Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->LBD16                             --------->ANAC58                ---------->DOF2                             --------->ANAC58               <---------AHL20(2)                           --------->GLK1(1)          --------->ANAC55(1)                           <            <---------AHL20(2)                        <---------ANAC55(2)                    --------            --------->AHL20(2)                        --------->ANAC46                      <--------        --------->AHL20(2) <---------GLK1(1)          --------->ANAC58                     --------->AHL20(1)  <---------ANAC55(2)      --------->CCA1(2)          --------->ANAC55(2)                  <---------AHL20(1)  --------->ANAC55(2)     <---------ARR14(2)          --------->ANAC58                     <---------AHL20(2) <-------TEIL            <------ZmHOX2a(1)         <---------ARR14(2)                      --------->AHL20(2) ---->AHL20(2)     <---------YAB1                  --------->ARR14(2)                     --------->YAB1 -----AHL20(2)   --------->YAB1     <---------ANAC46 <-------TEIL <---------LBD16        <---------AHL20(2) >GT1   <---------AHL20(2)--------->ARR14(2)   <-------TEIL --------->AHL20(2)           <---------YAB1   aaatacatatttatttaaatcacaataggatatgcaatgtgtgtatatatacatatacgtaattaaagtccgggttaaactgatagcatatattataata  16068600        --------->YAB1        --------->ATHB51                          <---------At4g35610              --------->At4g35610  ------->TEIL                     --------->ANAC55(2)                           <-----------RAV1(2) -------TEIL                       <---------ANAC55(2) --------->TOE2(3)        <------NtERF2 ->YAB1<---------AHL20(2)       <---------YAB1  <-----------GT1          ---------->DOF2       ------ -YAB1 <---------YAB1  ---------->DOF2------->TEIL--------->At4g35610  --------->YAB1  >>>>>>>>>TBF1   gatgcatctataattgttcgtcaacaaaagcattatcatgtattttgaattaagcttccttcatttctgtgaatcaaaaggcctcagaagaagaaactaa  16068700                      ---------->DOF2                                                          ------                     <---------ATHB12                                                         <------                     --------->AHL20(2)                                                      --------                 ------>ZmHOX2a(2)                                                          <--------                <------ZmHOX2a(2)                                                          --------->ICU4               <---------ARR14(2)                                                       <-------TEIL               --------->ARR14(2)                                                   <---------ICU4         --------->MYB52(1)                                                     --------->AHL20(2)        <---------WRKY38(1)                                                     <---------AHL20(2)       <---------ATHB12                                                        --------->AHL20(1)      --------->ANAC58--------->AHL20(2)                           --------->DAG2   <---------AHL20(2)      --------->ANAC58<---------AHL20(2)                          ---------->DOF2  --------->AHL20(2)     --------->WOX13(1)                                    --------->ANAC46    --------->AHL20(2) ---->DOF2  ------->GAMYB     ----------->RAV1(2)          --------->ZAT6      <---------AHL20(2)   agtcaaacaatcaacgggatccaataaatcacatctggactatatagtatcaatactttccacactaaaaaagctaagaaatttaataaatacattatta  16068800                                                                                      <---------ANAC55(2)                                                                                      <---------bZIP60(2)                                                                                      <---------TGA1a                                                                                      <---------O2                                                                                      --------->O2                                                                                      <---------ANAC55(1)                                                                                      --------->TGA1a                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                      --------->ANAC55(2)                                         --------->AHL20(2)                           <---------ANAC58                                       --------->ANAC58                              ----------->STF1                                       --------->ANAC58                             <---------TGA2(2)   ----------->GT1                --------->MYB59                                  ----------->TGA1  ----------->GT1            <---------AHL20(2)                                    ----------->HVH21 --->YAB1                   <---------AHL20(1)                 <-----------GT1   <---------At4g35610 ---YAB1            <---------At4g35610----------->GT1    <---------ICU4         --------->At4g35610 ->AHL20(2)--------->DAG2   --------->AHL20(1)            --------->ATHB51     <------ZmHOX2a(1) -ICU4   ---------->DOF2 --------->CCA1(2)           --------->ICU4    <---------TOE2(3)       ------   taggggggaaaaaaaggtagtcatcagatatatattttggtaagaaaatatagaaatgaataatttcacgtttaacgaagaggagatgacgtgtgttcct  16068900                               <---------DAG2                   <---------------AGL15                                                          <--                   --------------->AGL15           <---------ALFIN1                            <-----     --------->LBD16 --------->AHL20(2)           ------>ZmHOX2a(1)                           <------ --->TOE1(2)      <-----------------AGL3   ------>ZmHOX2a(1) <----------DOF2         --------->YAB1   tcgaacccgagttttgttcgtctataaatagcaccttctcttctccttcttcctcacttccatctttttagcttcactatctctctataatcggttttat  16069000                                                     <------ZmHOX2a(1) <---------ICU4                                                    xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                  <---------LBD16      --------->YAB1                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  <-----------RAV1(2) --------->ICU4                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                xxxxxxxxxxxxxxxx>smallRNA(s)                        x                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 x                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                xxx                                                xxxxxxxxxxxxxxxx>smallRNA(i)                      xxx                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxx                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                xxx                     <----------ID1          xxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxx               ------->GAMYB                 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-------TEIL       xxx             --------->ANAC58         --------->GLK1(2)               <---------YAB1             xxxx      --------->ANAC46                <---------ARR14(2)            <---------ICU4              ----- --------DOF2--------->ANAC58         --------->ARR14(2)            --------->YAB1<---------MYB52(1)x ------GT1 --------->MYB46(3)   *TSS <---------GLK1(2)xxxxxxxxxxxxxxx>smallRNA(fl3)        <---------AHL20(2) -----GT1<-----------GT1 ---------->DOF2    ---------->DOF2        --------->ICU4 --------->DOF5.7(2)   ctttctctaagtcacaacccaaaaaaacaaagtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatctattttttgg  16069100                --------->ATHB12               <---------YAB1         --------->LBD16         ------>ZmHOX2a(1)       ----------->RAV1(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx>smallRNA(i)                      <------NtERF2        <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          <----------ID1     ---------->DOF2           <---------At5g28300 ----->ID1     <-------TEIL              ---------->DOF2 --------->ANAC58               <-----------GT1 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->YAB1     --------->ANAC58   --------->GLK1(2)   cgctatccatcctgagtttcattggctcttcttactacaatgaaaaaggccgaggcaaaacgcctaaaatcacttgagaatcaattctttttactgtcca  16069200                      <---------ANAC46                                                             <-                  ------->MYC3                                                                     <-                  <-------MYC3                                                                     --           --------->YAB1            <----------DOF2                                              <--        <----------DOF2     <-----------GT1                 --------->YAB1           ---------->DOF2<   tttaagctatcttttataaacgtgtcttattttctatctcttttgtttaaactaagaaactatagtattttgtctaaaacaaaacatgaaagaacagatt  16069300                                                                                  <---------YAB1                                                                                --------->YAB1                                             <--------P                         <--------HAHB4                                        <---------MYB52(1)                     --------->ICU4                                       <-----------HVH21                       <---------YAB1                                     --------->DEAR3(2)                        <---------ATHB51                                     --------->MYB46(3)                      ========================                                     <------NtERF2                           <---------------AGL15                                   <---------ALFIN1                         <---------YAB1                                   --------->DEAR3(1)                 --------->AHL20(1)                                  <---------MYB55(2)                  <---------AHL20(2)                                  --------->MYB46(3)                  --------->AHL20(2)         ----                                 <---------At4g35610                  <---------AHL20(1)         ----                             <-----------HVH21        --------->At4g35610 <-----------GT1       <----       <----------DOF2    <---------ZAT14   <---------MYB52(1)    --------->AHL20(2)   <---------ZAT18 ------>ZmHOX2a(2)        --------->ABI4(2)----------->GT1    --------->AHL20(2)-------->ATHB1  <---- --------AGP1             <---------ZAT18 <---------MYB46(3)  --------->AHL20(1)<---------ICU4 <----- --------ARR11(3)         --------->ZAT14<---------ANAC46     <---------AHL20(2)--------->ATHB12<---- ------->ARR11(3)      --------->LBD16--------->DEAR3(1)      <---------AHL20(1)--------->ATHB51===== -------CCA1(2) <----------DOF2  --------->At4g35610  <---------At4g35610 --------->YAB1   <---------YAB1 ------ZmHOX2a(2)    <---------LBD16------>NtERF2  <-------TEIL   <---------AHL20(2)  <---------ZAT6<   agatctcatctttagtctctttctccggtgcagtcagccaccgtcgggtaagtttcatctgtattttattaattaattacaattattagtgttcttatta  16069400                                                           --------->DAG2                           <---------DEAR3(2)            ---------->DOF2    ----------->GT1       <---------DREB2C(2)    --------->YAB1          <---------ATHB12 =====================================================================MADS_MADS ------------->AG        --------->DDF1          <---------ICU4        --------->WOX13(1) ------------->AGL1    <-----------RAV1(1)       -------->ATHB1    --------->ANAC58 -------------AG<---------AHL20(2)              <---------ATHB51   --------->ANAC46 -------------AGL1  --------->AHL20(2)          --------->ICU4     --------->ANAC58 ------GT1   ----------->GT1                    <---------ATHB12 <---------DOF5.7(2) -----At5g28300 --------->AHL20(2)<---------ATHB12    <---------------AGL15----------->GT1          < =====================================================================MADS_MADS   <-----------GT1  -- ---------MYB52(1)  <---------AHL20(2)        --------->WOX13(1)<---------WRKY38(1)             -----   ccgttttggtaaaattagttaattaatgtcggtccaaacattctaaaccaattattctgaaaagggtgaacgccaatcagttatatacaatattcttaca  16069500  Previous    Next  AGI:  At2g38325.1    Description:  MIR390A; miRNA Range:  from: 16069032    to: 16069138    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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