Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------AHL20(2)                                                                             <---------AHL20(2)                                                                            <---------AHL20(2)                                                                            <---------AHL20(1)      -                           <---------ZAT18                    --------->GLK1(1)       --------->AHL20(2)               ----------->GT1                           <---------LBD16    --------->AHL20(1)     --  <---------ZAT14          --------->ETT(2)  <-----------GT1 <---------GLK1(2)    <---------YAB1   -- ->ARR11(3)   <---------TOE2(3)    ------>ZmHOX2a(1)   <----------DOF2      --------->AHL20(2)  <----   tgagaacacttgaatgaaggaaaaatttgtccacatcctgttgttattttcgattcactttcggaatttcatagctaatttattctcatttaatacaaaa  16247900               <---------ZAT14               --------->ZAT14           <---------------AtSPL8           <---------------AtSPL3       --------->AHL20(2)       <---------AHL20(2)       <---------AHL20(1)       --------->AHL20(1)      --------->AHL20(2)      <---------AHL20(2)  --------->AHL20(2)                                            ------>ZmHOX2a(2) ----->ZmHOX2a(1)                                         <-------GAMYB ------->TOE2(3)                <---------ANAC46          --------->At4g35610 --------->ZAT14 ------->TOE1(3)       <----------DOF2      --------->AHL20(2)<---------AGP1  <---------ZAT14      -- -----ARR11(3)<-----------GT1 <---------ANAC46            <---------At4g35610 <---------ZAT18 -------   tccttaaattaaatttgtacagtacctttgttttgggtatagacaattacattttaagtcagttgatctgtatcaaatactacacttacaaaatcacaaa  16248000                    <----------DOF2                    --------------->AGL15            <---------AHL20(2)           --------->AHL20(2)           <---------AHL20(1)        --------->WOX13(1)                                      --------->ANAC58      <---------At4g35610<------------CBF                       --------->ANAC58      <------NtERF2<---------ANAC58                             <---------ANAC55(2) -------->DOF2     <---------ANAC58<----------DOF2              --------->ANAC46                    - --->DOF2  <---------AHL20(2) ---------->DOF2         ----------->GT1                      ----------   gtaaaggcagcaattaattttgctttgaattgaaaagctttgagagagtaatcaaatgcttaaatcacgaaaacttacaaatttcaaaattttgtctctc  16248100                             ------------>CBF                                                 <------                     <---------MYB52(1)                                                       -------             <---------ICU4<-----------GT1                                                <-------TEIL  <---------GLK1(2) <-------GAMYB                                                   <---------ZAT2 -------->AHL20(2) <---------MYB46(3)    --------->GLK1(2)       --------->ANAC58   --------->ZAT2 >ID1        ---------->DOF2<-----------GT1                      --------->ANAC58  --------->GLK1(2)   cataaattctcttaataaaggctgttgtttttccaatttgaaaattctatttttcaaaatcaagaacaggctatggaatttcaagaagctggttcatcat  16248200                                                                           --------->ZAT2  <---------WOX13(1)                                                                           <---------ZAT2 <----------                                                                           --------->At4g35610                                      --------->RVE1(1)                   ----------->RAV1(1)                                     --------->ARR11(3)                 --------->ZAT18  --------->ATHB12                             ------>ZmHOX2a(1)                     <----------DOF2      <---------YAB1       --------->YAB1   ------>ZmHOX2a(1) <----------DOF2       <-----------GT1       ---------->DOF2 ---ICU4       ------>ZmHOX2a(1)     <---------ARR11(3)      <---------YAB1<---------At4g35610  <---- -->YAB1 --------->At4g35610 <---------CCA1(2)        <---------GLK1(2) <---------ZAT18 --------->ICU4   caagtagaatcatcttcctctgtttcctctcctatctaaaatctctttagtcttcagaaactgattatactttgtgcagcagcaagagtaaagattgact  16248300                                                                           ------>MYB46(1)                                                                           ------>MYB83                                                                           -------->P                                                   <---------ANAC58       --------->MYB55(1)                                                   ----------->RAV1(2)   <---------ALFIN1                                                   <---------ANAC46      <---------MYB55(2)                                                   <---------ANAC58      --------->MYB46(3)                                              <---------ANAC58           <---------MYB46(2)    --------->At4g35610                       <---------ANAC58           <---------MYB111(2)    <---------At4g35610                   ---------->DOF2                --------->DEAR3(1)    ------>NtERF2                  --------->AtMYB61                     <------------AtMYB15 <---------At4g35610              --------->MYB46(3)                     --------->AtMYB61 <---------ZAT18                  --------->HSFB2a(1)                    <---------MYB111(1) --------->ZAT14 ---------->DOF2  <---------HSFB2a(1)           <---------DAG2 --CBF        --------->ANAC58    <---------HSFC1(2)            <----------DOF2                  ---- ------DOF2   --------->ANAC58    --------->HSFC1(2)   ----------->HVH21--------->MYB46(3)------>ZmHOX2a(1)   ttgtgcagccgatggcacacaaagagagcaaatggaaccatcgcaaaagcttggcctgggacactgctttttccaccaaccctggtttcttcctatttcc  16248400                                                                                   ------>ZmHOX2a(1)                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                               --------->ARR11(3)                                     <---------YAB1                            <---------ARR11(3)            <---------ANAC46     --------->AHL20(2)                          ----------->ARR10          <---------ANAC46       <---------AHL20(2)       <----------DOF2<---------ZAT6     <------MYB83            <---------AHL20(2)     <-----------GT1      --------->ALFIN1     <------MYB46(1)         --------->AHL20(2)<--------ATHB1         <------ZmHOX2a(1)   <---------WOX13(1)     ----------->GT1      --------->YAB1         =================HOX2a_HOX2a --------->ATHB12         --------->TOE2(3)   --------->ICU4          ==================HOX2a_HOX2a < -->ZmHOX2a(1)           ----------->GT1      <---------ATHB12 <---------ANAC46--------->AGP1       -   tatagattggttttgtgtagaaacaaaatgttaaattatatgattccaatgattttaccactttggtttgtaggagtgttagatcctgaagaattgtttg  16248500                                            <---------ICU4                                           --------->ICU4         <---------WOX13(1)                <---------YAB1       --------->ATHB12                  --------->YAB1                                <---------ANAC58    ---------->DOF2                     <---------ATHB12                               <---------ANAC46 ---------At4g35610               ----------->GT1  <---------ALFIN1                    <---------ANAC58 -------->At4g35610        <---------TOE2(3)--------->YAB1   --------->HSFB2a(2)     <---------YAB1 <   ggagcttaaagattgacgagaatgagattgaagttgaagtaaatcataatcacacacttccttcgaaaaccgatgctcgtccaagttttgcttgggacaa  16248600                                                                        --------->ANAC46                                                                        --------->ZAT6                                                                 --------->AHL20(2)                                                                 <---------AHL20(2)                                                                 <---------ICU4            <------ZmHOX2a(2)                                    --------->ATHB51           --------->ARR14(2)                                    <--------HAHB4           <---------ARR14(2)                                    -------->ATHB1        ----------------->AGL1         --------->ARR11(3)       <---------ATHB12       <---------At5g28300             <---------ARR11(3)       <---------ATHB51       <-----------GT1       <-----------GT1<-----------GT1     --------->ICU4      <-----------GT1    <----------DOF2  <----------DOF2     --------->WOX13(1)                   <- ----------DOF2--------->LBD16     ---------->DOF2    --------->ATHB12<-----------GT1    ------>ZmHOX2a(1)   tgctttttttaccgatccaggtctcatctttttacttcaaagttctttaccctacttgattagtcaattatttcacactattccactattcctctcatat  16248700          --------->TOE2(3)          --------->TOE1(3)                                                                     <----     --------->YAB1                                                                             <----    <<<<<<<<<ARR2        --------->WRKY45                                                       <----    <---------ATHB12     --------->WRKY38(1)                        <---------TOE2(3)        <-------  --------->WOX13(1)   <----------DOF2                              <---------TOE1(3)  <------ZmHOX2a(1) ----------GT1<---------YAB1                 ----------->HVH21 <---------YAB1    <---------At4g35610   ataacaatcaaaccttataatttagctttgactctgtatattcaaggctgacattgtctatatttatgctaaggtgttcttgatgctgaggagttgtgtc  16248800  Previous    Next  AGI:  At2g38880.1    Description:  ATHAP3/ATNF-YB1/HAP3/HAP3A (NUCLEAR FACTOR Y SUBUNIT B1); transcription factor. Identical to Nuclear transcription factor Y subunit B-1 (NFYB1) [Arabidopsis Thaliana] (GB:Q9SLG0;GB:O23633); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family [Arabidopsis thaliana] (TAIR:AT4G14540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69013.1); contains InterPro domain Transcription factor, NFYB/HAP3, conserved site; (InterPro:IPR003956); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Transcription factor, CBFA/NFYB, DNA top Range:  from: 16245554    to: 16247912    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g38890.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN75604.1) Range:  from: 16248312    to: 16249995    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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