAV1(1) ------------>AtSPL8     --------->DAG2                              --------->At4g35610    --------- ------------>AtSPL3    ---------->DOF2                            <------ZmHOX2a(1)--------->ANAC46 -------ICU4       <---------At4g35610         --------->HSFB2a(2) ====================HOX2a_HOX2a ---->GLK1(2)      --------->At4g35610       <---------LBD16--------->At4g35610<---------ARR14(2)   tcagtaccatcatcgtaatacatctgaaaagcagatcgatctaaaccttcggaaacaacatcagaagaaggagcagcagcagatccacggagaacaataa  16575500                    <---------ANAC58                    <---------ANAC58                    <---------ANAC46      <------ZmHOX2a(1)                               >>>>>>>>>TBF1                 <---------ANAC58        <------MYB83                            <---------AtMYB61                 <---------ANAC58        <------MYB46(1)    <---------ANAC58     --------->ALFIN1            --------->ATHB12           <--------P           <---------ANAC46   <---------ANAC46          <------ZmHOX2a(2)          <---------MYB46(3)     <---------ANAC58   <---------ANAC58     -        --------->GLK1(1)        --------->ICU4     <-------GAMYB              <---------ANAC58    <- ============HOX2a_HOX2a       --------->MYB52(1)  <---------ZAT6   ---------->DOF2   <------ZmHOX2a(1) >YAB1<------ZmHOX2a(1)     --------->ANAC46 --------->ALFIN1  <-------TEIL<---------ARR14(2)>>>>>>>>   ctggattaggagatcgattgcttcgtgtacgagtaacgatggtaggagtgggactgttatcggcgtgcatagaagcggatggggtggaggaagaagaaga  16575600                                            <---------ANAC46                                            --------->ALFIN1                                            <---------AtMYB61                                          <---------MYB46(3)                                         <---------AtMYB61                                         <---------DEAR3(1)                                         --------->ALFIN1                                       <---------MYB46(3)                                      <---------AtMYB61                                    <---------MYB46(3)                                   <---------AtMYB61                                   --------->ALFIN1                                 <---------MYB46(3)                                --------->ALFIN1                              <---------ANAC46                              <---------ANAC58                                                      <                     <------NtERF2 <---------DEAR3(1)          --------->ALFIN1                     -              --------->ALFIN1<---------ANAC58 <---------REM1(1)     <<<<<<<<<<GATA-1               <  <------ZmHOX2a(1)<---------DEAR3(1) <---------DEAR3(1)     <------MYB46(1)                    <---- -------->ALFIN1  <---------At4g35610 --------->ALFIN1       <------MYB83                    -------- -----ZmHOX2a(1) <---------PCF2 <---------AtMYB61           <---------AtMYB61                <------- >TBF1      --------->ALFIN1 --------->ATHB12<---------MYB46(3)----------->GT1       <XXXXXXXXXXXXXXX   aggaggagggaagcgagtggggctgcgatgttgagtggtggtggtggtggtgaaggaatcggaaggtgtgaaatcgagaggctcttggatgagttcgagg  16575700                                                                                --------->ANAC58   --                                                                                --------->ANAC58  ===          --------->WOX13(1)                                                --------->HSFB2a(2)   ---     <-----------HVH21                                                      <---------HSFB2a(2)  ====    --------->DEAR3(1)                            --------->At4g35610     <------ZmHOX2a(2)      ---- --------->AtMYB61                            --------->ARR14(2)          --------->CCA1(2)      <--- ---------ABI4(2)                             --------->GLK1(2)          --------->ARR14(2)      <--- -------->MYB46(3)                            ------->TEIL               --------->ARR11(3)     <---- ---------MYB55(2)                            <---------ARR14(2)         <---------ARR14(2)     ----- --ZmHOX2a(1)<---------ICU4              --------->MYB52(1)              --------->AGP1   <---------ARR14(2) ->HSFB2a(2) --------->YAB1        --------->GLK1(1)            ----------->RAV1(1)   --------->YAB1 --HSFB2a(2)<---------ATHB12       <---------GLK1(1)           XXXXXXXXXXXXXXXXXXX>MIR172B*     <---- XXXXXMIR865-3P                   --------->ARR14(2)  --------->REM1(1)  <---------ARR11(3)     -----   aaaccaccgtcgcaatcagggcaagagattgaatcggaaacccaaacgaatcggctacaactatagcaccagtaagatccagaagccatgagaataggga  16575800         <------ZmHOX2a(1)       ----------->GT1    ------------------------>ANAC81 ---------->DOF2 --------->HVH21 ===============HOX2a_HOX2a --->ZmHOX2a(2) ===============HOX2a_HOX2a        >>>>>>>>>TBF1              <---------ARR14(2) ----->At4g35610               <------ZmHOX2a(1)       <---------HSFB2a(2)                       <--- ------At4g35610            <---------LBD16            --------->HSFB2a(2)              --------->AHL20(2) ---ZmHOX2a(2)         <---------ARR14(2)            ----------->RAV1(2)                <---------AHL20(2) -----ARR11(3)         --------->ARR14(2)           --------->ARR11(3)               <----------DOF2 ---->ARR14(2)         <---------ARR11(3)  ----------->GT1    --------->ARR14(2)<---------WOX13(1)  *TSS -----ARR14(2)         --------->ARR11(3) ----------->GT1    <------ZmHOX2a(1)--------->ATHB12 <----- ---->ARR11(3)        <---------CCA1(2)   <---------YAB1    ----------->ARR10<---------YAB1    <-----   tctgaaagagaggaaaatgaaatcaaatcttcaggaagaagaagatgataaaaacatctgggaggatttgggatttgatatgattgacttttaatttgag  16575900                                                           ------->GAMYB                                                           --------->DEAR3(1)                                                          <------------AtMYB77             ------>ZmHOX2a(1)                                                         ------>MYB46(1)                  <---------ALFIN1                                                         -------->P                    <---------ALFIN1                                                         ------>MYB83              --------->MYB46(3)                                                        --------->MYB52(1)       <---------ALFIN1                                                        ------>MYB46(1)          --------->ANAC46                                                        ------>MYB83<---------ANAC55(1)--------->AtMYB61                                                      --------->MYB46(3)         --------->AtMYB61                                                      <---------MYB59      --------->bZIP60(1)                                                     --------->ANAC58      <---------bZIP60(1)                                                     --------->ANAC58    <---------At4g35610                                                     --------->ANAC46    --------->At4g35610    <----        <------ZmHOX2a(1)                      <---------ANAC58     <---------ANAC58<---------ALFIN1 --------->MYB52(1)                            <---------ANAC46     <---------ANAC58--------->DEAR3(1) ---ZmHOX2a(1)                                 <---------ANAC58     <---------ANAC46--------->AtMYB61 ----TOE1(3)         --------->ALFIN1     <------------CBF--------->DEAR3(2)    --------->MYB46(3) ----TOE2(3)     <------ZmHOX2a(1)       <---------GLK1(2)--------->MYB46(3)<-----------HVH21 ------>ZmHOX2a(1)   gataaacggaggagaagaaggaggtgttaacaagaagattacagaattggcttatacccaaccgtccatttcgtgtgctgtcaccaccacctcctcctct  16576000                                                                                                 <---                                                                                                 ----                                 <-----------GT1                                               <-----                           <---------AHL20(2)                                          <-----------GT1                           <---------YAB1                                           --------->YAB1                          --------->AHL20(2)                                        <---------ICU4  -                          <---------AHL20(2)                                  --------->LBD16 -------                   <------MYB83--------->AHL20(2)                           <---------LBD16-------->P                   ----------->GT1                                        <---------At5g28300--------                   <------MYB46(1)  ----------->GT1                      <-----------GT1 <---------MYB111(1)                 <--------P--------->AHL20(2)                         <---------MYB46(3) <---------MYB52(2)       <-----------GT1   --------->YAB1                               --------->MYB52(2) --------->MYB46(3) ------DOF2------>ZmHOX2a(1)   <---------AHL20(2)                   <---------MYB52(1) <---------ICU4   ttttttttttttcctccttgttggtaattttaattaaacggttttttttttttttttgaaaattgaaactgtttgttaccctgaaataataactacccat  16576100                                                                                                  ---                                                                                                <----                                                                                              <------MYB46(1)                                                                                              <------      <---------ATHB12                                                                   --------->DAG2   <---------ALFIN1                                                                     ---------->DOF2 ------ALFIN1                                        ----------->GT1              ----------->RAV1(1) ----->AtMYB61                                   --------->DAG2                  --------->MYB46(3) ------HVH21                <---------TOE2(3)   ---------->DOF2                 ------>MYB46(1)<----- -------->ANAC46       --------->AHL20(2)  >>>>>>>>>ARR2                       ----------->RAV1(1)--- -->ANAC46            <---------YAB1      --------->ATHB12                 <---------WRKY18(1)<------MYB83 ->MYB46(3)        <---------YAB1        <---------YAB1          ---------->DOF2------>MYB83 --------   cacccccactaattcatatttttgattatttagattagtgattttgattgtaaagtggtaaaaaaaaaaaagagtcttgaccaacaacaaaaaagtcggt  16576200                                                                         --------->ATHB51                                                                         --------->ATHB12                                                                         -------->ATHB1                                                                    <---------ANAC46                                                                    <---------ANAC55(1)                                                                    <---------ANAC58                                                                    --------->ANAC55(2)                                                                    <---------ANAC55(2)  ---------->DOF2                                                   <---------ANAC58 ------>ANAC58                                                    <-----------GT1 ----P----------->GT1     <---------ARR14(2)                  --------->AHL20(2)                    < ---DEAR3(2)              --------->ARR14(2)                  <---------AHL20(2)                    < ----MYB52(1)           <---------AHL20(1)               <---------YAB1 <---------YAB1      --------- ------>ANAC58    <---------ANAC58          <-----------GT1  --------->AHL20(2)       --------->YAB1- ->MYB59          <---------ANAC58          --------->YAB1   <---------AHL20(2)  --------->AHL20(2) -   aagtaaaagagtaacaaattgcttaacatatttgcaaaactataaataacaatgtgtttttgattaaattacgtattattggataaaataacaataaact  16576300                        <---------WRKY38(1)                        <---------WRKY12                        <---------WRKY45                       <<<<<<<<<<WRKY6                       --------->WRKY18(1)                 --------->ATHB12              ---------->DOF2          <---------ANAC58      <---------ANAC58 <<<<<<<<<<WRKY26                    ----------->GT1      <---------ANAC58 <<<<<<<<<<WRKY11             <-----------HVH21 ---------AHL20(1)     <<<<<<<<<<WRKY43       --------->CCA1(2) ---------AHL20(2)     <<<<<<<<<<WRKY38      --------->ARR11(3) >AHL20(2)<---------ANAC58   ----------->GT1 <---------ARR11(3) -------->ARR11(3)   <------MYB83        ---------->DOF2   <------MYB46(1)                ----------- -------->AHL20(1)   <------MYB46(1) --------->TOE2(3)     <------MYB83       ---------->DOF2    ----   aaaatattgtttgcttaaaagattggtcaactagttaaaacttaaaagatttagggtcatttggtttatattctcttaatgaaagtatagaagaaaaaaa  16576400  Previous    Next  AGI:  At2g39720.1    Description:  RHC2A (RING-H2 finger C2A); protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G59550.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72193.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Protein of unknown function DUF1117 (InterPro:IPR010543); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 16574287    to: 16575900    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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