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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
<-----------
GT1
<------
ZmHOX2a(2)
<---------
ANAC58
---------
AGP1
<---------
ANAC58
<<<<<<<<<
TBF1
---------
ARR11(3)
---------->
ID1
<---------
ZAT14
<------------
-------->
ARR11(3)
--------->
TOE2(3)
--------->
ZAT14
<---------
MYB59
<<<<<<<<<
TBF1
--------
CCA1(2)
--------->
TOE1(3)
<---------
ZAT18
--------->
TOE2(3)
<<<<<<<<<
TBF1
-----
DOF2
<---------
MYB59
<-----------
RAV1(1)
<---------
ANAC46
<-----------
GT1
------
tagatctcacataaggcctaaccttagtcttcttgtcgctctcttccactgtactattgcttgaaaccttactctcttcaccttcttcttcttcttcctc
16052700
<-----------
GT1
<---------
YAB1
--------->
ATHB51
<---------
ICU4
<--------
HAHB4
------>
NtERF2
--------->
ICU4
<---------
ALFIN1
<---------
YAB1
--------->
DEAR3(1)
<--------
HAHB4
------>
ZmHOX2a(1)
--------->
ATERF1(1)
-------->
ATHB1
------>
ZmHOX2a(1)
<---------
ATERF1(1)
<---------
ICU4
-----
<---------
ALFIN1
------>
NtERF2
--------->
YAB1
------
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
ATHB12
--------->
At4g35610
------------
ANAC81
<---------
LBD16
--------->
ICU4
<---------
At4g35610
>
ZmHOX2a(1)
<---------
MYB52(1)
<-----------------
AGL3
<-----------
GT1
----------
ttcctcctcctcttcttctctgttagtcttcccgcctccctccatacttggaatcat
tattacttctgatgttacaaattcagaagaaatatagaaagaa
16052800
--------->
CCA1(2)
<<<<<<<<<<
MYB80
<---------
ARR14(2)
<---------
MYB52(1)
<---------
DOF5.7(2)
--------->
ARR14(2)
------>
ZmHOX2a(1)
---------->
DOF2
<---------
WRKY12
--------->
CCA1(2)
<----------
DOF2
--------->
CCA1(2)
---->
DAG2
<---------
ARR11(3)
--------->
WOX13(1)
---------->
DOF2
---
---->
DOF2
>>>>>>>
ZML2
--------->
ARR11(3)
==============
HOX2a_HOX2a
----------->
GT1
>
DOF2
--------->
ARR11(3)
<---------
TOE2(3)
<------
ZmHOX2a(2)
<---------
YAB1
<----
agtggtaaacgatagagaagttctaggcttagctagatataggttttggacgatatggatagatcaatcctttggtttgatatgaaagagataaaagacc
16052900
<---------
GLK1(2)
<---------
YAB1
<-----
<-------
TEIL
--------->
LBD16
--------->
CCA1(2)
--------->
HSFB2a(2)
--------->
ARR14(2)
<---------
HSFB2a(2)
<---------
At4g35610
------->
TEIL
<---------
ARR11(3)
--------->
ANAC46
<---------
YAB1
--------->
GLK1(2)
<------
ZmHOX2a(2)
--------->
LBD16
<---------
GLK1(1)
<---------
ARR11(3)
<---------
ARR11(3)
--------->
HSFB2a(2)
------>
At4g35610
--------->
ARR11(3)
--------->
ARR11(3)
<---------
LBD16
-------
RAV1(2)
---------->
DOF2
--------->
ZAT14
<---------
ARR14(2)
<---------
HSFB2a(2)
agatgaattctgcttagttcaaagcatggagattttgtctgtgaaccctagatcaagatacacttctgattctctctctctctcttcccggaacatgtag
16053000
<<<<<<<<<
MYB98
<----------
DOF2
----------->
GT1
<---------
DAG2
<---------
ANAC46
*
TSS
<---------
ANAC58
---------->
ID1
---
<-----------
RAV1(1)
--------->
ATHB12
---
--------->
ARR11(3)
--------->
At4g35610
<--
<---------
ARR11(3)
<---------
At4g35610
-----
--------->
TOE2(3)
----------->
GT1
<---------
ZAT14
------>
NtERF2
<------
<---------
ALFIN1
<---------
ANAC58
--------->
ZAT14
<---------
RAP2.6(2)
--------->
At4g35610
----
ETT(2)
<---------
CCA1(2)
<----------
DOF2
<---------
WOX13(1)
<---------
At4g35610
acaaaccctcacctaaatcttgttgcatatgttaaaaagttttcttttctgttcacagctaattgatttc
ggcccttttctactatagacagctctatat
16053100
----
------>
AHL20(2)
