Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------TOE2(3)             ---------->DOF2                                          --------->ZAT6          --------------->AGL15                                <---------AHL20(2)          <---------------AGL15                               <---------ARR11(3)          <----------DOF2                                     <---------AHL20(2)        <-------TEIL                                          --------->ARR11(3) <------MYB46(1)      <---------MYB52(1)                                      <---------AHL20(1) <------MYB83   <-----------RAV1(2)                                        --------->AHL20(2)--------->MYB59 -------->YAB1                                                --------->AHL20(1)<---------AtMYB61 ------>ANAC58                                        <---------YAB1<-----------GT1              ---- ------>ANAC58                                 <---------WOX13(1)  ----------->HVH21     <-----------GT1   actcatcaggtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacaggcc  16482900                             --------->REM1(1)                           xxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <---------ANAC58                         <---------ANAC58                  <---------ANAC55(1)                  --------->TGA1a                  ======================================bZIP_DOF                  <---------ANAC58                  --------->ANAC55(2)                  <---------ANAC46                  <---------ANAC55(2)                  <---------O2                                    ------>ZmHOX2a(2)                  --------->O2                                   <------ZmHOX2a(2)                  <---------TGA1a            <----------DOF2    <---------ARR14(2)                ---                  <---------ANAC58      --------->YAB1          --------->ARR14(2)             ------              <---------ANAC58         <---------YAB1           --------->ARR11(3)           <------- ------->HVH21<---------ANAC58 --------->ANAC46                 <---------ARR11(3)           --------   tgatggaaccaagaaggcttacgtgaggcttacaccagactatgatgctttggatgttgctaacaagatcggcatcatctaagtctatctatctctgcag  16483000                                                              <---------YAB1                                                            <-----------GT1                                                        <---------YAB1                                                      <---------AHL20(2)                                                     --------->ICU4                                                     --------->AHL20(2)                                                  <---------CCA1(1)                                                  <---------RVE1(1)                                                 <---------AHL20(1)                                                 --------->ARR11(3) ---------->DOF2                                 <---------ARR11(3) ------>YAB1                                   <---------TOE2(3)  --------->YAB1 ----->GT1                                <----------DOF2  <---------YAB1 --ZAT14               <---------ANAC46  <---------ANAC58<---------ICU4 ->ZAT14    <---------TOE2(3)            <---------ANAC58--------->YAB1 <---------MYB52(1)   ttataaagactattgtggttttgtctcttgtagtctcagttttgcttttaagatatttattattactatcatctggtaattgtagtattttggagcaaaa  16483100                                                                       <----------DOF2                                                                  --------->ARR14(1)                                                                  --------->GLK1(2)                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                <-----------RAV1(1)                              <---------ARR11(3)              --------->YAB1                                     <---------GLK1(2)             <-------TEIL                                      <---------YAB1                    ----   <-----------GT1          <---------YAB1<---------ARR11(3) --------->YAB1                 xxxxxxxxx   acgttttacaatacattcatgttgcagtttattgttgaattcaagttctatgtttttgacttatcaagattctctttttaaaactcactaacttataaac  16483200                       <---------------AGL15                       --------->HSFB2a(2)                                                      <----                 <-----------ARR10                                 <---------ANAC58             -----                 --------->ARR11(3)     --------->YAB1             <---------ANAC58   ------>ZmHOX2a(1)                 <---------ARR11(3)    <---------YAB1  --------->YAB1         --------->YAB1  *TSS                 --------->ARR14(2)   --------->ARR11(3)       <------------CBF    <---------YAB1 ------->GT1     <---------ARR14(2)   <---------ARR11(3)  <---------ALFIN1 <----------DOF2<---------- xxxxxxxxxx>smallRNA(se3)  -------->P--------->YAB1 --------->WOX13(1)  ------->TEIL  <----------DOF2   tgtaaacatacaaatgcagtatcttctctaaccagtaaatgatcataaatcgatctatcaccacatattgtttgcatctttcattatccttttatccaca  16483300                                                                           <---------WOX13(1)                                           <---------ANAC58           --------->YAB1                                       <---------HSFB2a(1)           --------->ICU4                        ----------->TGA1   <---------ANAC58    <---------TOE2(3)--------->YAB1   <---------YAB1 <---------HSFB2a(2)  --------->HSFB2a(1)    ---------->DOF2--------->YAB1 ---MYC3          --------->LBD16      <---------HSFC1(2) --------->ZAT6 --------->ATHB12          <- -->MYC3          --------->HSFB2a(2)  --------->HSFC1(2)--------->ZAT18<-------TEIL ---------->DOF2 -GT1            <---------TOE1(1)--------->YAB1         <---------ZAT18<---------YAB1      ---------   tgttgatgaatggagaagtccgagaaatgacgaaaatcagaaatttcttatccacatagaacactaaggcaatgttcattgatcatcaaaagtcttgtga  16483400                                          <---------MYB46(3)                                         <---------AtMYB61                                      <---------AtMYB61                                    <-----------RAV1(1)                                  --------->At4g35610  --------->MYB46(3)        <---------ZAT14                                  <---------At4g35610 ------>MYB83  ----------->GT1  <---------YAB1                              <---------ARR14(2)     ----------->RAV1(1)         --------->ZAT14 --------REM1(1)              --------->ARR14(2)   --------->MYB46(3)        --------->ZAT6 -->GT1              ------>ZmHOX2a(1)--------->ALFIN1------>MYB46(1)      <-----------GT1   attgtagccactatggcagtctcctcactctcaatccgctgtggtggtttctcaccaacaatctcccacaaggttaataacactgttctgattccagtct  16483500                              <---------WOX13(1)                            --------->ATHB12                       <---------YAB1                     --------->ATHB12                     --------->ATHB51                     <---------ICU4                    <---------YAB1            -------->P                             <---------ANAC58                    --------->ICU4           <-----------GT1                         <---------ANAC58                  <---------ICU4           <---------ANAC58              --------->WOX13(1)                  --------->YAB1           <---------ANAC58           <---------ARR14(2)                 --------->ICU4     --------->YAB1        --------->GLK1(2)      ---------->DOF2 <---                 <---------ATHB12  <-------TEIL  --------->ANAC46     --------->ARR14(2) ---------->ID1   ccatttctgaaaactaaaaatcattattgttcattgattcatatttcttaccagacagaaattctctgtccaaatccatcactcaaagcttgttgtttac  16483600                                                                                              <------                       <---------LBD16                                                       >>>>>>>>                 ------>NtERF2                                                      <---------ANAC46                 <---------ATERF1(1)                                                <---------ANAC58           --------->SPL7           --------->ANAC58                                <---------ANAC58          <--------P   ------>ZmHOX2a(1)                               --------->ANAC58 <---------ANAC46        <---------MYB46(3)      ----------->GT1                        --------->ANAC55(1)   >>>>>>>>      <---------MYB52(1)      <---------ZAT14                          <---------ANAC55(2)   >>>>>>>>     --------->LBD16   --------->HSFB2a(2)                             --------->ANAC46 <---------ANAC58   <---------LBD16     <---------HSFB2a(2)                             --------->ANAC58 <---------ANAC58 -------DOF2    --------->RAP2.6(2) --------->ANAC58----------->HVH21  --------->ANAC55(2)   >>>>>>>>   tttcatccggtggtaaggccgactcctcggagagtagtaagaaactaaactcttgtgacattttccttctcatacgtaatacattgacttgtgtggattg  16483700       <---------YAB1      --------->AHL20(2)         --------->At4g35610      <---------AHL20(2)         <---------LBD16     --------->YAB1              <---------At4g35610    <---------YAB1          --------->DAG2 <---------YAB1            ---------->DOF2 <---------AHL20(2)        --------->DAG2 ---WOX13(1)              ---------->DOF2                       <-----------RAV1(1) >GATA-1             <-----------------AGL1                 <---------ARR11(3)                      - >GATA-2          <---------ANAC58                          --------->ARR11(3)             --------->TOE2(3) >GATA-4          <---------ANAC58   <---------ARR14(2)   --------->ANAC58     <----------DOF2      - >GATA-3   --------->AHL20(2)    <------NtERF2            --------->ANAC58 <------ZmHOX2a(1)        -   atttttattaaaattcaatagcttaccaaaaaggcagcggaaacaattggaagagaaggcaagctcttgtgggagtaggaactttagtggcaacttcaat  16483800  Previous    Next  AGI:  At2g39460.1    Description:  ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome. Identical to 60S ribosomal protein L23a-1 (RPL23AA) [Arabidopsis Thaliana] (GB:Q8LD46;GB:O48553;GB:O80633); similar to 60S ribosomal protein L23A (RPL23aB) [Arabidopsis thaliana] (TAIR:AT3G55280.1); similar to 60S ribosomal protein L23A (RPL23aB) [Arabidopsis thaliana] (TAIR:AT3G55280.2); similar to unknown [Brassica rapa] (GB:ABB97038.1); contains InterPro domain Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633); contains InterPro domain Ribosomal protein L25/L23 (InterPro:IPR013025); contains InterPro domain Nucleotide-binding, alpha-beta plait; ( Range:  from: 16482001    to: 16483186    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g39470.1    Description:  PPL2 (PSBP-LIKE PROTEIN 2); calcium ion binding. similar to PPL1 (PSBP-LIKE PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69260.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) Range:  from: 16483294    to: 16484921    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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