Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ZAT18                                                             <---------ZAT18                                   --------->AHL20(2)        <---------ZAT14                                   <---------ICU4 --------->TOE2(3)                                  <---------AHL20(2)         --------->ZAT14                                  --------->AHL20(2)    --------->CCA1(2)                     -------                                --------->YAB1    <----------DOF2                         <---------AHL20(2)                  ---------->DOF2<---------AHL20(1)   <<<<<<<<<RAP2.2                    --------->AHL20(2)          ---------->DOF2----------->GT1       <-----------GT1                       --------------->AGL15     --------->YAB1   <------ZmHOX2a(1)     --------->YAB1 --------------->AtSPL8 <-----------GT1   tatactattagaaaaagatgaaaaggatagtttaaaataatttctcttataactttagatatgtgtactctatttgatatcatataaccaattttataaa  16097800                                                                 --------->ARR11(3)                                                                 --------->AHL20(1)                                      ------->TEIL       <----------DOF2                                    <-------TEIL         <---------DAG2                             <---------AHL20(2)   --------->ARR11(3)                           --------->AHL20(2)     <---------ARR11(3) --->DOF2             <---------TOE2(3)       ---------->DOF2    <---------AHL20(1)   gacttaaatttgtgtattttagttaacattttaaaatgtgcatctttgtaaagctcttactttttgatatattgttccaactcttgtaagttaatctcac  16097900                                             --------->ARR11(3)                                             <---------ARR11(1)                                     =================================HOX2a_HOX2a                                     ------>ZmHOX2a(1)             <---------ICU4                               <-----------ARR10                  <---------YAB1                               --------->GLK1(2)                --------->YAB1                               --------->ARR14(2)              <------ZmHOX2a(2)          <---------AHL20(2)                          ---------->DOF2   <---------CCA1(2) <---------ARR11(3)<---------DAG2             <---------LBD16  <---------GLK1(2)               --------->ARR11(3)<----------DOF2   tggtttcatagatttcgagggaagcctagaaagaatctcctctatcaaatctttggaagattgagatcatcatcgttcaaaactttttttttttaattct  16098000                            <---------TGA1a                            --------->ANAC55(1)                            --------->TGA1a                            --------->ANAC58                            --------->ANAC55(2)                            <---------ANAC55(2)                <---------ANAC46                      --------->TOE2(3)         --------->ALFIN1   <---------O2              --------->TOE1(3)         ----------->HVH21  --------->O2   --------->CCA1(2)    --------->At4g35610        --------->At5g28300 --------->ANAC46 <---------ANAC55(2)<---------ZAT2    <----------DOF2       <---------ANAC46<---------REM1(2)  <---------ARR14(2)    --------->ZAT2<---------ZAT18      <---------DEAR3(1)    --------->ANAC58<-------TEIL        <---------At4g35610     <---------ZAT14 <---------ARR14(2)   <---------ARR11(3)    ----------->RAV1(2)     ------->TEIL     <---------LBD16 --------->ARR14(2)   --------->ARR14(2)   ------->TEIL   --------->ZAT18       <   gtatttctgcggtgaagggagtgtatacacacgtaacaatagaagatacataaaaaccctaaatgaagctgggccagtagtgggcttttgaatctagttg  16098100                                                                                          --------->ANAC58                                                                                   *TSS   <------NtERF2                                                                                 <-----------HVH21                                                                                 <-----------TGA1                               <---------ARR14(2)                            ------>ZmHOX2a(2)                               --------->ARR14(2)                           <------ZmHOX2a(2)                            ------>ZmHOX2a(2)                              --------->ARR14(2)                           <------ZmHOX2a(2)                               --------->ARR14(3)                          --------->ARR11(3)                               <---------ARR11(3)                          <---------ARR11(3)                               --------->AGP1------>NtERF2                    >>>>>>>>>>DREB2A                                       <---------ARR14(2)                    >>>>>>>>>>DREB1A                                       <---------ARR14(3)                   <----------ID1 ----------->HVH21                        --------->ARR11(3)                   <---------ETT(1)                                      ----------->ARR10--------->ANAC58 ----------DOF2   --------->DEAR3(2) <---------bZIP60(2)  <------------CBF <-----------ARR10   ggcttttacagatgttatataccgacaagatcgtatatgacatgtcttccagttttatcgaattgaagaaatggcaagatcttcgtcatggcaccgaatg  16098200                                                                     --------->YAB1                                                 ------>MYB46(1)   --------->ANAC58             -----                                                 ------>MYB83--------->GLK1(2)                  -----                  ----------->GT1     <----------DOF2       <---------GLK1(2)     --------->AtLEC2  -           ---------->DOF2   ------>ZmHOX2a(1)   --------->MYB52(1)--------->ANAC58             -----   tcaaatttcatgagaaagtatcgaaaaattcctcattcgtctttcaaaaccaaatggaacgagaatctcaagcagaagtatgccatggaagagctaagaa  16098300                                                                                  ------>ZmHOX2a(1)                                                                              --------->ANAC46                                                                              <---------ALFIN1 <---------HSFC1(2)                                                         <---------ALFIN1 --------->HSFB2a(1)                                                       <---------ZAT18 --------->HSFC1(2)                    --------->HSFB2a(1)                 --------->ZAT18 <---------HSFB2a(1)                  --------->ARR14(2)                 <---------At4g35610       <- ---->ANAC46  <-------TEIL            ------->TEIL                       --------->At4g35610    <---- ---->ANAC58--------->ARR14(2)        <---------ARR14(2)                 --------->PCF2       <------ ------->P  <---------GLK1(2)     --------------->AtSPL8         --------->MYB52(1)           ------- ---->ANAC58<---------ARR14(2)<---------MYB52(1)<---------At4g35610  <-----------HVH21        <------   gcaaccttctcacagattcagagaatgcttctgttatgcgaaccctcttaagctcattccaactccataactgtgagcccactcctcaagcttacagatt  16098400                                   --------->GLK1(2)   --------->YAB1          --------->At4g35610  <---------YAB1           <---------At4g35610 --------MYB52(1)          --------->ZAT2                                                   --------- ---TEIL                   <---------ZAT2              <---------ALFIN1              --------->At4g35610 ---ARR14(2)          ------>ZmHOX2a(1)             <-----------GT1                  <---------At4g35610 -->ARR14(2)      --------->ARR14(2)              <----------DOF2                    ----------->RAV1(2) ---GLK1(2)       <---------ARR14(2)       <---------At4g35610                     <---------ALFIN1   cgttatcaaaaccctagctaaatcctctcagcttgagaatatttcatctgttctttaccaccttgaagtctctgagaagttcgatacacctgaatccatt  16098500                                                                                   <---------ANAC58                                                                                   <---------ANAC58                               <---------MYB52(1)                                  <---------ANAC46                              --------->LBD16                                     <-------TEIL                            <---------LBD16                                      --------->ALFIN1   -                        <----------DOF2                                        --------->At4g35610  -                       <---------ANAC58                                        <---------ZAT2--------                <---------ANAC46                    <---------TOE1(3)          <---------At4g35610  -      <-----------HVH21<---------ANAC58             <---------TOE2(3)        <-----------RAV1(2) <--- -------->AGL3 <---------At4g35610              <-------GAMYB        --------->TOE2(3)       <-------   ttcagagatgtcatcgctgcttatggcttctccggtagaatcgaagaggcgattgaggttttcttcaaaatccctaatttcaggtgcgtgccttctgctt  16098600                                                                       ---------->DOF2          <----------DOF2                                      --------->GLK1(2)             <------MYB46(1) -------->ANAC58                                              <---------ARR11(3)         <-------GAMYB -------->ANAC46                                              --------->ARR11(3)      <---------ANAC58 ->At4g35610                     ---------->DOF2            ----------->ARR10         <---------ANAC58 -------->ANAC58       <---------ANAC58                   --------->LBD16      --------->HSFB2a(2) ------REM1(2)         <---------ANAC58                  --------->TOE1(2) <---------ANAC58  <------MYB83 --At4g35610         --------->ARR11(3)  <---------GLK1(2)------>ZmHOX2a(1)<---------ANAC58 ---------   acacgctcaatgctttgctcttagttcttgtgagaaaaagacagagtcttgaattggttcctgagattttggtgaaagcttgtagaatgggtgttaggtt  16098700  Previous    Next  AGI:  At2g38420.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48821.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16098183    to: 16099628    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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