Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->At4g35610                                       <---------ZAT2                               <------NtERF2         ===================================HOX2a_HOX2a         ------>ZmHOX2a(2)    --------->LBD16  <---------AtMYB61          <---------DEAR3(1) --------DEAR3(1)            --------->ALFIN1 ------>ATERF1(1)            <---------ANAC46                               --------->ALFIN1 ----NtERF2   --------->ARR14(2)       <---------At4g35610               --------->ALFIN1 ------ORA47(2)             <---------LBD16                              <---------DEAR3(1) ------DEAR4(2)           --------->ATERF1(2)                           <---------ZAT14 ------ERF1  <---------GLK1(1)------>NtERF2 --------->LBD16             <---------ABI4(1) ------RAP2.3(1)          <---------ATERF1(2)                           --------->ZAT18 ------ATERF1(1)         <---------LBD16  <---------LBD16           <-----------RAV1(1) -->NtERF2   --------->GLK1(1)<---------MYB46(3)                  --------->YAB1 -----RAP2.3(2)         <---------At5g28300<---------ANAC46       -------->HAHB4     <---------YAB1 -----RAP2.6(2)        <-----------GT1 --------->ZAT2       --------->At5g28300      --------->ICU4 -----DEAR3(1)<---------ARR14(2)       --------->At4g35610 ----------->GT1<---------ANAC46        <-- -----RAP2.3(3)    <---------MYB52(1)<------ZmHOX2a(1)    ----------->GT1<---------AtMYB61    -------   ggcgatggtgatcggaaatccgtttttaccggcggggaaggagctgcggaagaggcgaagagggtaaatgatggtgcggtggaagtaatgaatgagataa  15929000                                                                                                <----                                 ----------->HVH21                                             ------                               <---------ANAC58                                                ------                               <---------ANAC58                                                ------                              <---------------------WRI1                   <------MYB83        ------                       <-------GAMYB      --------->MYB52(1)               <------MYB46(1)     ------                     <---------TOE2(3)   ---------->DOF2<------ZmHOX2a(1)<--------P  ----------->HVH21 ----ZmHOX2a(1)      <---------TOE1(3)  --------->AtMYB61     --------->ZAT18<---------ZAT18--------- -->CCA1(2)      --------->CCA1(2)--------->REM1(2)  <------ZmHOX2a(1)   --------->ALFIN1  ------->TEIL   ggagagaatagaagtagagatttagggttgagagcgtgacgaccaaaggggaagaggaggagagtgagccacaaggttgggctctccatgacgaaccaag  15929100                                                                                            <--------                                                                                            <------NtERF2                                                                                           <---------ATERF1(1)                                                                                           --------->LBD16                                                                                          --------->DEAR3(1)                                                                                          --------->ATERF1(2)                                                                                         --------->ATERF1(1)                                                                                         --------->DEAR3(2)                                                                                        <---------PCF2                                                                                        <---------ATERF1(1)                                                                                        --------->PCF5                                                                                       ----------->TCP11(1)                                                                                       <---------SPL7                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                   --------->MYB52(2)                                                                                   <---------MYB46(3)                                                                                  <---------DEAR3(1)                                                                                  <---------MYB46(3)                                                                                  --------->MYB111(1)                                                                                  --------->MYB111(2)                                                                                  --------->MYB46(2)                    --------->ANAC58                                              <---------AtMYB61                    --------->ANAC58                                              --------->MYB55(2)                    ----------------->AGL1                                        --------->ALFIN1                  --------->TCP15(1)                                             <---------MYB52(1)                  --------->TCP20                                                <--------P------>NtERF2                  <---------PCF2                                                 <---------MYB55(1)                  <---------PCF5                                                <-------GAMYB                 ----------->TCP11(1)                                          --------->MYB55(2)                 <---------TCP23                                               ------------>AtMYB15                 <---------TCP15(2)                                            <---------DEAR3(2)                 ----------->HVH21                                             ------------>AtMYB84         --------->ARR14(2)                                                    <---------MYB46(3)         <---------ARR14(2)           <---------ANAC46                       <------NtERF2<---------ATERF1(2)         --------->ARR11(1)  <---------SPL7                                 <---------RAP2.3(1)        <---------GLK1(1)    <---------MYB52(1)                             ------------>AtMYB77    --------->ALFIN1<-----------------AGL1            <---------ANAC58     <---------RAP2.6(2) -----ATHB12    <---------MYB46(3) <---------MYB52(1) <---------ANAC58     <---------DEAR3(1) >MYB46(1)--------->CCA1(2)--------->ANAC46          --------->ZAT2        <---------RAP2.3(2) >MYB83----------->ARR10   <---------------AtSPL3  <------ZmHOX2a(1)      <---------ORA47(1)--------- --->ANAC58     --------->ABI4(2) <-------GAMYB --------->SPL7            --------->RAP2.6(3) --->ANAC58    --------->ALFIN1--------->SPL7  <---------MYB52(1)        <------ZmHOX2a(1)<---------DEAR3(1) --->ANAC46<-------TEIL   <---------LBD16     <---------SPL7 <------ZmHOX2a(1)<---------DEAR3(1) >MYB46(3)--------->ARR14(1)--------->LBD16<---------At5g28300     <---------HSFB2a(2)<---------MYB46(3)   caatcggtggagatacggtgggaccccatccggtacggttgtgtttaccgtaaggagcttggaggaatttcagaaggacggcggttggtgggccggcgaa  15929200                                                                                             <-------                                                                                          --------->YAB1                                                                                         ============                                                                                         ------------                                                                                   <------ZmHOX2a(2)                                                                                   --------->GLK1(1)                                                                                   <---------GLK1(1)                                                                                  --------->AGP1                                                                                  <---------ARR11(3)                                                                                  --------->ARR14(2)                                                                                  <---------AGP1                                                                                  <---------ARR14(2)                                                                                  --------->ARR11(3)                                                                                 --------->At4g35610                                                                                 <---------CCA1(2)                                                                              <------ZmHOX2a(2)                 <---------ARR14(2)                                          <---------ARR11(3)         <------ZmHOX2a(1)                             <---------ANAC46      --------->ARR11(3) -------------WRI1         ----------->GT1            <---------LBD16    ---------->DOF2 <----------- >RAP2.3(1)      --------->ARR14(2)                  <-----------GT1 <---------LBD16------>ZmHOX2a(2)   aataagagtgaggagacagtatcggaagaaggttttatcggcgatttcttccatttttcgggttatggaattggggaaagatcagatctctctaataagg  15929300                                  --------->AHL20(2)                                  <---------AHL20(2)                 --------->AHL20(2)                        <---------AHL20(2)                           <---------AHL20(2)                        <---------YAB1                               <---------AHL20(1)                      <---------------AGL15                          --------->AHL20(1)     ---------                      <----------DOF2                               <---------AHL20(2)      <--------                      --------------->AGL15                    --------->At5g28300          ---------                      --------->TOE2(3)   <---------AHL20(2)  <---------ZAT6     --------->MYB52(1)                     ========================================================================MADS_MADS --ICU4              <-----------------AGL3           <---------WOX13(1)        <---------ATHB51 ======================================MADS_MADS   <---------YAB1   --------->AHL20(2)     *TSS --->AGL15         --------->ARR11(3) <---------AHL20(2)      ----------->GT1   <---------ATHB12    - ----AGL15         <---------ARR11(3)<---------AHL20(2)   <---------ZAT14    --------------->AGL15 <-   gcagaatcaactccaattggagaactttaattggaattttttattttttgggtctgattgtttactgtaaataaattcacaaataatggaatagttcaca  15929400                                                                          <---------AHL20(2)                                                                         --------->AHL20(2)                                                                        <---------YAB1                                                                     --------->ICU4                                                                   ------->TEIL   --------->YAB1                                                <---------ZAT18  <---------YAB1                                                 --------->ZAT18 >ZAT18                                                        --------------->AtSPL8 -ZAT18                                                       <---------ANAC46--------->ARR11(3) >ZAT14    --------->HSFB2a(2)                            <---------TOE1(2)   <---------ARR11(3) -------->YAB1     ---------->ID1        <-------TEIL     <---------TOE2(2)  <---------CCA1(2)  <---- --------YAB1  <------------CBF    <---------DOF5.7(2)  <---------SPL7<---------ICU4        ---------   catgataatattactagaattgtcgtttttcacatgtaaacgattcatttctcgtggtcgtatgatgtgtacttattatatatctctaactcattcatct  15929500                                                                    <---------YAB1                                                         --------->TGA1a                                                         --------->O2<--------HAHB4                                                         <---------O2<---------ICU4                                                         <---------TGA1a <-----------GT1                                              <------MYB46(1)       --------->ICU4                                              <------MYB83      ------>NtERF2               >>>>>>>>>>GT-3b      ---------->DOF2   <---------ZAT18--------->ATHB51              <- ------DOF2 <---------TOE2(3)       ===============================bZIP_DOF                       <-- >YAB1--------->ICU4    ----------->GT1  --------->GLK1(2)     --------->RAP2.6(2)                ---   tttgggtcatttttaagaaaaatagtaagtgaaatctctaaagaagctaggttttggccacttggccaccattattaactaattcaatctctagactgaa  15929600                                                                                            ---------                                                                                          ===========                                                                                          <---------ANAC58                                                                                          ===========                                                                                          <---------ANAC58                                                                                          --------->TGA1a                                                                                          <---------TGA1a          <---------WOX13(1)                             --------->AHL20(2)               <---------O2   <---------AHL20(2)                                 --------->ATHB12                    --------->O2 --------ICU4                   <---------AHL20(2)   <---------YAB1                <---------YAB1 -------ATHB12        <---------ZAT14             <---------AHL20(2)           <---------ANAC58 ------>ICU4--------->YAB1----------->GT1  <-----------GT1<---------AHL20(2)   <---------ANAC58   atcatttttttgaatgatactgacaatactgtatataaaaactaatttctattttatgatttaatcggaagtatatatagtgcttatcacagacgtgcca  15929700                                                <---------AHL20(2)                                                <---------YAB1                                      ------->TEIL        <---------WRKY45    <-----------ARR10        ---------->DOF2   <---------AHL20(2)          --------->DAG2    <---------ARR11(3)   ---------->DOF2--------->YAB1    <---------WRKY38(1)    --------->ARR11(3)  --------->AHL20(2)<---------AHL20(2)              <---------ZAT14   --------->RVE1(1)--------------->AGL15<---------AHL20(2)               --------->ZAT14          --   --------->CCA1(1)============================================================MADS_MADS          <- -->HVH21           <---------------AGL15--------->AHL20(2)---------->DOF2---------->DOF2          <- ===================================bZIP_DOF   --------->AHL20(2)      ----------->GT1             -- ===================================bZIP_DOF  --------->YAB1    <---------------AGL15       <--------   gagaaatatctactctaacttccaaataaaagaaagaatgaattttaattttaattctagtcaaagctctaaacagtaaagtgtccaaggagagcgtttt  15929800                                                                                    ----------->RAV1(2)                                                                                  --------->ANAC58                                                                          <-----------HVH21  <---------HSFC1(1)                                                     ------->GAMYB  --------->HSFB2a(2)                          <-------GAMYB            --------->MYB46(3)  <---------HSFB2a(2)                         --------->MYB55(2)      --------->ARR14(2) ------>ZmHOX2a(2)       ---------->DOF2      --------->MYB52(2)      <---------ARR14(2) =====================================HOX2a_HOX2a        ---------->DOF2<------------AtMYB77 ------->ARR14(2)    <--------P<------ZmHOX2a(1)    ---------->DOF2   --------->MYB52(1)            - --------ARR14(2)   <-------GAMYB             <---------MYB46(3)     ----------->HVH21            --- --------AGP1       <---------MYB52(1)        --------->ABI4(2)     --------->At5g28300         ----- ------->ARR11(3)  --------->LBD16           <---------AtMYB61     --------->RAP2.6(2)   ---------->DOF2 --DOF2          <---------LBD16             --------->ALFIN1---------->DOF2      --------->ANAC58---   ggatctagaagactcgttctccggttgcaaagaggagccaaaacacggtggttgcaaagtaaagaaaggccgtaaccgtcaagaacgcctgaaaagagcc  15929900  Previous    Next  AGI:  At2g38050.1    Description:  DET2 (DE-ETIOLATED 2). Identical to Probable steroid reductase DET2 (DET2) [Arabidopsis Thaliana] (GB:Q38944;GB:Q9SH83); similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT5G16010.1); similar to steroid 5-alpha-reductase [Gossypium hirsutum] (GB:AAZ83346.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase (InterPro:IPR016636) Range:  from: 15928214    to: 15929391    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g38060.1    Description:  transporter-related. similar to transporter-related [Arabidopsis thaliana] (TAIR:AT3G46980.1); similar to transporter-related [Arabidopsis thaliana] (TAIR:AT3G46980.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO15779.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 15929635    to: 15932701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version