Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                     ---------->ID1                          <----------DOF2        <---------ANAC58                    <---------ICU4               <---------bZIP60(2)                    --------->YAB1               <---------ANAC58                    -------->HAHB4          --------->YAB1 --------AtLEC2    --------->ICU4           <---------ICU4    <---------MYB52(1) ----DOF2     --------->TOE2(3)            <---------YAB1<---------ARR14(2)   tgcatcacagtgagaaacttaatgatcactttggaagatggtcttatcatgacttggcgtttcccttgtttctctgcattactcatgctcttgagacaat  16525300                                                                              <---------ZAT14                                                                           <---------ANAC46                                                                           <---------ANAC58                                <---------REM1(2)                          <---------ANAC58                                --------->ZAT14                        <---------ANAC46                                <---------ZAT14                        <---------ANAC58                     <---------YAB1                                    <---------ANAC58  ---------->DOF2      --------->ANAC58<---------ICU4              <------------CBF--------->YAB1<---------ANAC46   --      --------->ANAC58--------->ATHB51           <---------ICU4  <-------TEIL <-------GAMYB     -----   cgtttaagacgctagccctcaccattatcgcctctacacacataaatataagaattgcctcataagtttcatgacttgtgtgttgtgtcataaaagaatc  16525400                     ------>MYB46(1)                     --------->AHL20(2)                        <-                     ------>MYB83                     --------->TOE1(3)                            --                    --------->MYB55(1)                ----------->GT1                           <----                  --------->At4g35610                 --------->TOE2(3)                         <----                  <---------ANAC58                   ----------->GT1                            <----                  ----------->RAV1(2)              --------->MYB52(1)                           <----                  <---------At4g35610             ------->GAMYB                                 -----         <---------DAG2                          --------->MYB46(3)                             <----         <----------DOF2    ------------>CBF     <---------MYB55(2)--------->ANAC46         <-------- ------->AHL20(2) <---------ANAC58               <---------MYB52(2)--------->ANAC58         <-------- ---->YAB1      <-----------GT1               <----------ID1       --------->ANAC58  ---------->DOF2   ataaattcagactttttgttacctgccgatttcaatttcaactagattacaacaaacgttaaaattctcacgcagacaaaaactcacaaaagttacttac  16525500     <---------STY1(2) --------ARR14(2) ------->ARR14(2) -----ANAC55(1) -----ANAC58                                                    --------->TOE1(3) -----ANAC58                                                    --------->TOE2(3)  ------->TEIL    -- -----ANAC55(2)                 <---------TOE2(3)   --------->ARR11(3)             <-------TEIL    -- ---->ANAC55(2)    ----------->GT1                  --------->AHL20(1)            <-----------GT1  -- -----ANAC46  <-----------RAV1(2)                 --------->GLK1(2)    ----------------------->TaNAC69(2) -ANAC58     <-------TEIL  --------->ZAT6 --------->MYB52(1)    ------->GAMYB  --------------->AtSPL8 -ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------->GAMYB   <---------ALFIN1  <---------------AtSPL3   gtattctggctagggttcagaaggttttaaaactagggtttttttaacggagaatatatagcacaaccctaatctctcttctatgtacgttcccatttac  16525600                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                            <---------ZAT14                                                                            --------->ZAT14                                                                            --------->At4g35610                                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          ------>ZmHOX2a(2)                                                                         <---------At4g35610                                                                         --------->At4g35610<xxxxxxxx                                                              --------->WRKY38(1)    <xxxxxxxxxxxxxxx                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------                                                          xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxx                                                          xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxx                                                 --------->LBD16        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                ------->GAMYB ----------->HVH21     <xxxxxxxxxxxxxxxx                                              ------>MYB46(1) --------->WRKY12    <xxxxxxxxxxxxxxxxxx                                              --------->MYB52(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)                                              ------>MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              -------->Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             --------->MYB52(1)  <xxxxxxxxxxxxxxxxsmallRNA(se3)  <xxx                                             <---------ALFIN1<-----------HVH21    <xxxxxxxxxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)             <-----------GT1    --------->AHL20(1) --------->ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(s) ------->ANAC58                 --------->AHL20(2) <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->ANAC46                 <---------AHL20(2) <---------GLK1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i) ------->ANAC58                --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxx   tacgaaacccagtttttactgggcttaaaaaaaaaaaattaagagcccaaccggattcgaaccggtgacctattgatctgcagtcaattgctctaccact  16525700             *TSS    <XXXXXXXXXXXXXXXXXXXXXMIR864-3P xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxsmallRNA(se3) xxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxsmallRNA(l2) xxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(le3) xxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(le3) xxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(se3) >MYB46(3)<---------YAB1 xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(fl3)                           <---------YAB1 xxxxsmallRNA(l2)                                   --------->YAB1                --------->YAB1 ---- xxxxxxsmallRNA(l2)  <---------ANAC46              <---------ATHB51          ----------->GT1     ---- xxxxxxxxxxxxxsmallRNA(s) <---------ZAT14      ------------>CBF       --------------->AGL15      ---- xxsmallRNA(l2)    <---------ZAT14       <-----------GT1              <---------------AGL15    ------ xxxxsmallRNA(l2) <----------DOF2   <-----------TBP--------->ICU4  --------->GLK1(2)          <------   gagctataggctcttattgactttagtgtatactacttatatataacttaacaattatgtttctccaaaattctgttttaagtaaaataatgttctatca  