Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ------->TEIL                                                                                --------->ANAC58                                                                                --------->ANAC58                                    <---------ARR14(2)                        ------>MYB83                                    --------->GLK1(2)                         ---------->DOF2                                    --------->ARR14(2)                        --------->MYB52(1)   --------------->AGL15  --------->ANAC58                                    ------>MYB46(1)  <-----------------AGL1  --------->ANAC58                                   --------->MYB55(1) -->ANAC58           --------->ANAC46                        --------->YAB1 <---------MYB59         < -->ANAC58 <-------TEIL --------->MYB52(1)         <-----------GT1 --------->YAB1------->GAMYB   ----   aatttcccaaaaatgcattaaacacagaacgaaatacaaatctggttcccaattcacaattgaacataatcaaaaaaacctaacgcacattcaaactccg  16227600                     --------->ZAT2                  --------->ANAC58          <---------------AGL15                      --------->ANAC58          --------------->AGL15                   --------->ZAT2                      <<<<<<<<<TAC1      <---------GLK1(2)                 --------->TOE2(3)                --------->GLK1(1) ---------ALFIN1--------->DAG2       --------->GLK1(1)                   <---------GLK1(1) <--------- ----->ANAC46  ---------->DOF2       <---------GLK1(1)             --------->CCA1(2)--------->ZAT6   agccactcgattctcaaaaaaggagctagggtttgagggatacctgaataccagcacgagaagagcgagagatggatttcttcttaacactgtctttgtt  16227700           <------NtERF2           --------->ATERF1(1)          <---------RAP2.6(3)          ------>NtERF2         <---------ANAC46         --------->DEAR3(1)                           <---------ARR11(3)        --------->ATERF1(1)                           --------->ARR14(2)    --------->ZAT2                                    <---------ARR14(2)    <---------At4g35610                              <---------CCA1(2)    --------->At4g35610                          ------>MYB46(1)    <---------ZAT2                               ------>MYB83   <-----------RAV1(1)                          --------->ANAC58 ----------->RAV1(2)             <----------DOF2--------->ANAC58 --------->ZAT2       <---------ZAT2            --------->ANAC46                  --------->ARR11(3) --------->At4g35610  --------->ZAT2           --------->MYB46(3)             ---------->DOF2 <---------At4g35610  --------->At4g35610 <----------DOF2           ------>MYB83  <---------ARR11(3) <---------ZAT2   --------->ANAC46    <---------ALFIN1<---------ARR11(1) ---------->DOF2 -DOF2 ------>NtERF2  <---------At4g35610<---------DAG2             ------>MYB46(1)                 <   tgcagctgctgccgtcgtcttcgcagctagaagccctttcccacctttaccagccatatctacagaaaccaaacaaaaagaaaagagcttcacaaaattt  16227800               <---------DEAR3(1)              <---------------------WRI1             <-----------HVH21           ------>ZmHOX2a(2)           <-------TEIL          <------ZmHOX2a(2)         <---------ARR11(3)         --------->ARR14(2)           --------->MYB52(1)         --------->AGP1               <-----------GT1                          ------>ZmHOX2a(2)         <---------ARR14(2)      <---------YAB1                               <------ZmHOX2a(2)         <---------GLK1(2)      <---------ARR11(3)                  ----------->GT1      <---------HSFB2a(2)       --------->ARR11(3)      ---------->DOF2      --------->ARR11(3)      --------->HSFB2a(2)---------->DOF2             --------->ANAC58        <---------AGP1 ---------GLK1(2)<------NtERF2----------->GT1        --------->ANAC58        <---------ARR11(3)   ---   cagaatttccagatccgtcgtcgaaatcaaagaagataattaaccgatagagaagaagcaaagaacagtagagaaataagatctcaagcttatggtgaag  16227900                 <---------ANAC46               --------->O2                <------NtERF2                   --------->TGA1a                ------>NtERF2                   <---------O2*TSS              --------------->AtSPL3              <---------DEAR3(1)       ===================bZIP_DOF--------->ZAT2  ------->TEIL         --------->ARR14(2)            ---------->DOF2  --------->AHL20(2)    --------------->AtSPL8 ---->TEIL   <---------LBD16      <----------ID1<---------TGA1a   <---------ZAT2  --------->MYB52(1)   aacctattcgaaattcgcggcgagaaaatcgatacagagacaaaagagagacgtcgaattaaaaccctagctcagagagggaagtacctgaaaacgagag  16228000                                                                                         <---------RAP2.6(3)                                                                                         ------>NtERF2                                                                                        <---------ATERF1(2)                                                                                        <---------DEAR3(1)                                                                                        <---------RAP2.6(2)                                                                                        --------->ATERF1(2)                                                                                        --------->RAP2.6(2)                                                        <---------GLK1(2)       <-----------RAV1(1)                               <---------TOE1(3)        --------->ARR14(2)    ------>ZmHOX2a(2)                          <----------DOF2             --------->LBD16       --------->ARR11(3)                       --------->ARR11(3)             <------NtERF2         <---------ARR11(3)                       <---------ARR11(3)           <---------LBD16         <---------AGP1<------NtERF2                  --------->LBD16           <---------YAB1                  --------->ARR14(2)                 <---------ANAC58          <------------CBF                 <---------ARR14(2)                 <---------ANAC58        --------->ICU4 <---------ARR14(2) <---------CCA1(2)<--------                <---------LBD16<---------TOE2(3)  --------->TCP20  --------->ARR11(3)  --------->ATERF1(1)           <------------CBF   ---------->DOF2<-----------RAV1(1)  <---------At4g35610--------->TCP20   cgggatgctcgaaaattgtgcgggagagcttttaaagtttggacttattgttgggccggattttgtttagctcttgtggatcttgttgggccggcttttc  16228100                                                    --------->ARR11(3)                           ----                                                    <---------ARR11(3)                          -----                                                   --------->GLK1(1)                            <----                                                   --------->RVE1(1)                            -----                                                   <---------CCA1(1)                           ------                                                   <---------GLK1(1)                           <-----                                                   <---------RVE1(1)                         --------                                         <---------AHL20(2)                                  <-------                                         --------->AHL20(2)                                 <--------                                       --------->AHL20(2)          XXXXXXXXXXXXXXXXXXXX>MIR869.1<----       --------->ICU4               <---------AHL20(2) <----------DOF2            <---------MYB46(3)     --------->YAB1             ----------->GT1    --------->CCA1(1)     --------->ARR11(3) <--------    <---------YAB1         <---------WRKY12       --------->ARR11(3)     <---------ARR14(2) ---------  ----------->GT1          <---------WRKY38(1)    <---------ARR11(3)    <---------CCA1(2)   --------- --DOF2<---------YAB1     --------->WRKY18(1)    <<<<<<<<<RAP2.2 <-------TEIL  <-----------RAV1(1)<--   taaattgttataattcttcattttttgggtcaacatgttaaatttatatttagatatctttacaaaattcgttcaaatcttgtgttgttggaaaataatt  16228200 <-----------GT1 ----->AHL20(1) ---->ATHB51 -----ICU4 ---->AHL20(2) --->ICU4 ----YAB1 ->YAB1                                        --------->ARR11(3) --ICU4                                        <---------ARR11(3)         --------->YAB1 -ATHB51                                       --------->ARR14(2)        <-------TEIL --------->YAB1 -----AHL20(2)         <---------AHL20(2)      <---------ARR14(2)    <---------ARR14(2)           --- -AHL20(2)            --------->AHL20(2)     ----------->ARR10       --------->ARR11(3)  <---------ICU4 >AHL20(2)         <---------ANAC55(2)  ---------->DOF2              <---------ARR11(3) <---------YAB1 >ICU4      --------->AHL20(2)   <---------ATHB51        --------->AHL20(2)    <---------ALFIN1   <-- -------YAB1<---------AHL20(2)   --------->AHL20(2)  ----------->GT1 --------->ARR14(2) --------->ICU4   attttactaaaaatttatatcacataaaattgcaaattattcaaaagaagatttgtagttaaaatatagtggatattcataccacctctcatgatggtat  16228300                  <---------GLK1(2)               --------->ANAC55(2)               <---------ANAC55(2)        --------->YAB1                           <---------AHL20(2)                                 <        <---------ICU4                           <---------YAB1                                     <       --------->ICU4                            --------->AHL20(2)                <-------TEIL    <x      --------->AHL20(1)                      <----------DOF2      --------->CCA1(2)               <x     --------->YAB1                           <---------DAG2      --------->ARR11(3)              <xx   --------->AHL20(2)     <----------DOF2  <-----------GT1        <---------ARR11(3)              <xx ------>AHL20(2)  <---------ARR14(2)    <---------YAB1    ---------->DOF2  --------->ALFIN1      <xxx -------AHL20(2)  --------->ARR14(2) <---------YAB1  --------->AHL20(2)  --------->ALFIN1        <xxx   ttaaaaaaaataatgaaacgtattctctctttcaaatttttgattatactttttattaaacaaagaaagatttaagtgtggatgatacatcactagtttt  16228400       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           ===============================HOX2a_HOX2a <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <---------ARR11(3)               <----- xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           --------->ARR11(3)             <------- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <-----------GT1                   --------- xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------AHL20(2)             ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxsmallRNA(le3)                    --------->AHL20(2)                --------->TOE2(3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------AHL20(2)         --------->AHL20(2) xxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------AHL20(2)               <---------AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(le3)   <-------TEIL--------->AHL20(2)              --------->AHL20(2)<----   tttttttttttttttttttttttttttgaaaaacgatacatcagtagtttaattttaaataaacgatctaaattcttgaaaaaaatttcctcaattttat  16228500  Previous    Next  AGI:  At2g38810.1    Description:  HTA8; DNA binding. Identical to Probable histone H2A variant 2 [Arabidopsis Thaliana] (GB:Q9SII0); similar to HTA11, DNA binding [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to unknown [Populus trichocarpa] (GB:ABK92943.1); similar to unknown [Populus trichocarpa] (GB:ABK95317.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119) Range:  from: 16226363    to: 16227960    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version