Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->YAB1   --------->ICU4   <---------ATHB12 ---ARR11(3) -->ARR11(3) -->KAN4(2) ---ARR14(2) -->ARR14(2)                                                  --------->MYB52(2) ->KAN4(1)                                                  <---------MYB52(1) --HSFB2a(1)                                              <---------MYB46(3) --GLK1(1)                                                ----------->GT1 ---TaMYB80                                        ---------->DOF2 ->HSFB2a(1)                                      --------->AHL20(2) ->GLK1(1)                                    <---------AHL20(2) --KAN4(1)                                   <---------AHL20(2) ->TaMYB80                                   --------->AHL20(2)      <-----------GT1 -KAN4(2)  --------->YAB1                --------->AHL20(2) <--------P      <---------ANAC46  <------   ccacaatgatcaaacacaataaaccatgaattggtctcagagatttattaaataaaagaatggttagttttttacctgtcttgaagggagcaatttagca  16524900                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                           --------->LBD16                                                                                           --------->ANAC46                                                                                          --------->HSFB2a(2)                    ------>NtERF2                    <-------GAMYB                        <---------HSFB2a(2)                   --------->ANAC58               <---------ZAT14                   <-----------ARR10                   --------->ANAC58               --------->LBD16               ------->GAMYB<-------    --------->TOE2(3)     <---------ARR11(3)      --------->ZAT14               --------->TOE2(3)    --------->TOE1(3)     <-----------HVH21      --------->DEAR3(1)             --------->YAB1<------  ------>MYB46(1)  --------->ANAC46             --------->ANAC46               --------->MYB46(3)  -------->P    ----------->HVH21           <-----------GT1              --------->At4g35610 <-------  ------>MYB83<---------ANAC58           --------->YAB1               ---------->DOF2     <---------LBD16 ---At4g35610 <---------ANAC58       <------ZmHOX2a(1) <---------MYB46(3)<---------At4g35610---------   gtccaaccttcaatttccttgacgccaaggtcatatcgaggactaataacaccgcagttgttaagccttccattaagctcaaccacaatcttcccggatc  16525000 ->ZmHOX2a(2) -ZmHOX2a(2) ---AGP1 -->GLK1(2) ---ARR11(3) ---ARR11(1)                                             <---------ANAC58 -->ARR14(2)                                             <---------ANAC58 --ARR14(1)                                       --------->DAG2                                <---- ---ARR14(2)                                     ---------->DOF2                             <------- --CCA1(2)             <---------ZAT14    --------->MYB52(1)                                 -------- >LBD16                --------->ZAT14    ---------->DOF2<---------ANAC46                 --------->GLK1(2)   tgtgatcatccacatattcaaactctgcaatgtaacctataaaccaaaggaaaaagtttgtgtgtttcaagtcaaaactgaacatttgagagattccaga  16525100                        --------->TOE2(3)                 <---------YAB1  <---------AHL20(2)    --------->TOE1(3) -----GLK1(2)----------->GT1            ---------->DOF2                                            <- --HSFB2a(2)--------->ANAC58   --------->TOE2(3)                                      <-----------GT1 ->HSFB2a(2)--------->ANAC58   --------->TOE1(3) --------->GLK1(1)       ----------->GT1      <------   atgttttattcgatacggtataattcccttaaacctaaaaaaaaaagagagaaatcaaacaagaagaagctcattgagtaaaacaattgtaccatgcttt  16525200                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                     ---------->ID1                          <----------DOF2        <---------bZIP60(2)                    -------->HAHB4               <---------ANAC58                    --------->YAB1               <---------ANAC58                    <---------ICU4          --------->YAB1 --------AtLEC2    --------->ICU4           <---------ICU4    <---------MYB52(1) ----DOF2     --------->TOE2(3)            <---------YAB1<---------ARR14(2)   tgcatcacagtgagaaacttaatgatcactttggaagatggtcttatcatgacttggcgtttcccttgtttctctgcattactcatgctcttgagacaat  16525300                                                                              <-------GAMYB                                                                           <---------ANAC58                                                                           <---------ANAC58                                <---------ZAT14                            <---------ANAC46                                --------->ZAT14                        <---------ANAC58                                <---------REM1(2)                      <---------ANAC58                     <---------YAB1                                    <---------ANAC46  ---------->DOF2      --------->ANAC58--------->ATHB51            <------------CBF--------->YAB1<---------ANAC46   --      --------->ANAC58<---------ICU4             <---------ICU4  <-------TEIL <---------ZAT14   -----   cgtttaagacgctagccctcaccattatcgcctctacacacataaatataagaattgcctcataagtttcatgacttgtgtgttgtgtcataaaagaatc  16525400                     ------>MYB83                        --------->AHL20(2)                        --                     ------>MYB46(1)                  ----------->GT1                              <-                    --------->MYB55(1)                --------->TOE1(3)                         <----                  <---------At4g35610                 --------->TOE2(3)                         -----                  ----------->RAV1(2)                ----------->GT1                            <----                  --------->At4g35610              --------->MYB52(1)                           <----                  <---------ANAC58                ------->GAMYB                                 <----         <----------DOF2                         --------->MYB46(3)                             <----         <---------DAG2     ------------>CBF     <---------MYB52(2)--------->ANAC58         <-------- ------->AHL20(2) <---------ANAC58               <---------MYB55(2)--------->ANAC46         <-------- ---->YAB1      <-----------GT1               <----------ID1       --------->ANAC58  ---------->DOF2   ataaattcagactttttgttacctgccgatttcaatttcaactagattacaacaaacgttaaaattctcacgcagacaaaaactcacaaaagttacttac  16525500     <---------STY1(2) ------->ARR14(2) --------ARR14(2) -----ANAC58 ---->ANAC55(2)                                                 --------->TOE1(3) -----ANAC58                                                    --------->TOE2(3)  ------->TEIL    -- -----ANAC55(1)                 <---------TOE2(3)   --------->AHL20(1)             <-------TEIL    -- -----ANAC55(2)    ----------->GT1                  --------->ARR11(3)            <-----------GT1  -- -----ANAC46  <-----------RAV1(2)                 --------->GLK1(2)    ----------------------->TaNAC69(2) -ANAC58     <-------TEIL  --------->ZAT6 --------->MYB52(1)    ------->GAMYB  <---------------AtSPL3 -ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------->GAMYB   <---------ALFIN1  --------------->AtSPL8   gtattctggctagggttcagaaggttttaaaactagggtttttttaacggagaatatatagcacaaccctaatctctcttctatgtacgttcccatttac  16525600                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                            --------->At4g35610                                                                            --------->ZAT14                                                                            <---------ZAT14                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                          ------>ZmHOX2a(2)                                                                         <---------At4g35610                                                                         --------->At4g35610<xxxxxxxx                                                              --------->WRKY38(1)    <xxxxxxxxxxxxxxx                                                              --------->WRKY12      <xxxxxxxxxxxxxxxx                                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------                                                          xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxx                                                          xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxx                                                 --------->LBD16        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                ------->GAMYB xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              ------>MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              ------>MYB46(1) ----------->HVH21   <xxxxxxxxxxxxxxxxxx                                              --------->MYB52(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)                                              -------->Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------ALFIN1<-----------HVH21    <xxxxxxxxxxxxxxxxxx                                             --------->MYB52(1)  <xxxxxxxxxxxxxxxxsmallRNA(se3)  <xxx                                            <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s)             <-----------GT1    --------->AHL20(2) --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->ANAC58                 <---------AHL20(2) <---------GLK1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i) ------->ANAC58                 --------->AHL20(1) <---------ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(s) ------->ANAC46                --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxx   tacgaaacccagtttttactgggcttaaaaaaaaaaaattaagagcccaaccggattcgaaccggtgacctattgatctgcagtcaattgctctaccact  16525700             *TSS    <XXXXXXXXXXXXXXXXXXXXXMIR864-3P xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxsmallRNA(se3) xxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(l2) xxxxxxsmallRNA(fl3) xxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3) xxxsmallRNA(fl3) xxxxsmallRNA(l2) >MYB46(3)<---------YAB1 xxxxxxxxxxxxxsmallRNA(se3)                           <---------YAB1 xxxxxxxxxxxxxsmallRNA(fl3)                         --------->YAB1                --------->YAB1 ---- xxsmallRNA(l2)      <---------ANAC46              <---------ATHB51          ----------->GT1     ---- xxxxxxsmallRNA(l2)<---------ZAT14             ------------>CBF       --------------->AGL15      ---- xxxxxxxxxxxxxsmallRNA(s) <---------ZAT14<-----------GT1              <---------------AGL15    ------ xxxxsmallRNA(l2) <----------DOF2   <-----------TBP--------->ICU4  --------->GLK1(2)          <------   gagctataggctcttattgactttagtgtatactacttatatataacttaacaattatgtttctccaaaattctgttttaagtaaaataatgttctatca  16525800  Previous    Next  AGI:  At2g39590.1    Description:  40S ribosomal protein S15A (RPS15aC). Identical to 40S ribosomal protein S15a-3 (RPS15AC) [Arabidopsis Thaliana] (GB:O80646); similar to 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana] (TAIR:AT5G59850.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.2); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 16524666    to: 16525343    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g39600.1    Description:  pre-tRNA. tRNA-Cys (anticodon: GCA) Range:  from: 16525642    to: 16525713    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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