Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->YAB1                   ------>MYB83 <---------ATHB12                                          <----------                   ------>MYB46(1)                                                  <---------ARR14(2)         <------ZmHOX2a(1)----------->GT1                                           --------->ARR14(2)    <----------DOF2--------->MYB52(1)                                         --------->WOX13(1)  <-- ---------ALFIN1 --------->TOE1(2)     <---------ALFIN1  <------ZmHOX2a(1)   ---------->DOF2      ---   caacacctttaggaaaaaacctagcagaaggcaaatcatcaacactctcaaacaattgaggaccatctctatcagtccataaatcaaatccaccaggttt  15876700                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                <---------YAB1                    ---                                                          --------->MYB55(2)                      ---                                                          <---------MYB46(3)                     <---                                                         <---------AtMYB61                       ----                                                    --------->ARR14(1)                          <----        ------>ZmHOX2a(2)                          <---------ARR14(2)                           -----       <------ZmHOX2a(2)                           --------->ARR11(1)                          <-----      <---------ARR14(2)                           <---------GLK1(2)                           ------      --------->ARR14(2)          --------->At4g35610   <---------MYB52(1)             >>>>>>>ZML2--- -RAV1(2) --------->LBD16       <---------ICU4   ----------->ARR10      <---------ARR14(2)    <------ -------HSFB2a(2)              --------->At4g35610 --------->ARR14(2)   --------->ARR14(2)    ------- ------>HSFB2a(2) <----------DOF2 <---------At4g35610<-------TEIL  ------->TEIL   <---------MYB46(3)-   ctgaaaccgatccgcgagtactttaacttgctcatcagcacaaactgagaatagattcggtggtttatgaatcggttcccatggtcgttctagctcagcc  15876800     <---------DAG2     <----------DOF2   ------>NtERF2  --------->DEAR3(1)  --------->RAP2.3(2) --------->DEAR4(2) --------->RAP2.3(1) ----->NtERF2 ------->AtMYB61 ------->DREB2C(2) --------ALFIN1 ------->DEAR3(1) ----->GAMYB                              <---------ANAC58 ------->ANAC46                       ------>ZmHOX2a(2) ------>MYB46(3)                     --------->CCA1(2) ----NtERF2                          <------ZmHOX2a(2) ------>ATERF1(1)                    <---------At4g35610 ------>DEAR4(2)                    --------->ARR11(3) ------ATERF1(1)                    <---------ARR11(3) -->NtERF2           --------->ARR14(2)   <---------ANAC58 -----ALFIN1         <---------ARR14(2)----------->HVH21 ---->DEAR3(1)     <----------DOF2  --------->AGP1 ----MYB55(2)     <------NtERF2     --------->ARR14(2)               --------->GLK1(2) --->MYB46(3)  <------NtERF2        <---------AGP1               <---------HSFB2a(2) ------>DEAR3(2)<---------ANAC46    <---------ARR14(2)           --------->HSFB2a(2)             <--- ---At4g35610<---------DEAR3(1)    <---------CCA1(2)          <----------DOF2                    ---- -->At4g35610---------->CDC5      ----------->ARR10          <---------ANAC58           <---------ANAC58 -------->ABI4(1)------>NtERF2 <---------ANAC46              <---------ANAC58           <---------ANAC58   accgccgcttttagctcggcgcgttttcgcatctcgtagatctgacgttctctgcataaccttgctttgagaagctgtttctgtttcttcgcttgcatcc  15876900                                              --------->ABI4(1)                                     --------->TOE1(1)                                    --------->HSFB2a(2)                                 --------->ARR11(3)                               --------->HSFC1(2)                               --------->HSFB2a(1)                               <---------HSFC1(2)                          <------NtERF2       ------>NtERF2                         ------>NtERF2       --------->DEAR3(1)                         --------->LBD16     ------->GAMYB                         <---------LBD16     --------->DREB2C(2)                        --------->DEAR3(1)  --------->MYB46(3)          --------->LBD16                       <---------LBD16    --------->AtMYB61            <---------ANAC58                      --------->ABI4(1)   <---------ALFIN1             <---------ANAC58                      ------>NtERF2 <---------LBD16                    <---------ANAC46                     --------->DEAR3(1)  --------->MYB46(3)        <---------GLK1(1)          --------->ICU4<---------ANAC46--------->SPL7             --------->GLK1(1)       ----------------->AGL1  <---------HSFB2a(1)           <---------MYB46(3) -------DOF2 <---------YAB1  ---------->DOF2--------->DEAR4(2)<-------GAMYB    --------->ALFIN1     - -->ZmHOX2a(1)    <---------ALFIN1  <---------HSFB2a(2)  ----------->HVH21     <-----------RAV1(1)---   ttttccattgccattttgatacaccgccggggaaagttctcggaccaccgcccatacggatgactgttgatttccgtggctgtgttggagagggtttgag  15877000                                                                                               <-----                                                                                              ------>NtERF2                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            <------NtERF2                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           <---------RAP2.3(1)                                                                                           ------>NtERF2                                                                                           <---------ATERF1(1)                                                                                          <---------DEAR3(1)                                                                                          --------->DEAR3(1)                                     --------->LBD16                               <---------ATHB12                --------->ATHB12     <---------At4g35610                           ==================             <----------DOF2       <-------TEIL                    <------ZmHOX2a(1)--------->YAB1   <------ZmHOX2a(1)               <---------LBD16                 =======================HOX2a_HOX2a -------->CCA1(2) <---------WOX13(1) --------->At4g35610        <-----------RAV1(2)<------ZmHOX2a(2) ------>CCA1(2)<---------YAB1    <---------SPL7        --------->ATHB12----------->GT1  <-----------HVH21   agataggagagagagctttgattggagagaattgaggtccggtgagaagaacgatgttgatttgaagcaggagaggttaattccgatcatcgtcgccgcc  15877100   <---------At4g35610   --------->At4g35610   --------->ZAT2   <---------ZAT2 -NtERF2 ->ATERF1(2) ->RAP2.3(3) ->RAP2.3(2) --ATERF1(2) ->DEAR3(1)                                        <------------CBF ->ANAC46<------ZmHOX2a(1)   <-----------GT1     <---------AHL20(2) ->RAP2.6(2)           <---------AHL20(2)        *TSS ->DREB2C(2)           --------->AHL20(2)<---------RVE1(1) ->RRTF1(3)           <---------AHL20(2)<---------GLK1(2) ->RRTF1(2)           --------->AHL20(2)<---------ARR11(3) >ATERF1(1)           <---------AHL20(1)<---------ARR14(2) >RAP2.3(1)     --------->ANAC58        --------->ARR14(2)                      --------------->AGL15 >RRTF1(1)      --------->ANAC58      --------->LBD16                         ------------>CBF <----- >ORA47(2)  --------->At4g35610      <---------HSFB2a(2)             <------------CBF  <---------TOE1(3) >DEAR4(2)  <---------At4g35610      --------->HSFB2a(2)  <----------DOF2    <-----------GT1   <----- >ERF1 <---------TOE2(3)--------->AHL20(1) <---------AHL20(2)      <---------AHL20(2)  --------->MYB59 ===============HOX2a_HOX2a<---------AHL20(2)    <---------YAB1   --------->AHL20(2)   <---------TOE2(3)   attggagctgaggaagccgagcaaattattttatccgttccagattttttttttattgttctttaatataaaattgattttacaatttttaggttgactt  15877200        ------------>CBF      --------->At4g35610                                <---------ZAT18      <---------At4g35610                                --------->ZAT18    <---------WRKY38(1)                        <---------AHL20(2)    --------->ZAT14                            <---------AHL20(1)    <---------ZAT18                            --------->AHL20(1)    <---------WRKY12      <-----------GT1     --------->YAB1 ----DAG2              ----------->GT1        <---------AHL20(2) -----DOF2      <-----------GT1               --------->AHL20(2)             <---------ATHB12   tttcagtcaactcaattttcacaaaatgttacaaaacaactctcttaattatattcgaatgcacacacacacatatcaaatcaataaccaaaaaacattc  15877300                                                                   --------->LBD16                                                                  --------->ANAC46                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                 <---------LBD16                      --------->ZAT6                            <---------ALFIN1                  <-------GAMYB                         --------->ANAC46                 <------MYB83                           --------->ANAC58                 --------->MYB52(2)                     --------->ANAC58                 <---------MYB46(3)                   ---------->DOF2                 ----------->GT1         <---------ARR14(2)    --------->DEAR3(1)               <--------P                <---------ARR11(3)  <------NtERF2              <-------GAMYB              --------->ARR14(2)  <---------ATERF1(1) --------->TOE1(2)             <------MYB83                --------->KAN4(2)   ------>NtERF2      --------->ANAC58             <---------MYB46(3)          --------->ARR11(3) --------->ANAC58    --------->ANAC58 ----             <------MYB46(1)            <---------KAN4(1)   --------->ANAC58   ------->TEIL   -------            <---------AtMYB61 --------->ANAC58      ------>ZmHOX2a(1)       <---------MYB52(2)-------            --------->MYB59   --------->ANAC58     --------->TOE2(3)       --------->At4g35610-------  <---------YAB1 <------MYB46(1)        <---------GLK1(1)  --------->DEAR3(1)<---------ZAT18  -------   cattctcatagggtttggttggttacactcacaagttattgaatatccctattcctaaacgcccgcccacggaaaacagcgaacccaagagcatgcccga  15877400     <------NtERF2     <---------ZAT2                                                    --------->RAP2.6(3)     --------->ZAT2                                                   --------->MYB52(1)   <---------RAP2.6(2)                                    ---------->DOF2   <---------ANAC46     --------->WRKY12               <---------At4g35610  <---------LBD16     <-------GAMYB                  <XXXXXXXXXXXXXXXXXXXXMIR826                    < ------>DOF2      --------->DEAR3(1)       <---------GLK1(2)  <---------LBD16                       = -->ANAC46        <---------ALFIN1    <---------------------WRI1--------->LBD16         --------->SPL7 -->ANAC58        --------->AtMYB61  ------->GAMYB --------->STY1(2) ----------->HVH21<---------SPL7- -->LBD16      --------->ANAC46     --------->MYB46(3) --------->At4g35610           <---------ANAC58 -->ANAC58<------ZmHOX2a(1)       --------->MYB52(1) <--------P--------->RAP2.6(2)   <---------ANAC58   aaatcgcggctaggaaaacaccaccgttgaaggaaacaacagccagaatcactaggtagctaaagccggacttgacggtatacatagccgtgcgaaatgc  15877500                                             --------->ZAT14                                             <---------ZAT14                                             <---------ABI4(2)                                           <---------At4g35610                                           --------->At4g35610                                       <-----------HVH21                                      --------->O2                                      ===================================================bZIP_DOF                                      --------->bZIP60(2)                                      --------->TGA1a           --------->ZAT2                                    <---------ANAC46            <---------At4g35610                                    <---------ANAC58            --------->At4g35610             --------->RAP2.6(3)    <---------bZIP60(2)--------->ANAC46       --------->ANAC58             <---------ANAC58   --------->ANAC58            <----------ID1       --------->ANAC58      <---------WOX13(1)        --------->ANAC58 --------->ANAC58 ----------DOF2   ------>NtERF2  ----------->HVH21  --------->ZAT2      --------->ANAC58 ===============================================bZIP_DOF        <---------ZAT2---------->DOF2     <-- -------->TOE2(3)<---------ALFIN1----------->TGA1--------->DEAR3(1)     --------->ANAC46          <--   aactttagcaagcttatcggcaccctgtttgatggatgacgcgtcagagcaccgagcaagccactcagctaagaacgccagaaagaagacgaagataagt  15877600  Previous    Next  AGI:  At2g37920.1    Description:  EMB1513 (EMBRYO DEFECTIVE 1513); copper ion transmembrane transporter. similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G07750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73407.1) Range:  from: 15875658    to: 15877149    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g37925.1    Description:  COPT4 (copper transporter 4); copper ion transmembrane transporter. similar to copper transporter, putative [Arabidopsis thaliana] (TAIR:AT2G26975.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15742.1); contains InterPro domain Ctr copper transporter; (InterPro:IPR007274) Range:  from: 15877298    to: 15877775    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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