Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <--------P                                                                 <---------WOX13(1)                                                                <-------GAMYB                                                               <---------MYB46(3)              ------                                                               --------->MYB55(2)             <------                                                        <---------MYB52(1)                 <---------At4g35610     <---------ANAC58                              <-----------GT1                         --------->At4g35610     <---------ANAC58--------->At5g28300      ----------->GT1 <---------AtMYB61            <---------ZAT2 ------->DOF2     <---------At5g28300     <----------DOF2  <---------AtMYB61      --------->MYB46(3)   caaagttgcttcgttggaatcactgtgaaaccagaattagactccttttggttaaaccgttttggtggttgattctgtttctcaacaactctcagcttat  16473500                                                        ------>ZmHOX2a(1)                                                       --------->TOE2(3)                                                       --------->TOE1(3)                                               <---------MYB59                                               ------>ZmHOX2a(2)                                               ================HOX2a_HOX2a                                              =================HOX2a_HOX2a                                             --------->ARR14(2)                                             <---------AGP1                                             <---------ARR11(3)                                             --------->GLK1(2)                          =====================================HOX2a_HOX2a                          ======================HOX2a_HOX2a                          =========================HOX2a_HOX2a                    ------->TEIL             <-----------ARR10                 --------->ANAC46            --------->ARR11(3)                 --------->ANAC58            <---------ARR14(2)                               <------        --------->ZAT18   ------>ZmHOX2a(2) <------ZmHOX2a(1)                                -------- ---------->DOF2 --------->ANAC58        =============HOX2a_HOX2a                         --------->HSFB2a(2) --->ARR11(3)---------->DOF2             <------ZmHOX2a(1)   --------->ANAC46             --------->HSFC1(1) ---CCA1(2)  <---------AHL20(2)---------->DOF2<------ZmHOX2a(2)       <----------DOF2     <---------HSFB2a(2)   cttgaaagagtccattaaaacgcatcgatctctcaaagacagaggaggatctaatttccttagactccatttcttttgagacctctactcttcgagaata  16473600                                                                                                    -                                <---------DAG2                                                    ---                         <---------YAB1                                                         -----                    ---------->DOF2                                                    <---------ATHB12 ---KAN4(2)     --------->At4g35610       <-----------GT1                     ----------->GT1   ----- ->YAB1      --------->At4g35610<----------DOF2                              <------ZmHOX2a(1)  -----   accagaaatgaagtaatctgcagaaagatgatagctttatgaaataacaaatcagagaaatgtcaacaagttcaatctaggagtaacaaatcaagagcaa  16473700                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                              --------------->AGL15                                              <---------------AGL15                                             ----------------->AG                                             ----------------->AGL1                                             <-----------------AGL1                                             ----------------->AGL2                                             <-----------------AGL2                                             <-----------------AGL3                                             ----------------->AGL3                                            <------ZmHOX2a(2)                                           <---------ARR14(2)                                    --------->ARR14(1)                                   <---------GLK1(2)                                   --------->ARR11(1)          --------->AHL20(2)       --------->ARR14(2)       --------->AHL20(2)          <---------ARR14(2)----------->GT1 -------->LBD16                  ----------->ARR10 --------->TOE1(2)                     <------ZmHOX2a(1) ---->GAMYB               --------->YAB1   --------->ARR14(2)   ------->TEIL             --------->YAB1 ---->ANAC58         <----------DOF2--------->CCA1(2)--------->LBD16    <-----------GT1<---------TOE2(3) --->P--------->AHL20(2) <---------YAB1  --------->DEAR3(1)---------->DOF2  ----------->GT1<---------YAB1 ---->ANAC58        --------->TOE2(3)<-------TEIL--------->GLK1(2)<---------DAG2       <---------TOE1(3)   cccagaaaataaaaaaatcaaacctttatcatcaaaagattcgccgatccaaatctgggaaaaaagaacctttttaacgagaaaatttgaaggataatta  16473800                     ----------->GT1               --------->YAB1              <---------YAB1            <---------ICU4                            <---------WRKY12                              -            --------->YAB1                        --------->MYB59--------->ATHB12         --------->TOE2(2)           <---------ATHB12            <---------ANAC58         <---------YAB1---------->DOF2 <------           <---------ATHB51            <---------ANAC58       --------->CCA1(2)   <----------ID1    -           --------->ICU4          <----------DOF2<---------TOE1(3)   ---------->DOF2    ----------->RAV1(2)       ----------------->AGL1----------->GT1      <---------TOE2(3)<---------WOX13(1)<---------MYB52(2)   gatttgacttccaataatgaaaactgaaaaatggaaactttgcttaaaattttaggtaaacgagatttgattgaaagagagaaagaaacaaacctgtgtc  16473900                                                                                           <---------AHL20(2)                                                       <------MYB83                       --------->YAB1                                                 *TSS  <------MYB46(1)--------->ARR11(3)  <---------AHL20(1)                                                 ---------->DOF2      <---------ARR11(3)  --------->AHL20(2)                                              <-----------HVH21   --------->ANAC58        <---------AHL20(2)      --------->YAB1                         --------->bZIP60(2)  --------->ANAC58    --------->ZAT6   --------->WOX13(1)                        --------->ANAC46     --------->ANAC46  <-----------GT1 -------->ANAC58                             --------->O2         --------->ANAC55(1)------------>CBF -----HVH21                                  <---------O2   <-------GAMYB         --------->AHL20(2) -------->ANAC58                       --------->GLK1(1)   --------->MYB52(2)------------>CBF  <-----   