Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <-----------ARR10                                             --------->GLK1(2)                                             <---------ARR14(2)                                    --------->ANAC46                                 --------->ZAT14                                 <---------ZAT14           <---------ZAT18                           <----------DOF2   --------->ARR14(2)         --------->TOE1(2)                        ---------->ID1      <---------GLK1(2)     --------->TOE2(3)                   <----------DOF2<---------ALFIN1  <------ZmHOX2a(1)   --------->TOE2(2)      <---------ICU4   <-----------GT1----------->HVH21    --------->ZAT18                 ------>ZmHOX2a(1)   gttgttcatcagtattgaaggcttttctccttttctacactcgacagaatctgaggacaagggcacaaacttaacatacgaaggaacatcgtcctcaatt  16101700                                                --------->GLK1(2)               <-----------GT1             ----------->GT1      <XXXXXXXXXXXXXXXXXXXXMIR834            --------->ANAC58          --------->LBD16           --------->ZAT6            --------->ANAC58          ------>ZmHOX2a(1)       <-----------GT1                 <------            --------->ANAC46        ----------->RAV1(2)  <---------ANAC46                    --------         ------>MYB46(1)            ============================RAV                       <---------TOE1(3)         -------->P                 <---------LBD16      <---------ANAC58                 <---------TOE2(3)         ------>MYB83            <---------HSFB2a(1)     <---------ANAC58               <<<<<<<<<WRKY18        ----------->RAV1(1)      --------->HSFB2a(1)<-----------RAV1(1)            ---------->DOF2      --------->MYB46(3)       <---------GLK1(2)--------->ARR11(3)       <---------ZAT6--------->WRKY18(1)   ccatttgaaccaacaagaaaccatttggaaatggaatctcctgaatagataatcttgttgcgtttaacactgctagtgctactcttaaagtcaaggttct  16101800                                                 --------->TOE1(2)                                                ------>ZmHOX2a(2)                                                --------->HSFB2a(1)                                                --------->HSFC1(2)                                                <---------HSFC1(2)                                   <------MYB83 <---------HSFB2a(1)                                 <--------P    <------ZmHOX2a(2)                           <-----------RAV1(2)--------->ARR14(2)                      --------->HSFB2a(2)     <---------ARR14(2)                   <---------ARR14(2)       <---------DEAR3(2)                               --------                   --------->GLK1(2)       --------->ETT(1)                    --------->ANAC46                   --------->ARR14(2) <----------DOF2               <---------ANAC46         -------- -TEIL ----------->GT1<---------HSFB2a(2)<-----------HVH21       <-----------RAV1(1)        ========= ->ARR14(2)       <---------GLK1(2)<------MYB46(1)------>ZmHOX2a(1)--------->ALFIN1         ---------   tcttgaattttgtaacaagagaatctggaacaggggtaggctttgtcggatccttcgaatgcctcttatgtggtggaatataagacatgtctaaacctga  16101900                                                           <---------At4g35610                ------->GAMYB                              --------->At4g35610               --------->MYB46(3)              --------->TOE2(3)       ----------->RAV1(1)                   --------->ARR11(3)             <----------DOF2 ->TOE1(3)    -------->P                     <---------ARR11(3)            <---------ANAC58 ->TOE2(3)--------->TOE2(3)                 --------->CCA1(1)              <---------ANAC58 ==================RAV                      --------->RVE1(1)         <---------ICU4        >>>>>>>>>TBF1 -->RAV1(2)  --------->WOX13(1)           --------->AHL20(2)       --------->YAB1   ------->GAMYB   -   aactcacaacaacatcaaccaaaaacgatttcaagataaaacaaaaaaatctcaaacttggagctcaaataagaattgctttacaacgagcgaagaagaa  16102000                                                                                     <---------ZAT14                <---------TOE1(3)                                                    --------->ZAT14            <----------DOF2                          --------->ZAT14                ------>ZmHOX2a(1)        <---------GLK1(2)              --------->YAB1<---------ZAT14      --------->AHL20(2)        - --------->DOF2 <---------TOE2(3)     <---------ATHB12                  <----------DOF2        ------   tataaagacagaaactttaaggtgagaagagagaagtcgaatcatacctgtaggctgtagtcgaaactcaacgtcttttaatattcctgcagagaagtaa  16102100                                              --------->ZAT6                                        --------->WOX13(1)               --------->AHL20(2)         *TSS                         ------------>CBF                   <---------AHL20(2)     --------->ANAC58           <-----------GT1                        <----------DOF2   <------MYB46(1)     --------->ANAC58          <---------AHL20(2)       <---------MYB52(1)               <------MYB83 ---------->HVH21          <---------DAG2   <-----------GT1      <---------ICU4     <---------YAB1 --->MYB52(1)              <----------DOF2 --------->AHL20(2)    --------->YAB1 <------------CBF   cagtgacactcaaatagactcttcgctccctttttaatctttcaattaactctcatccgtttctcaaaaatgactttaattagattgtgtttggtttcga  16102200                                                      <------MYB46(1)                                                      <------MYB83                   --------->TOE2(3)                 <---------AtMYB61                   --------->TOE1(3)                 --------->MYB59           <----------ID1                   --------->LBD16        <------------CBF                   --------->HSFB2a(2)      <---------YAB1                       <---------HSFB2a(2)                          <---------AtMYB61     ------------>CBF  --------->ANAC58 --------->ARR14(2)                   <----------ID1   <------ZmHOX2a(2)   --------->ANAC58 <---------ARR14(2)             <---------AHL20(2)   tagggatcacaattggacaaacctcaagcctgaaactatcaggttcccgaggggtttggtcttaaatgcaggttttattgcaacaaggttttggttttgt  16102300                       --------->AHL20(2)                  ------------>CBF                 <-----------GT1              ----------->GT1                                                              <---------TOE2(3)             --------->DAG2                                                     <----------DOF2            ---------->DOF2  --------->ANAC55(2)                     --------->TOE2(3)<---------ANAC46       --------->ZAT6  <---------AHL20(2)               ---------->DOF2   ---------->DOF2  <---------TOE1(3)   aagaatttttcactaaaagtaacaattttttaagtatttctggctatcgaaaaatagaaaaagaaatgttttcttaaaaagtcttttagcgttgaggttc  16102400                                               <<<<<<<<<GATA-3                                               <<<<<<<<<GATA-2                                               <<<<<<<<<GATA-4                                       <---------RAP2.6(3)                                       ------>NtERF2                                      --------->DEAR3(1)                                      --------->RAP2.3(3)                                     --------->RAP2.3(1)                               <-----------TGA1                                     --------->ORA47(2)                                <-----------HVH21                                    --------->LBD16                                   <---------TGA2(1)                                   --------->ANAC46                                   --------->TGA2(1)                                  --------->MYB46(3)                                  <---------bZIP60(1)                                --------->ARR14(2)                                    --------->bZIP60(1)                               <---------CCA1(2)        <---------HSFB2a(1)        <---------bZIP60(1)                          ------>MYB46(1)      <<<<<<<<<GATA-1                     --------->bZIP60(1)                          -------->P------>NtERF2     ---------->DOF2     <---------ZAT2   <---------ANAC55(2)                          ------>MYB83--------->RAP2.3(2)                 --------->At4g35610       <       *TSS      <----------DOF2<---------ARR14(2) --------->ANAC46       <---------At4g35610<------- <---------GLK1(2)       <---------ALFIN1     --------->ARR14(2)          --------->ZAT2   --------->ANAC55(2)   tcagactctctctctctctctttgcccctacctatatccgccgtcttgaatccacagaaagtccgttttagtttccagctaagtgatgtcgtcacatatc  16102500         <-----------HVH21        <---------DEAR3(2)        <------MYB83        <------MYB46(1)       <---------DEAR3(1)       <---------MYB46(3)      <---------ORA47(1)                                                                          <--    --------->MYB55(2)                                                                            <--    <---------MYB46(3)                                        <---------ARR11(3)                  ---   <---------AtMYB61                                          --------->ARR11(3)                  --- -----------RAV1(1)                  <----------DOF2      ---------->DOF2                     ------- --CCA1(2)                        --------->GLK1(2)  <----------DOF2  <----------DOF2---------->DOF2   taatggtggtcggtcactacttaaatgaagacagagaagcttttctagtcttcttctttctaaagttcttacctttagaatttgaacaaaagtatcagcg  16102600  Previous    Next  AGI:  At2g38430.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54310.1); similar to unknown [Populus trichocarpa] (GB:ABK94232.1) Range:  from: 16100017    to: 16102109    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g38440.1    Description:  ITB1 (IRREGULAR TRICHOME BRANCH1). Identical to Protein SCAR2 (SCAR2) [Arabidopsis Thaliana] (GB:Q5XPJ9;GB:O80907); similar to WAVE3 [Arabidopsis thaliana] (TAIR:AT5G01730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83781.1); contains InterPro domain Actin-binding WH2 (InterPro:IPR003124) Range:  from: 16102407    to: 16108299    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version