Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->TOE2(3)                                                                                           --------->ANAC46                                          ------>ZmHOX2a(1)                             <---------ARR14(2)                                      --------->ARR14(2)                                --------->ARR14(2)                                      <---------ARR14(2)                             --------->ANAC55(2)                                     --------->GLK1(1)                               <---------ANAC55(2)   <-----------HVH21           --------->MYB52(1)                                 <---------ATHB12  --------->ANAC58            ------->GAMYB   <---------AHL20(2)              --------->YAB1  --------->ANAC58           <---------MYB46(2)                              <---------ATHB12  --------->ANAC46           <---------MYB52(2)                            --------->WOX13(1)  --------->bZIP60(2)        <---------MYB55(2)                          <---------At4g35610 ->HSFB2a(2)  <-----------GT1--------->MYB46(3)                          --------->At4g35610--------- --HSFB2a(2)<----------DOF2 <---------At4g35610                         --------->ANAC46------->TEIL   aaccaagtcacgagctttacaatacatttcaactaacgcagttcctatataaacatcagactcaagacccatctcagcaatcaaatcatgtatccgtaaa  16528200                          --------->ANAC58                          --------->ANAC58                   --------->ANAC46                  <---------LBD16                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                 --------->CCA1(2)                                                          ---------                 --------->ARR14(1)                                                        --------->ANAC46                <---------AGP1                       <---------ANAC58            ------>NtERF2 ------                --------->ARR11(1)                <---------ZAT14                ----------->RAV1(1)                --------->AGP1           ----------->GT1                        --------->ANAC46                <---------ARR14(2)      --------->DAG2         <------ZmHOX2a(2)----------->HVH21----                --------->ARR14(2)     ---------->DOF2         ======================HOX2a_HOX2a <---                --------->ARR11(3) --------->ANAC58  <---------ANAC58           <---------ETT(1) ----              ----------->ARR10  ---------->DOF2  --------->ZAT14             ------>ZmHOX2a(1)------     ---------->DOF2--------->LBD16--------->ANAC58 ------->TEIL    <---------ARR11(3)--------->ARR14(2) >LBD16   <-------TEIL    --------->ANAC46      --------------->AtSPL8 <----------DOF2<---------ARR14(2)   cccttcttaaagtccatagatccggcacaagccttcaaagcaaaagtgaaactgtacttgtctggatcaatacctttctcctccgacatatacccgaaga  16528300                                                                      --------->ARR11(3)                                                                      <---------ARR14(2)     <---------At4g35610                   <---------ICU4             <---------ARR11(3)    <---------ARR11(3)                     --------->ATHB12           <---------AGP1 --------->LBD16                 <---------ARR14(2)                   --------->ARR14(2) >LBD16                          ------->TEIL                        <---------CCA1(2)    ----------- --->HSFB2a(1)                   --------->ARR14(2)              ----------->RAV1(2)    --------->YAB1 ----->GLK1(2)                  <---------CCA1(2)              <---------ALFIN1      ---------->DOF2 ------ARR14(2)             <---------ANAC46             --------->ANAC58<---------HSFB2a(2)       -- ----->ARR14(2)     --------->DEAR3(2)    <---------YAB1 --------->ANAC58--------->HSFB2a(2) <------- --->HSFC1(2)      --------->MYB52(1)------>ZmHOX2a(1) --------->ANAC46 ------>ZmHOX2a(2) -----------   atccgagagcttctctgtgcaaaccggctctcgtgtatcctctgatcattgaattccacaagacaacacctggatctcgaactgaatcaaagatgacgcg  16528400                                                                                --------->ZAT14                                                                               ----------->HVH21                                                                              --------->LBD16                                                                             <---------ANAC46                                                                           ------>NtERF2                                                                        <---------At4g35610   --------->ARR11(3)                 <---------ZAT2                    --------->At4g35610 >HVH21                               --------->At4g35610               --------->ZAT2             <- -------->DOF2 ---------->DOF2        <---------At4g35610  --------->TOE1(2) <---------ANAC58     --- --ANAC46  <----------DOF2            --------->ZAT2      ----------->RAV1(2)<---------ANAC58   <---- >TGA1 ------>ZmHOX2a(1)<---------KAN4(2)       <---------TOE2(3)       <---------ZAT2         ------   agaaaggtcctgtctttgaaagagagaataagcgtttatgagctggttatgaggtttaagacctgagactatcaagctgccgtgaacttgaagaagacac  16528500                                                                    <------ZmHOX2a(1)                                                                <---------ANAC46                                                               <------NtERF2                --------->LBD16                               ------>NtERF2               --------->LBD16                               --------->DEAR3(1)               --------->ANAC46                              <---------DEAR3(1)       <-----------GT1                  ----------->GT1     --------->RAP2.3(1)                    <-   --------->ARR11(3)                 <---------ZAT14      <---------ATERF1(1)              <--------   <---------ARR11(3)                 <---------ZAT18      --------->LBD16                  <-------- --------->HSFB2a(1)       --------->ALFIN1               --------->DEAR3(1)               <-------GAMYB --------MYB52(1)         <------ZmHOX2a(1)              <---------LBD16 ------->TEIL     <---------MYB46(3) ------>LBD16 <---------LBD16<------ZmHOX2a(1)<---------WOX13(1)<---------O2             <---------RAP2.6(2) -----LBD16   <---------HSFB2a(2)     --------->ZAT14  <-----------GT1 <-------TEIL      <---------ANAC46 --->MYB52(1) --------->HSFB2a(2)<--------P<---------AHL20(2)----------->HVH21           <---------DEAR3(1)   cggaagttcttacattcccggagcataaggaggaggttagtgtagttaattggcatttcaccggcgacgaggatgcatttgcagttttttggcggtttat  16528600                                                      <------------CBF                                                    <---------AHL20(2)                                                   --------->AHL20(2)                                                --------->YAB1                                      <                                                --------->AHL20(2)                                 <-      ----------->GT1                       --------->AHL20(2)                                   ----   ------------>MYB.PH3(1)                 <---------AHL20(2)          ---------->DOF2         ====== -----ZmHOX2a(1)                           --------->AHL20(2)     --------->AHL20(2)           ------ ---TBP          ---------->DOF2        <---------AHL20(1)        <---------AHL20(2)           <----- --DOF2 <---------MYB52(1)              --------->AHL20(1)       --------->AHL20(2)          <------ZmHOX2a(1)   aggaaaaaccgttaaatttgaaagcttcaaaattttctgtaatatataaattataaaattgaagtcatttaattagagcgatttagtttataagaggatc  16528700                                                                        <------------CBF                                                                      <---------YAB1       ------>ZmHOX2a(1)                                             <-----------HVH21      --------->TOE1(2)                                            <xxxxxxxxxxxxxxxxsmallRNA(s) ---------ICU4                                                  --------->ZAT14 --------ATHB12                    --------->ANAC58             --------->ZAT18                  <--- ----->WOX13(1)                    --------->ANAC58             <---------ZAT18 --------->ATHB12 <--- =============HOX2a_HOX2a <----------DOF2     ----------->GT1   <---------ZAT14<---------HSFB2a(1) ------>CBF              <---------ICU4 --------->AtLEC2     ---------->DOF2   --------->ICU4 <------ -ZmHOX2a(2)       <----------DOF2 --------->ANAC46     ---------->DOF2--------->ATHB12 ----------->GT1   aatcagttcctaagattaagactttaatctttagttcatgccatgaagatgtaaaactcaaagtagagcactgtcattggaatgtttgagtagtttaaac  16528800                                                                    <---------At4g35610                                                                    --------->At4g35610                                                                   <---------AGP1                                                             --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <---------ARR11(3)                    <- ------DAG2                                                  --------->GLK1(2)           <---------ICU4 -------DOF2                                                --------->RVE1(1)           <---------YAB1 -----GT1                        ----------->GT1          --------->AHL20(2)    <-------TEIL --------   tttttttttttttttttttttgaacaaagtttgagtagtttaaactaaaaccaaaaaaaaaaaaatctagagctgtagtagtttcatttcatcatttata  16528900            <-----------GT1        <---------RVE1(1)       <---------ARR11(3)       <---------GLK1(2)     ----------->ARR10                                                   <---------WRKY18(1)  <---------MYB52(1)                                            <---------ANAC58 --------->LBD16                     ----------->RAV1(1)        <---------ANAC58 ----------->GT1                     <---------DDF1        <---------ANAC58 --------LBD16                      --------->DREB2C(2)    <---------ANAC58 ->YAB1--------->ARR11(3)     ---------->DOF2<-----------GT1<----------DOF2   atccggtaagatttttatcacatctattgaaacaaagaccgacatattttctatcgccttagctttccttgagcttgaccagaaattcagagacatcaaa  16529000           <---------At4g35610           --------->At4g35610           --------->ZAT14                                      <-----------RAV1(1)              ----           <---------ZAT14          <---------YAB1 <---------GLK1(1)                           <-----      ------>ZmHOX2a(1)           ----------->GT1  --------->GLK1(1)                           ------  --------->ARR14(2)              <---------MYB46(3)           ------->TEIL                    <-----  <---------ARR14(2)     --------->ALFIN1         <---------ARR14(2)                           ------  <---------ARR11(3)   <---------ANAC46           --------->ARR14(2)                           ------ <---------CCA1(2)  --------->TOE2(2)            <------ZmHOX2a(1)                          <--------   actatatcctctctgcagaaaaccagcgtggacgagttgttattcccaagaggaaatgctctatgtatgttgttgtctatgtgtctcatacttgatggat  16529100  Previous    Next  AGI:  At2g39620.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G09040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69243.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82070.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16526046    to: 16528556    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g39630.1    Description:  glycosyl transferase family 2 protein. similar to dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative [Arabidopsis thaliana] (TAIR:AT1G20575.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69209.1); contains InterPro domain Glycosyl transferase, family 2 (InterPro:IPR001173) Range:  from: 16528822    to: 16531765    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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