Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->HSFB2a(2)                                              --------->CCA1(2)    <              <---------HSFB2a(2)          <----------DOF2                 --------->LBD16          -             ----------------->AGL1  --------->HSFB2a(2)           ------>ZmHOX2a(1)              <--        <-----------RAV1(1)          <---------HSFB2a(2)     ------->TEIL <---------ANAC58       ----     <---------ARR11(3)             <---------LBD16       <---------YAB1  <---------ANAC58    -------     <---------AHL20(1)            <---------LBD16   ---------->DOF2    <---------At5g28300 ---------   actgcaatatatgttgccagaagtgtaattgtgttccttcgggaacttttggacacaaagatgaatgtccttgctaccgtgatatgaaaaactccaaagg  16508300                                  <---------ICU4                                 ------>ZmHOX2a(1)                             --------->ARR14(3)                             <---------ARR14(3)                             <---------GLK1(2)            ==========================HOX2a_HOX2a  ------>ZmHOX2a(2)          --------->ARR11(3)  =================HOX2a_HOX2a ------>ZmHOX2a(2) <------ZmHOX2a(2)           --------->ARR14(2)                                   --------->YAB1 ==================HOX2a_HOX2a<------ZmHOX2a(2)                                   <-----------GT1 ---------ARR14(2)         ----------->ARR10                                   --------->YAB1 -------->ARR14(2)    <----------DOF2                                     --------->ICU4 -------MYB46(3) --------->HSFB2a(1)      <-------TEIL                ----------->GT1 ----->ALFIN1   ------->TEIL <---------ARR14(2)                    --------->ALFIN1        <---------YAB1 -->DAG2    ------>ZmHOX2a(1)<---------ARR11(3)         --------->ANAC55(2) --------->TOE2(3) ->DOF2     =========================HOX2a_HOX2a       --------------->AtSPL8  --------->WOX13(1)   -   tggatccaagtgtccttgaacgttctttgaagatcctcatcacatacatataacttctacgtactatatgtgtggaaatattaatcacattctatgtttg  16508400                                   --------->ARR14(2)                                   <---------ARR11(3)                                   <---------ARR14(2)    <---------AHL20(1)                           <-----------RAV1(1)   --------->ARR11(3)          <---------AHL20(2)      --------->GLK1(1)--------->TOE2(3)           --------->AHL20(2)          --------->AHL20(2)      <---------GLK1(1)--------->YAB1           ----------->GT1     --------->AHL20(2)<------NtERF2             <---------ARR11(3)       --------->DAG2 <---------AHL20(1)   --------->ANAC46          <---------GLK1(1)        ---------->DOF2 --------->AHL20(1)   >>>>>>>>>>>>>>>>>LFY      --------->GLK1(1)     --------->AHL20(2) -------->AHL20(2)    ------>NtERF2--------->ARR11(3)    --------->AHL20(1)----------->GT1          <   aaatatataaaataaaatcaatgcccccaatgttggaaatcttcaatgtgatatcttaatatatatcacgaataaaaaagtttaaatttctcaatctcat  16508500                                                  --------->YAB1                                                  <---------ICU4                                                 <---------ATHB12                                            <----------DOF2                                            --------->TOE2(3)                                           <---------ICU4                                     <----------DOF2                 <---------ZAT18                                  --------->ARR14(2)             --------->YAB1                 <----                                  <---------ARR11(1)            <---------YAB1          <---------MYB52(1)                                  ------->TEIL --------->YAB1 --------->YAB1          <---------ANAC46     --------->TOE2(3)            <---------ARR14(2)          <---------ICU4         <------NtERF2     <----------DOF2              --------->GLK1(2)          --------->ICU4         <---------RAP2.3(1)    <---------ICU4               <---------ARR14(1)          <---------YAB1         ------>NtERF2 ---------AHL20(2)--------->TOE2(3)  --------->TOE2(3) ----------->GT1        <---------ICU4 <-------   ttttaatctttaatctaatttcttaacacatcaacgaatctttaatctttaatcatgtagataattatcagagcacctaaacattgcgccgttttgtgat  16508600                                                                             ---------->DOF2                                                                          --------->ANAC58                                                                ------>ZmHOX2a(1)                                                               --------------->AGL15                                                               <---------------AGL15                                           ============================HOX2a_HOX2a                                           <------ZmHOX2a(2)  ----------------->AGL1    ----------->GT1                       <---------ARR14(2)  ----------------->AG  ---------->DOF2                         --------->AGP1   <----------DOF2--------->ANAC58    ------- -----YAB1                           ----------->RAV1(1)<-----------GT1 ---------->DOF2       ------- --YAB1                    <----------DOF2--------->ARR14(2)  ----------------->AGL2          -------   tatacaaagtaacatcgtgctgtttttgacttttgaaaaccacagatccaaaaactgtttactttcctctaagagaaagcaaagccgagtgagtccaagc  16508700                                                              <---------ATHB12                                                         <-----------HVH21                                                      <---------ANAC58                         <---------LBD16              --------->O2               --------->WRKY38(1)                    --------->TGA1a               --------->WRKY45                       <---------O2               --------->WRKY12                       <---------TGA1a              --------->DOF5.7(2)                     --------->DEAR3(1)              <---------MYB52(1)                   --------->DEAR3(1)                   <------ZmHOX2a(1) *TSS    <---------GLK1(2)          --------->ANAC58  <---------ANAC58      ===================HOX2a_HOX2a -->ANAC46 <-------TEIL --------->MYB52(1)        --------->DEAR3(2)        <------ZmHOX2a(2) -->ANAC58--------->ARR14(1)        --------->ANAC58  <---------ANAC46  --------->DEAR3(2)   <------- -->ANAC58--------->GLK1(2)--------->LBD16<-----------HVH21 --------->WOX13(1)       <------NtERF2   gagttttgagagattcgttgactcactaccggagaacgacgctatgtcagagaccgccgtgtcaatcgattcggaccgatctaagtcggaggaagaagac  16508800                                    <---------At4g35610                                  <---------WRKY12                                 <---------MYB52(1)                                              ----                                <-----------TGA1           <---------ANAC55(2)                 <-----                                <-----------HVH21    <------ZmHOX2a(2)                         ------                           --------->At4g35610      --------->ARR11(3)                        <------                        <---------ATHB12     --------->HSFC1(1)                               <------                      --------->WOX13(1)     --------->HSFB2a(2)                              <------                    --------->ZAT14 --------->At4g35610  <---------ALFIN1                    --------                    <---------ZAT18 <------NtERF2   <---------ARR11(3)                    <---------ANAC58                    --------->ABI4(2)        <---------HSFC1(1)                           <---------ANAC58             <---------ALFIN1  --------->ANAC46 ---------->DOF2           <---------At4g35610--------       <---------ARR14(2)<---------ICU4      <---------HSFB2a(2)   ------->TEIL <---------SPL7------- ---ID1--------->ARR14(2)--------->YAB1 <---------ARR14(2) --------->ANAC55(2)<---------------AtSPL3   gaagaagagtattctccaccggtgcaatcatctccgtcagcgaatttcgagaaagatcgacacttgatgtatttggagatgatgtacgagttgcttccgt  16508900       ------>MYB46(1)       ------>MYB83      --------->WOX13(1) ----->SPL7            --------->YAB1 ----SPL7           --------->WOX13(1)                                 ------>NtERF2 --->LBD16        <------ZmHOX2a(2)                                   --------->ANAC46 ---ANAC58 <---------LBD16                            --------->ARR14(2) ---ANAC58 <-----------RAV1(2)--------->ZAT6          <---------ARR14(2)<------NtERF2 ---ANAC55(2)    <---------ARR11(3)               <---------LBD16    <------NtERF2 ------->AtSPL8  --------->ARR11(3)           <---------GLK1(2)      --------->RAP2.3(1)           == ------->AtSPL3 --------->GLK1(1)             <---------ICU4       <---------DEAR3(1)              -- -->ANAC55(2) <------ZmHOX2a(1)            --------->YAB1         <---------LBD16           <--------   accattaccaatctcaggagatcaatcgtcttacactcgctcatttcataatctcgggtcttcattttctcggcgcaagagaccgtgttagtctctttct  16509000                                   ------->TEIL                               --------->LBD16                              <---------LBD16                   <----------DOF2 --------->GLK1(2)                  ------>ZmHOX2a(2)--------->ARR14(2)                            --------->ARR11(3)                <---------ARR11(3) <---------ARR14(2)                            <---------ARR11(3)            --------->GLK1(2) ----------->RAV1(2)                            ---------->DOF2     <--- ========================HOX2a_HOX2a                                     <-------TEIL            <--- ---->ZmHOX2a(1)--------->ARR11(3)<---------GLK1(2)                     <--------P             ------ --DOF2---------->DOF2    <-----------GT1   ----------->GT1          <---------TOE1(3)     ----------   cctctctctcaaagaatcgatctttgtttttcccctgaatctgatttagtgaatttcatctataatttctgaaggttgataaagatgttgttgcaaagtg  16509100          <---------HSFB2a(2)    ---------->ID1 ---MYB83 --------->HSFB2a(2) ---MYB46(1)         ------>ZmHOX2a(1)              <<<<<<<<<<GT-3b --->ALFIN1     <----------DOF2         ---------->DOF2 >DOF2 ------>ZmHOX2a(1) --------->MYB52(1)   ----------->GT1              <---------YAB1 -----------   ggttttgtccttccaggcctttcctactaacagagtttcactgaaagatggtatttttcttgaatttagttagaagtatgtttatgagcaaattgttaat  16509200  Previous    Next  AGI:  At2g39540.1    Description:  gibberellin-regulated family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10588.2); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Gibberellin regulated protein (InterPro:IPR003854) Range:  from: 16507944    to: 16508319    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g39550.1    Description:  ATGGT-IB (GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT); CAAX-protein geranylgeranyltransferase/ protein heterodimerization. similar to geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative [Arabidopsis thaliana] (TAIR:AT5G12210.2); similar to geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative [Arabidopsis thaliana] (TAIR:AT5G12210.1); similar to geranylgeranyltransferase type I beta subunit [Catharanthus roseus] (GB:AAP50511.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:I Range:  from: 16508701    to: 16511382    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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