Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           XXXXXXXXXXXXXXXXXXXX>MIR169D-G                                                                        --------->ANAC58                                                  --------->ZAT14       --------->ANAC58                                              <-----------GT1           <----------ID1                                   ------>ZmHOX2a(1)             --------->ANAC55(1)          -------                                  --------->TOE1(3)              <---------ANAC55(1)       <---------ANAC58                           --------->YAB1--------->YAB1          <---------ANAC55(2)       <---------ANAC46                    <------ZmHOX2a(1)   <---------ATHB12         --------->ANAC55(2)       <---------bZIP60(2)                   --------->ICU4 --------->TOE2(3)             <-------TEIL---------->DOF2<---------ANAC58              <---------YAB1 <----------TaMYB80  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ----------->HVH21   tttttttttgtcaattttgaaaggattactcatattccttaaatcatgttactaaactcacataaatacgtattaagccaaagacgactcttgacgtgct  16336900                                       <----------DOF2                        --------->YAB1                          <---------AHL20(2)                                  -------->HAHB4                          <---------YAB1                                      <---------ICU4                         <---------AHL20(2)                                  <---------ATHB12                         --------->AHL20(2)                                  <---------YAB1                      <---------ARR11(3)                           <---------ARR11(3)                      --------->ARR11(3)          <---------AHL20(2)         --------->ICU4    <-----                <XXXXXXXXXXXXXXXXXXXXMIR1888  ------>ZmHOX2a(1)    --------->GLK1(2)           ------ -->ZAT18      <----------DOF2     ---------->ID1--------->AHL20(2)--------->ARR11(3)<---------YAB1   ctaaaatccaattcattctttatagattttaattcttggctctttatcctatttaatatttcgccgaaaaatctttgaaatgattatctgattgtatttt  16337000                                --------->AHL20(1)                     ------>MYB46(1)                     ------>MYB83                   <---------MYB59   <---------AHL20(2)                   --------------->AGL15                   <---------------AGL15                  ----------------->AG                  ----------------->AGL2                  <-----------------AGL2                  ----------------->AGL3                                                    <--------     <---------AHL20(2)         <---------AHL20(1)                           <---------TOE2(3)      -     --------->AHL20(2)         <---------AHL20(2)                           <---------TOE1(3)     <-     <---------AHL20(1)        --------->AHL20(2)                     <---------MYB46(3)    --------- ----AHL20(2)     <-----------------AGL3        <------ZmHOX2a(1)     <------MYB83          --------- --->AHL20(2)--------->YAB1    --------->YAB1 <---------TOE2(3)       <------MYB46(1)      <---------LBD16   tttataaaaaatttgtcataaccaaatttagaattatattttaaaatttaggaatgagtttagttaagaagttggtttgaaggtatagttttttctggaa  16337100          <----------DOF2          --------->TOE2(3)       <-----------GT1 <---------TOE1(3)      <---------TOE2(3)                      --------->ARR14(2) <---------TOE2(3)     <-----------GT1                         --------->GLK1(2) -HSFB2a(2)       --------->AHL20(1)                           --------->ARR11(3) --------->DOF2   <---------AHL20(1)              <---------AHL20(2) --------AHL20(2) <---------AHL20(2)             <---------AHL20(2)               <---------DAG2 >HSFC1(1)--------->TOE1(3)      <---------ZAT6  --------->AHL20(2)            <-----------GT1 >HSFB2a(2)       --------->AHL20(2)         <---------AHL20(2)<---------ARR14(2) <----------DOF2   tttaaagtttaactttaaaatttattaacgatttagtattagattagtttattaatttgttgaaaaatctggtctattttgttacttttttcaaaaatat  16337200                                                                         ------->GAMYB                                                                        <---------ALFIN1                                                                      ------>MYB46(1)                                                                      ------>MYB83                                                                      ----------->RAV1(1)                                                             *TSS    --------->ANAC46                                                             --------->LBD16                                                            --------->HSFB2a(2)                                                            <---------HSFB2a(2)                                 <---------AHL20(2)      <---------ARR14(2)                         <---------ARR14(2)              --------->ARR14(2)                         --------->ARR14(2)              --------->MYB52(1)                        <---------GLK1(1)            ----------------->AGL1  --------->DEAR3(1)       --------->YAB1   --------->RVE1(1)        <---------ALFIN1  --------->ANAC46      <---------YAB1    --------->CCA1(1)<----------TaMYB80<---------LBD16--------->ANAC46   ggtctattttcataaaaatccctaaaatatccgaatttatcggataaacccaaaccccctatcgggaaaacccaacacaccgtctctctctcactctcac  16337300                           <------NtERF2                          <---------RAP2.3(1)                          ------>NtERF2                         <---------RAP2.3(3)                         <---------RAP2.6(2)                         <---------RAP2.3(2)                         <---------DEAR3(1)                         <---------ANAC46                         --------->ATERF1(2)                         <---------ATERF1(2)                         <---------bZIP60(1)                        <------NtERF2                        --------->ATERF1(1)                        --------->RAP2.6(3)                       <---------ATERF1(1)                       <---------ERF1                       ------>NtERF2                       --------->ABI4(2)                       <---------MYB46(3)                      <---------DEAR3(1)                     --------->ATERF1(1)                     <-------GAMYB                    <---------DEAR3(2)                    <---------MYB46(3)                   <---------At1g77200                   <---------DEAR4(1)                   <---------DREB2C(2)                   <---------DEAR3(1)                  --------->ATERF1(1)                  <------NtERF2                 <-----------HVH21                <---------DEAR3(1)                <---------bZIP60(1)                <---------ANAC46                       <---------ICU4                <---------ANAC58                --------->At4g35610  ---------->DOF2                <---------ANAC58          <---------YAB1     ------>ZmHOX2a(1)    <---------DEAR3(1)--------->ALFIN1   <---------ARR11(3) --------->TOE2(3)           <---------ALFIN1   ttcccatcggcgaaaatggcgtcggtggcggcatcatcgtcgatatcattcgctgcatcattcctcaaaatcaaagcattccctctctcccctcgcttct  16337400                <---------MYB52(1)               <-------GAMYB                                                                        -           --------->ANAC46                                                                         -         <---------ALFIN1                                                                           <        <---------ZAT18                <----------CDC5                                              -        <---------ZAT14               ------>ZmHOX2a(1)                                            <-        --------->SPL7                ----------->RAV1(2)                                          <-        --------->ZAT14            ------>ZmHOX2a(1)                                              ---      --------->LBD16             <---------ALFIN1                                               ----    --------------->AtSPL3      ------>ZmHOX2a(1)                                             <------  ------------------>SPL14     <---------ALFIN1                          ------>ZmHOX2a(1)  ------>ZmHOX2a(1) <---------ALFIN1            ------>ZmHOX2a(1)                   ------>ZmHOX2a(1)  <---------ALFIN1<   tccccatccgtacactccgttgctctgtctcctcctcctcctctgagcccattgaattcgacatctccttcgctcctcccaaacccaaaccctcctccac  16337500           --------->ANAC58         <---------ALFIN1        --------->ATERF1(1)        ----------->HVH21        <------NtERF2       <-----------HVH21       <---------ATERF1(1)       <-----------TGA1       ------>NtERF2      --------->O2      --------->bZIP60(1)      --------->bZIP60(2)      <---------bZIP60(1)     --------->ATERF1(1)     --------->RAP2.3(1)     <------NtERF2     --------->RRTF1(1)    <---------ORA47(2)    <---------RAP2.3(1)    <---------ERF1    <---------RRTF1(1)    <---------RAP2.6(1)    <---------ATERF1(1)    ------>NtERF2    <---------DEAR4(2)   --------->DEAR3(1)   <---------RRTF1(3)   <---------RAP2.3(3)                                  <------NtERF2   <---------RAP2.3(2)                                <---------bZIP60(1)   <---------DEAR3(1)                                 <---------ATERF1(2)  <---------ABI4(1)                                   --------->bZIP60(1) -------->TGA1a                                       <---------RAP2.3(3) -------->ANAC46                                     --------->RAP2.6(3) ---------O2                                       ----------->HVH21 -------->O2                                       ----------->TGA1 --------At5g28300                              --------->ICU4                       <---------ZAT2 --------LBD16                          <---------SPL7--------->ANAC46              ------>ZmHOX2a(1) ------>MYB52(1)                       ------>ZmHOX2a(2)<---------ZAT18           ----------->RAV1(2) ------->HVH21--------->ANAC46       --------->ARR14(2) --------->ZAT18         ------->GAMYB ---ALFIN1 --------->ANAC58   <<<<<<<<<NAM      <---------ZAT6                 --------->MYB46(3)   < ---------TGA1a    --------->MYB46(3)<---------ARR14(2)------>NtERF2      --------->TOE2(3)      ----   tcacggcggcgtcacccctcaacaactcttcatcccttggatcgtccgtagtgatgacggcactctcaaactccaatctcaacctcctgctcgtttaatc  16337600                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              -------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                           --------->MYB46(3)                                                                                          ------>NtERF2                                                                                          <---------ATERF1(1)                                                                                         --------->DEAR3(1)                                                                                         <---------ALFIN1                                                                                       <---------ATERF1(1)                                                                                       ------>NtERF2                                                                                       --------->LBD16                                                                              ------>ZmHOX2a(1)------        --------->DEAR3(1)                                          --------->ANAC58  --------->ANAC58     --------->ANAC58                                               --------->ANAC58  --------->ANAC46     --------->ANAC46                    ----------->GT1            --------->ANAC46  --------->DEAR3(1)     --------->ANAC58         --------------->AGL15             --------->TOE1(3)     --------->ANAC58 ---------ALFIN1              <---------------AGL15             --------->TOE2(3)    <---------LBD16 ----->ANAC46  ------>NtERF2 ----------------->AGL2           -------->P-------->P  ------>ZmHOX2a(1)   cacaacctcgccatcgatgccactactcaaaaccctaagaagaaagataaatctaagaagaaacaacctcaagctacctcctcttcctccgccaccacca  16337700                                                         <------MYB83     --------->At4g35610                                 <------MYB46(1) ------->ABI4(1)                                        <---------AtMYB61 ---->NtERF2                                            <---------TOE2(2) -------ALFIN1                                          <---------TOE1(2) ---->GAMYB                                            <--------P ------>DEAR3(1)                                     <---------ANAC46 ------>DREB2C(2)                                    <------NtERF2 ----->DEAR4(2)                                     ------>NtERF2 ---->ABI4(1)                                      <---------ANAC46 ----ALFIN1--------->At4g35610                    <------NtERF2                                   --- --->AtMYB61                                      --------->ATERF1(1)                             --- ---MYB55(2)                                     <---------RAP2.3(1)                   --------->TOE2(3) -->MYB46(3)                                    <---------RAP2.3(2)                    --------->TOE1(3) -ALFIN1   <---------At4g35610--------->ANAC58  <---------DEAR3(1)                     --------->AtMYB61 >DEAR3(1) --------->ZAT2     --------->ANAC58  <---------RRTF1(3)                   -------->P ----- >AtMYB61  <---------ZAT2   ---------->DOF2 ---------->DOF2   <-----------GT1---------->DOF2 -------- --->DEAR3(1)    --------->ZAT6   ---------->DOF2<---------DEAR4(2) --------->YAB1 --------->MYB46(3)   ccgcctcatctccagcttcacactcagaggtaaagccaaagctatccaaagcggcgcgtaggttttacaatgagaattttaaagaacaacctcaacgttt  16337800  Previous    Next  AGI:  At2g39140.1    Description:  pseudouridine synthase family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68905.1); contains InterPro domain Pseudouridine synthase, Rsu; (InterPro:IPR000748); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) Range:  from: 16337261    to: 16340438    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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