Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->LBD16                                                                                         ------>NtERF2                                                                                        <---------ALFIN1                                                                                   <---------ATERF1(1)                                                                                   --------->ABI4(1)                                                                                  --------->DEAR3(1)                                                                          ------>ZmHOX2a(1)<---------DAG2                                                                      <---------ALFIN1  --------->DEAR3(1)                                                                      --------->AtMYB61--------->ATERF1(1)                                                                   --------->DEAR3(1) <---------ATERF1(1)                                                                 ------>NtERF2    ------->GAMYB                                                                <---------ALFIN1  --------->DREB2C(2)                                                              --------->LBD16   --------->ABI4(1)                                                              <---------ATERF1(1)--------->DEAR4(2)                                                              ------>NtERF2    --------->AtMYB61                                                   <---------ANAC46<---------ALFIN1------>NtERF2                                         <----------DOF2     --------->DEAR3(1)<---------ALFIN1                                        <---------HSFC1(2)   --------->ANAC46  --------->DEAR3(1)                                        <---------HSFB2a(1)  --------->ANAC58 --------->MYB46(3)                                        --------->HSFB2a(1)  --------->ANAC58 <---------MYB55(2)                                        --------->HSFC1(2)  <---------LBD16 <---------ALFIN1   ------                                      <---------ARR11(3)   ------>ZmHOX2a(1)--------->ANAC46<--------        --------->YAB1          --------->YAB1  --------->DEAR3(1)--------->MYB46(3)  ------>NtERF2 ------->YAB1                --------->WOX13(1) --------->DREB2C(2)--------->AtMYB61 <---------ALFIN1 ----->ANAC58  --------->ANAC58<---------ATHB12--------->DEAR3(2)<---------ATERF1(1) --------->DEAR3(1) ----->ANAC58  --------->ANAC58--------->MYB46(3)--------->LBD16--------->DEAR3(1)<---------ALFIN1   agcatagaaagaataacaagaaccaaaactccaatcaccagaactttccaccggcgttttcctccgccaccacctcctccaccaccgcctccgcctttca  16172600                                                       --------->ANAC46                                                  <---------ARR14(2)   --------->LBD16                       ------->TEIL --------->LBD16    ------>ZmHOX2a(2)  --------------->AGL15            <---------ATHB12<------ZmHOX2a(2)    <------ZmHOX2a(2)  <---------------AGL15       <-----------------AGL1------>ZmHOX2a(2)  --------->ARR11(3) ----------------->AGL2    <----------DOF2        --------->ARR14(2)   <---------ARR11(3)          -- --->YAB1               --------->ARR11(3)--------->ANAC58            ------->GAMYB                <- --DOF2                 <---------ARR11(3)--------->ANAC58           --------->MYB46(3)        ------   tattcccgatttagaattgaatgaaatgtctttcccaattacgaacgcattggatccccaaaacgttgccaacgatctctctatcaatgtctctctctgt  16172700              --------->YAB1                                                  --------->ZAT18       --------->ANAC46                                                       --------->ZAT14       --------->ANAC58                      <---------ANAC46                 <---------ZAT14       --------->ANAC58                    <---------ZAT14                    <---------ZAT18 ------->HSFB2a(2)          --------->ARR14(2)                   --------->YAB1            <------ZmHOX2a(2) --------HSFB2a(2)          <---------ARR14(2) <-----------RAV1(1)        --------->ARR14(2)       <- --->ZAT14   <---------ATHB12              <-------GAMYB  --------->ZAT18 <---------ARR14(2)------>ZmHOX2a(2)   tctcgatacactcaaatcatactctcgtcgaattctctgtgtgtgtgttgtgttgcagaatgcacaagtataagtgtttctgcacttagcccgatcgcat  16172800                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   <-                        <---------ANAC46                                                           --                      --------------->AGL15                                           <----------DOF2               <---------DAG2                                                         ===============               <----------DOF2                                                  <---------ALFIN1   --              <---------ANAC58                                                  --------->ANAC46   ==              <---------ANAC58                                                --------->ANAC58     <-          <----------DOF2      <------ZmHOX2a(1)     *TSS<-------TEIL         --------->ANAC46     <-   <----------DOF2    <---------------AGL15    <-------TEIL                   <---------ALFIN1     -- --------CCA1(2)   <-----------GT1            --------->CCA1(2)  <-------TEIL --------->ANAC58   <---   cgtctctttcccctttgctttttgctacttggaggaagagagagagagatacacacacatacacacatacacacacacacacacacctctttttttttca  16172900                                                                       <----------DOF2                                                                  <-------MYC3                                                                  <-------MYC4                                                                  ------->MYC4                                                                  -------->ABF1 --------->ALFIN1                                                 ------->MYC3 -------MYC4                                                      <-------MYC2 ------>MYC4                                --------->ARR14(2)    ------->MYC2 ------>MYC2                                <---------ARR11(3)   <---------ANAC55(2) -------MYC2                                --------->ARR11(3)   =================bZIP_DOF -------MYC3    ------>NtERF2 <-----------GT1<------ZmHOX2a(2)   <---------O2 ------>MYC3    --------->LBD16    ------>MYB46(1)               --------->ANAC55(2) --------ANAC55(2)       --------->AHL20(2) <-----------ARR10    --------->TGA1a ------->TGA1a --------->ANAC46    ------>MYB83          <------ZmHOX2a(2) ========bZIP_DOF       <---------YAB1      --------->AGP1       --------->O2        ----------->GT1 ------->O2    --------->DEAR3(1)==========================================MYC_MYB   <---------MYB46(3) ========================================MYC_MYB        <---------ARR11(3)          --------->ALFIN1 --------O2   --------->ATERF1(1)------->GAMYB------>ZmHOX2a(2)  <---------TGA1a    <---------AtMYB61 --------TGA1a<---------LBD16<-----------GT1<---------AGP1--------->YAB1            <---------DEAR3(1) ------->ANAC55(2)  <---------MYB52(1)      <---------ARR14(2)   =================bZIP_DOF    <------ ---------OsbHLH66<---------ANAC46<---------ALFIN1      --------->ARR11(3)     <---------ALFIN1   <--   cacgtgtggctatgtctccgccgtttattatttaacccacttgcaagatctatctccagatcataacacgtgtcttttctcacacggtggtgaattcttt  16173000              <---------ICU4                                                         ----------->HVH21              --------->YAB1                                                         --------->WRKY12           --------->WOX13(1)                                                   ------->GAMYB <------ <----------DOF2 <---------ICU4                                                --------->ANAC46 <---------------AGL15                                  <---------MYB52(1)     --------->ANAC58 --------------->AGL15      <------------CBF           --------->LBD16         --------->ANAC58     < <---------DAG2 <---------YAB1      *TSS       ------>ZmHOX2a(1)          <-----------GT1     <------ ------------------ANAC81 <---------AHL20(2)  --------->TOE2(3)      <---------CCA1(1)   xxxxxxxxxxxx ---------GT1<---------ATHB12  <-----------HVH21     <---------LBD16 <---------RVE1(1)>>>>>>>>>WRKY18   ttactttttttgttaatcatcatcgttttatattgtcactcgttgaatcctaaactccggtatgcctagcgatatttttcaacgccattgacgacgcttt  16173100       ----------->GT1              <-----------GT1 <<<<<<<<<<<<<<<<<LFY           ------>ZmHOX2a(1) >>>>>>>>>>>>>>>>>LFY        <-----------GT1                                    <---------At4g35610 ---DAG2                     ---------->ID1                             <---------YAB1            --- -----------GT1         <---------MYB52(1)--------->GLK1(1)--------->GLK1(1)    --------->At4g35610 ----DOF2           ------>ZmHOX2a(1)<-----------GT1    <---------TOE2(3)  ------->TEIL<---------ZAT14 xxxxxxxxxxxxx>smallRNA(si3)<-----------GT1      <----------DOF2      --------->YAB1<---------ANAC46   atataccactggtaaatctctcctctgttttttcctattttccgatttcttctttgttaagaattctatgtatgatgaatttagctgagtgaagaagatg  16173200                                          <-----------GT1                                      --------->TOE2(3)                                      <----------DOF2                     --------->YAB1<---------ARR11(3)                    <---------YAB1 --------->ARR11(3)        <---------ANAC46          --------->GLK1(1)   <-------TEIL                        ------->TEIL    <---------At4g35610      --------->At4g35610  <---------TOE2(3)           <---------At5g28300<---    --------->At4g35610      ----------->GT1      --------->MYB59            <-----------GT1   <----- ---->TEIL  ---------->DOF2 <XXXXXXXXXXXXXXXXXXXXMIR1886.3  <-----------RAV1(1)          --------->ANAC46   aattttagctgagtgaaagcttatgatagtctggtgaaatctttaatccatttaggttcaatctggtgcaagtttgtttttactgtattatgcgcctctt  16173300                                                 <---------TOE1(3)                                                 <---------TOE2(3)                                                 <---------YAB1                    <---------GLK1(2)                                              <---------ATHB51                   <---------TOE1(2)       <---------ANAC58                  <------ZmHOX2a(2)                       <---------TOE1(3)       <---------ANAC58                <------ZmHOX2a(1)                         <---------TOE2(3)       <---------ANAC46        --------->At4g35610                    ----------->HVH21             < ------AHL20(2)                <---------At4g35610                  <---------At4g35610           --- -----DOF2        --------->ICU4   ---------->DOF2       <---------YAB1  <---------bZIP60(2)      ---   tatttgtttgtgtggatgtaatgaagagtatggagctaaaaggatcaaattatggttttattctagcttaggctgacctgtctaaggttctcttgtctgg  16173400                                                                                    ---------->DOF2                                                                                   <------ZmHOX2a(1)                                                                               <---------ANAC46                                                                             ------>ZmHOX2a(2)                                                                             =============HOX2a_HOX2a                             <----------DOF2                              <---------ICU4            <                            <---------ANAC58                              --------->ATHB12         <-    <----------DOF2         <---------ANAC58                              -------->HAHB4         <---  ------->TEIL  <---------DAG2                                            --------->YAB1         ---- ---------ZAT14 <----------DOF2--------->ATHB12                          --------->ICU4         ----- ------------>AtSPL8  <---------ANAC58              <----------DOF2      <---------YAB1         <---- ------------>AtSPL3  <---------ANAC58     ----------->HVH21            <---------TOE2(3)<----------DOF2   tctgtacttttacattgacttttttcttgtgcttgatttgaatcagtgactgttcttttagttttgagtatgttaatgatcgcgaggaaagctttggcct  16173500  Previous    Next  AGI:  At2g38650.1    Description:  GAUT7/LGT7 (GALACTURONOSYLTRANSFERASE 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups. similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABN08312.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) Range:  from: 16168886    to: 16172853    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g38660.1    Description:  tetrahydrofolate dehydrogenase/cyclohydrolase, putative. similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65246.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672) Range:  from: 16173036    to: 16175463    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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