16525800                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <------ZmHOX2a(2)                                                                               xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              --------->At4g35610                                                                              <---------At4g35610                                                                           <---------At4g35610                                                                           <---------ZAT14                                                                           --------->ZAT14                                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           <---------MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i)                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                         xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                      xxxxxxxxxxxxxxxx>smallRNA(se3)                                                      xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                      xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <                                               xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             -                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                -                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               x                                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxx                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------WRKY38(1)                                               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------WRKY12                                               xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------->HVH21 ----->AtLEC2                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------HVH21 ----->ANAC58                                  xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->ANAC58                   --------->ZAT14xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx --->YAB1                       ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxx ---ATHB12                    --------->ANAC46 *TSSxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxx   tgcaagtttagtatttctattagttagcatacactaaagtcaagaagagcctatagctcagtggtagagcaattgactgcagatcaataggtcaccggtt  16525900            <XXXXXXXXXXXXXXXXXXXMIR157D            <XXXXXXXXXXXXXXXXXXXXMIR157A-C        <------MYB83        <------MYB46(1)      <--------P      <---------MYB52(1)      --------->ALFIN1     <---------MYB52(1)     <-------GAMYB  <---------LBD16 xxxxsmallRNA(le3) xxsmallRNA(se3) ---------ARR14(2) -------->GLK1(2)                               --------->ARR11(3)                        <---------CCA1(1) -------->ARR14(2)                              <---------ARR11(3)                       --------->ARR11(3) xxxxxxxxxxxxxxx>smallRNA(s)                    <---------GLK1(2)                        <---------GLK1(2) xxxxxxxxxx>smallRNA(s)                         --------->ARR14(2)                       <---------ARR11(3) >smallRNA(se3)                                 <---------ARR14(2)            <---------YAB1 xxsmallRNA(i)           ---------->ID1--------->GLK1(1)                    --------->YAB1<---------RVE1(1) xxsmallRNA(s)<----------DOF2  --------->MYB52(1)                          <---------ATHB51   cgaatccggttgggctctttattttttgtctcttaacagagatttcaacagattttccaatatttctcacaatttcaattatacttagaaagattttttg  16526000                                                                           --------->YAB1                                                                           --------->TOE2(3)                                                                        <----------DOF2                                                                       --------->HSFB2a(1)                                                                       <---------HSFC1(2)                                                                       --------->HSFC1(2)                                                                       <---------HSFB2a(1)                                                                     <---------ARR11(3)                                                                    <------ZmHOX2a(1)           <----          --------->CCA1(2)                                    --------->ANAC46             ---------     ---------->DOF2      ---------->DOF2                      --------->ANAC58             ---------  --------->At5g28300   --------->YAB1--------->ARR14(2)       --------->ANAC58            <---------YAB1 ----------->GT1  >>>>>>>>>TBF1       <---------ARR14(2)     ---------->DOF2            <-------TEIL   atacagtaaaagatagagaagaagaatcaaaagaattgagtattctcagacttctatccaactacaagcaggaactttcttaattcttgatacattattg  16526100                            --------->YAB1                         --------->YAB1                      <---------------AGL15                =========================HOX2a_HOX2a                ------>ZmHOX2a(2)               <------ZmHOX2a(2)               ==========================HOX2a_HOX2a     ==================HOX2a_HOX2a                                                         <---------     =================HOX2a_HOX2a                           ----------->HVH21       ------->GAMYB     ------>ZmHOX2a(1)--------------->AGL15               --------->ZAT2            --------->TOE2(3) -------GT1   <---------ARR14(2)                          --------->At4g35610      --------->MYB46(3) >ATHB51      --------->ARR14(2)                          <---------At4g35610 <---------ANAC58 >ATHB12      --------->ARR11(3)  <------ZmHOX2a(1)  <-----------GT1          <---------ANAC58   acctctcctaatctccgatcttgactataatgagaaggatttagtggctcaagtttaacaagctgacacaatgcagcattgcttaaccacaaattacaat  16526200  Previous    Next  AGI:  At2g39590.1    Description:  40S ribosomal protein S15A (RPS15aC). Identical to 40S ribosomal protein S15a-3 (RPS15AC) [Arabidopsis Thaliana] (GB:O80646); similar to 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana] (TAIR:AT5G59850.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.2); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 16524666    to: 16525343    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g39600.1    Description:  pre-tRNA. tRNA-Cys (anticodon: GCA) Range:  from: 16525642    to: 16525713    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g39610.1    Description:  pre-tRNA. tRNA-Cys (anticodon: GCA) Range:  from: 16525847    to: 16525918    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g39620.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G09040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69243.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82070.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16526046    to: 16528556    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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