acaaacaatcacacttgttcaaattgttgaagagaagaaggaaatcgacgtcaaagttggtcagttacacgaaatctttggcaatttaacaataaaattc  16474000                           <---------ICU4                           <--------ATHB1                           --------->ATHB51                                                  --------                           --------->AHL20(2)                                               ------->TEIL                           <---------AHL20(1)     <---------AHL20(2)                        <--------                           --------->YAB1        --------->AHL20(2)                         ---------               ---------->DOF2          --------->TCP20                                     <-------TEIL             <---------AHL20(2)    <---------ANAC58                                         <--------            --------->AHL20(2)     <---------ANAC58                             <---------YAB1            <---------AHL20(2)<---------ICU4 <---------MYB52(1)      --------->AtLEC2     <---------SPL7        --------->AHL20(2)<---------ATHB12  <-------GAMYB            --------->ANAC58   -------------        <---------AHL20(2)<---------ATHB51 ----------->GT1           --------->ANAC58   <------------    <---------AHL20(2)------------>CBF ----------->HVH21   <-------TEIL      --------->GLK1(2) --TEIL--------->AHL20(2) --------->ICU4<---------PCF2 <---------YAB1--------->ANAC46   -------------   gtctgtttatttaatttaaaagagtccaataattttggcatgggaccgttatataatatgatacatcatacatgcaaagaatatgaaaacgacgtacgtt  16474100 ->HSFB2a(1) -TOE1(2)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            ---- >SPL7<---------GLK1(2)                   ------->GAMYB                                <---------AHL20(2) -TOE2(2)                                --------->MYB46(3)            <---------AHL20(2)      <----- -->AtSPL3                         <----------ID1                  --------->AHL20(2) --------->AHL20(2) ---AtSPL3     <---------AHL20(2)  --------->ANAC46                <---------AHL20(2)<---------YAB1 -->AtSPL8<---------YAB1 ---------->DOF2 <---------MYB52(2)  --------->YAB1       --------->AHL20(2)<   ctcacttggattcttattcaatttcccaaaagtttaaacgacaacaaaccatttcttaggctatcatatataatttaagtcagatttattatatgcagat  16474200                                                             <----------DOF2                                                             <---------DAG2                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                            --------->At4g35610   xxxxxxxxxxxxxxxx>smallRNA(i)                                            <---------At4g35610  xxxxxxxxxxxxxxxx>smallRNA(i)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------DAG2                                            xxxxxxxxxxxxxxxx>smallRNA(i)                  <----------DOF2                                            ----------->RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            xxxxxxxxxxx                                        <-----------HVH21xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ---                                       xxxxxxxxxxxxxxxx>smallRNA(i)                      <xxxxxxxxxxx                                   <---------SPL7<xxxxxxxxxxxxxxxxsmallRNA(s)         xxxxxxxxxxxxxxx                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxx                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     --------->HSFB2a(2)    <--                                 <---------------AtSPL8  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxx                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <---------------AtSPL3 <xxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxx                               <-----------RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(i)        xxxxxxxxxxxxxxx          <---------GLK1(2)    =========================RAV xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxx          --------->ARR11(3)<---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i) <---------HSFB2a(2)xxxxxxx   <---------YAB1          <---------------AGL15 <xxxxxxxxxxxxxxxxsmallRNA(i)        <xxxxxxxxxxxxxxx  <---------AHL20(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxx  <---------AHL20(2)    <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->At4g35610<x ----->AHL20(2)        --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i) ----ARR14(2)          <---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s)<---------ARR14(2)<xxxxxxxxxxxxx ---------YAB1    <---------AHL20(2) --------->ZAT14<---------KAN4(2)--------->ARR14(2)<xxxxxxxxxxxxx   ttattatttttagattttgttttattttaatttatgtggtacagtcacctgaagaatgacccgctttctccaatctgctagaagatgacccgctttctcc  16474300             ----------------------->TaNAC69(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            ------>ZmHOX2a(2)           <------ZmHOX2a(2)          --------->ARR14(3)          <---------AGP1          --------->ARR11(3)          <---------ARR11(3)          <---------ARR14(2)          --------->ARR14(2)          <---------ARR14(3)    <---------HSFB2a(2)    --------->HSFB2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             ------>NtERF2 xxxxxxxxxxxx>smallRNA(fl3)                                                        <---------ZAT14 ------>ARR14(2)                                          <---------CCA1(2)        --------->ZAT18 xxxxxsmallRNA(i)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxx>smallRNA(fl3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xsmallRNA(fl3)                                  <----------DOF2                  xxxxxxxxxxxxxxxx>smallRNA(s) -------ARR14(2)                <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxx xxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxx>smallRNA(fl3)     <---------CCA1(2)---------->ID1                   ---------->DOF2 xxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(i)  <<<<<<<<<<AtSR1<---------DAG2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxx>smallRNA(i)  --------->ANAC55(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->At4g35610 xxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------CCA1(2)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxsmallRNA(s) <---------SPL7    <---------DAG2 <---------DAG2 --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------->ID1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxx xxxxxxxxxsmallRNA(l2)  <---------ANAC46<----------DOF2<---------MYB52(1) <---------ZAT6--------->At4g35610 xxxxxxxxxxsmallRNA(fl3)<---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------At4g35610   aatctgctagaagatcttggagtcttacgcgtttctttctcccttttctcgctttcccttatctctcgctcatgtaatgttagagcggactgcttaactc  16474400  Previous    Next  AGI:  At2g39435.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41581.1); contains domain PTHR21726:SF5 (PTHR21726:SF5); contains domain PTHR21726 (PTHR21726) Range:  from: 16471796    to: 16473949    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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