<---------
ATHB12
----
-------->
TBP
--------->
MYB46(3)
----
-------
AHL20(2)
<-------
TEIL
-------->
P
--------->
AHL20(2)
------>
TBP
--------->
AHL20(2)
--------->
WOX13(1)
----------->
TBP
<-------
-----
TBP
<---------
AHL20(2)
--------->
AHL20(2)
----------->
GT1
------>
ZmHOX2a(1)
<---------
ANAC46
ataaatagttgtatattttaatatgtggatgcatattaatatcaaccatggagggagaaaactattactcctataaatgagataaattgttgtttatacc
16053200
---
<-----
--------->
ANAC55(1)
------
--------->
ANAC58
--------->
ZAT6
------
--------->
ANAC58
<---------
MYB52(2)
<---------------
AGL15
----->
TOE1(3)
--------->
ANAC58
---------->
DOF2
--------->
MYB59
<------
----->
ANAC46
--------->
ANAC46
<---------
YAB1
<---------
YAB1
--------------->
AGL15
----->
TOE2(3)
--------->
ANAC58
<---------
AHL20(2)
<---------
ANAC58
<-----------------
AGL3
----
GT1
----------->
RAV1(1)
<---------
YAB1
<---------
ANAC58
----------------->
AGL3
cttaacatgccaacaaattacaagtaacacttattctatattattgttcaccaaaggctaagatgagtgtgatagaaattaggctctatatatagcatat
16053300
<-------
TEIL
<---------
AHL20(2)
<---------
ZAT6
>>>>>>>>>
GATA-1
------>
TOE2(3)
<------
ZmHOX2a(2)
----
ARR14(2)
<---------
ARR11(3)
--------->
ZAT6
--->
ARR14(2)
---------->
DOF2
--------->
AHL20(2)
--------->
MYB52(1)
--->
KAN4(2)
--------->
TOE2(3)
<---------
YAB1
----------->
GT1
------->
TEIL
------->
GAMYB
----
TaMYB80
<---------
WOX13(1)
<---------
ICU4
--------->
ARR11(3)
<---------
ARR14(2)
<--------
tcttagtagtcttagattgccttagttcgtcaaacaaacatttcgattacaaagatcgatatagataaaattcatgtatcgggactaacagtctatgaat
16053400
<---------
YAB1
--------->
YAB1
--------->
ICU4
<---------
YAB1
<--------
HAHB4
<---------
ICU4
--------->
ATHB51
-------->
HAHB4
<--------
ATHB1
--------->
YAB1
<---------
YAB1
--------->
ICU4
--------->
AHL20(2)
<---------
ATHB51
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
<--------
<---------
AHL20(2)
--------->
CCA1(2)
--------->
AHL20(2)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
AHL20(1)
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
---------->
DOF2
-
YAB1
--------->
ZAT6
----------->
RAV1(1)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
gaattagttagtataagtaagactatttacaacaacaacaaaaaaaaaaaaaaaaaaaaaattaataattataagaaaataagaaagatattagtatagt
16053500
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
<---------
AHL20(2)
<---------
MYB52(1)
<---------
ATHB51
<---------
ANAC58
--------->
ICU4
<---------
ANAC58
--------->
AHL20(2)
<---------
ANAC46
--------->
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
MYB52(2)
--------->
AHL20(1)
--------->
LBD16
<---------
MYB52(1)
<---------
AHL20(2)
--------->
HSFB2a(2)
----------->
GT1
--------->
AHL20(2)
<---------
LBD16
-
ZAT14
--------->
AHL20(2)
<---------
AHL20(2)
<---------
HSFB2a(2)
-
tgagacgttatttgagtttagaagaaaacaaaaaaatgaagaattttaaattttttgataccgtgatgcagtttccaggaaaaataattaaatacaaaat
16053600
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AGI:
At2g38300.1
Description:
DNA binding / transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G40260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73581.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 16051038
to: 16053070
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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