Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------------------WRI1                 <------MYB83        <XXXXXXXXXXXXXXXXXXXXMIR842        --------->ATHB12       <------ZmHOX2a(2)      --------->ARR11(3)      <---------ARR11(3)     <------ZmHOX2a(1)                                   --------->ANAC58  <-----------RAV1(2)  --------->YAB1             ----------->GT1 ------>DOF2     <------MYB46(1)           >>>>>>>>>RAP2.2    <------NtERF2 ---->DOF2  --------->ATHB12 ---------->DOF2 ---------->DOF2--------->RAP2.3(3)               <------ ->YAB1<---------YAB1 <---------YAB1    <---------CCA1(2)--------->ANAC58           ---------->DOF2--   agagccaggatcattgatttggttatgaaaacaaagaaacacatatctaaaggagtaataagcccccaaaacatcatccatggctagaaagtagcaatga  15921400                                                                                                  <--                                                                                           --------->ZAT2                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                           <---------ZAT2                                                                                          --------->MYB52(2)                                                                                        --------->DOF5.7(2)                                                                                        <---------MYB52(1)                                                                                       --------->TOE2(3)                                                                                      <---------ANAC58                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC58                          <---------WOX13(1)                                          <---------ANAC55(2)    ---------->DOF2  --------->At4g35610                                <-----------GT1--------->TOE1(3) ---ATHB12           <---------At4g35610                            <---------ARR14(2)<---------YAB1 --------->GT1 <----------DOF2                        --------->At4g35610           <-----------GT1   attgctaaaagagaactcttttaagctgatggacacaaaatcacacttaaaaaatcatctaaaaatcgcaaatttgaccctagaaattacgttagctgcg  15921500              --------->At4g35610              <---------ZAT2              <---------At4g35610              --------->ZAT2                         --------->AHL20(2)                            --     --------->ANAC46               <---------ATHB12 <---------AHL20(2)                 --------->YAB1 ----ZmHOX2a(2)         <-----------GT1       --------->ANAC46            ---------->DOF2 ------->TEIL   atcaaactcgaaactaagctgaattttttcaattcccaatctataactacacaatttatatgaagactaatctaggtaaaggctctacaatgaaactgga  15921600                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   --                                                                                                   <<                                                                                                   <<                                                                                                   <<                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                            <--------             --------->WOX13(1)                                                             <--------        <-------TEIL                                       --------->ICU4                   <--------   ---------->DOF2                                    ----------->GT1                      <---------TOE2(3)  --------->YAB1                                 <---------DOF5.7(2)                     --------->TOE2(2) <---------ATHB12       --------->TOE2(3)        ---------->DOF2                 --------->YAB1 <---- ------->WOX13(1)       <----------DOF2        --------->DOF5.7(2)          <------ZmHOX2a(2) <------   gcaatcaaagttcatcaatctcattactttaatcgattttgagaacgtcgttaaaggagtaatatttgataaacatcgatcaataagaaaacttacgttt  15921700       <------ZmHOX2a(1)                                                                   <<<<<<<<<ARR1 ---------->DOF2                                                                           <------ZmHOX2a(2) ---------WRKY12                                                                           <<<<<<<<<ARR2 ---------WRKY38(1)                                                                       <---------ARR11(3) ---------WRKY45                                                                          --------->ARR14(2) ------->WRKY18(1)                                                                        <---------ARR14(2) <<<<<<<<WRKY18                  --------->ETT(2)                                  --------->ANAC58 <<<<<<<<WRKY62            ------->TEIL                              --------->ANAC58   *TSS <<<<<<<<WRKY40         --------->ANAC58                             --------->ANAC58   --------->ANAC58 ---MYB46(1)            --------->ANAC58      <------ZmHOX2a(1)      --------->ANAC46   --------->ANAC58 ---MYB83              <-------TEIL     --------->SPL7    ------>ZmHOX2a(2)        --------->ANAC46 ---->MYB59          <---------SPL7   <---------SPL7     <------ZmHOX2a(2)         --------->ANAC58 -ANAC58           --------->ANAC58   ----------->HVH21 <---------ARR14(2)     --------->ANAC46 -ANAC46           <---------------AtSPL8     ==================HOX2a_HOX2a    --------->ANAC58 -ANAC58   --------->GLK1(2) <---------AHL20(2)         --------->ARR14(2)     --------->ANAC58 -----MYB46(3)     <---------------AtSPL3     ===================HOX2a_HOX2a  --------->WOX13(1) ---MYB52(1)       --------->ANAC58--------->MYB52(1)  <---------GLK1(1)     ---------->DOF2  ------>ZmHOX2a(1)   ggtcaaagaggagaatcgagcaaggtacgaatttatcgaccggacgaaggagtttggagatcggagcgaagacgaaacatcaagcaagccacgatcctat  15921800                                                                                                    <                                                                                                   <-                                                                                                <----                                                                                              <------                <----------DOF2                                                             ---------                <---------DAG2                                                              <--------               --------------->AGL15                                                        -------->ATHB1               <---------DAG2                                                               <--------HAHB4               <---------------AGL15                                                        <--------              ----------------->AG                                                          ---------              ----------------->AGL1                                                        ---------              ----------------->AGL2                                           <---------AHL20(2) ---            <-----------GT1                <----------DOF2                    --------->AHL20(2)-----        <---------AHL20(2)           <---------AHL20(2)                     --------->TOE2(3)--------        --------->AHL20(2)       <----------DOF2                  <---------TOE2(3)        --------->ICU4        --------->AHL20(1)       <---------DAG2       <-----------GT1    <-----------GT1   <---------ATHB51       --------->AHL20(2)     <-----------GT1  <---------YAB1  <---------AHL20(2)      ------------>CBF   tttcttcaaattaattacctttttcagaaaatatacttttttattctttttgataaataccatattttatggattttacattaatttggaacaattattt  15921900    <-------TEIL --------->YAB1 -------->HAHB4 ---------YAB1 --------TOE2(3)   <---------AHL20(2) -----AHL20(2)   <---------YAB1 ---YAB1       <---------AHL20(2) >AHL20(2)     --------->ATHB51 -AHL20(2)     <---------ICU4 -ICU4         --------->AHL20(2) >ATHB51      --------->ICU4                               --------->ALFIN1 >YAB1     <---------YAB1                            --------->AHL20(1)                   <---------ICU4 ------>YAB1--------->YAB1                          --------->YAB1                       --------->ICU4 ---->AHL20(2)<---------YAB1                      --------->AHL20(2)                   --------->YAB1 ->AHL20(1)<---------AHL20(2)            <---------AHL20(2)<---------ANAC46--------->AHL20(2)    <---   taatgatacatgtataattatttttttttaaactatgggttatttttttcaaaaaaataatgtgtggatgtttcaaaaaaaatcaaatttcataatgaaa  15922000                                                  <-----------GT1                                                 <---------YAB1                                               --------->YAB1                                               -------->ATHB1                             <---------DAG2                                               --------->ATHB51                      <----------DOF2                                               <---------ICU4                     ------>MYB83                                               <--------HAHB4                   <---------MYB59------                                              <---------YAB1             <---------AHL20(2)   <------                 <---------ARR11(3)           --------->ICU4             --------->AHL20(2)<---------                 --------->ARR11(3)           <---------ATHB51    <-----------GT1 ------>MYB46(1) ------MYB52(2)----------->GT1         --------->MYB46(3)   --------->ETT(1)  --------->MYB52(1)   caaacaaaaattcgaagaagataatacacattgtgttgagaacaaacaattattacacattgtcggattaaccatataaataccgaactttgccttttga  15922100                    ----------->GT1--------->At4g35610<---------ICU4                   <---------TOE2(3)            --------->YAB1                           <----------DOF2                   <---------TOE1(3)      ----------->RAV1(1)                   ----------->HVH21 --->ATHB12 ---------->DOF2        <---------At4g35610<---------AHL20(2)       <---------WOX13(1) ---YAB1 --------->TOE2(3)  --------->TOE1(3)   --------->TOE2(3)        <---------TOE1(3) -DOF2   --------->TOE1(3)  --------->TOE2(3)  ----------->GT1           <---------TOE2(3)         <-   tttggccaaaaccttaaagttaaggtaaaaccttcatagctgtccaacaatgttaataaatccatcttagagtttaaggtcattgacagaactttcagta  15922200                                                                                           <---------At4g35610                                                                                           <------NtERF2                                                                                           --------->At4g35610                                                                                       ------->GAMYB                                                                                      --------->ANAC46                                                 --------->AHL20(2)                  --------->At4g35610                                                 <---------AHL20(1)                 --------->MYB52(1)                                    --------------->AGL15                          <---------WRKY12                                   <-----------------AGL1                          <---------WRKY38(1)         ---------->DOF2          <-------TEIL   <---------AHL20(2)         <---------ATHB12   ---------->ARF1    --------->ANAC55(2)  ----------->GT1                  --------->AHL20(2) ---------DOF2     ------>ZmHOX2a(1)<---------------AGL15       ----------->HVH21<-----------HVH21   actttgtctcccaaagcactccttatgtgatacacatacactaatgggtaaaaaatttcaatttctctgaccatatcaataaatgtcaacggcagaggca  15922300  Previous    Next  AGI:  At2g38020.1    Description:  VCL1 (VACUOLELESS 1). similar to vacuolar protein sorting-associated protein VPS16-like [Oryza sativa (japonica cultivar-group)] (GB:BAB90498.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69993.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57637.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Vps16, C-terminal; (InterPro:IPR006925); contains InterPro domain Vps16, N-terminal; (InterPro:IPR006926); contains InterPro domain Vacuolar protein sorting-associated protein 16 (InterPro:IPR016534) Range:  from: 15916986    to: 15921788    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g38025.1    Description:  similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.1); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.3); similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G57810.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15771.1); contains InterPro domain Ovarian tumour, otubain (InterPro:IPR003323) Range:  from: 15922036    to: 15923811    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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