Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <------MYB83    <------MYB46(1)  <--------P  <---------MYB52(1) <-------GAMYB                                                             ------->GAMYB -----SPL7                                                  <-----------HVH21          <XXXXXXXXXXXXX -----ZAT14             <------NtERF2                   <---------MYB46(3)--------->MYB46(3)    <---- ---------AtSPL3     <---------LBD16                  <---------At4g35610--------->ANAC58  <---------ANAC58 -----------SPL14  --------->ANAC46             --------->ATHB12         --------->ANAC58  <---------ANAC58 -AtMYB61          <---------DEAR3(1)  <---------ARR14(2)  <---------MYB46(3)       <----------DOF2 -MYB46(3)        <---------LBD16      --------->ARR14(2)<-------GAMYB --------->MYB46(3)  <---------ANAC46   tacggttggccaataacatctacggcggaatgcagtttgtggattgggcaagattgagcggttgtcagtgaaaacaaccaaaaactcttttttgtgtgtc  15865900                                                                                        --------->At4g35610                                                                             --------->YAB1                                <---------ICU4              <---------MYB52(1)          <---------ZAT2        <-----------GT1    <---------ZAT18                 <-------GAMYB  --------->YAB1<---------At4g35610 XXXXXXXMIR835-3P    <---------REM1(1)                <---------GLK1(1)   <---------ICU4--------->ZAT2 -----ANAC46   <-----------RAV1(1)             <-----------GT1    <---------CCA1(2) <-----------GT1   ttatttgatgaaaccatatgttgttgtagcctactcatttctatctgttttactacatttccgttgttatatctaataataagaattttcagctcgaatg  15866000                                          --------->ZAT14             --------->MYB111(2)          --                                          <---------ZAT14    --------->ZAT18                    -----                                      --------->DAG2        ----------->GT1                    ------     <---------YAB1                  ---------->DOF2---------->DOF2   <---------MYB46(3)      -------     ------>ZmHOX2a(1)           >>>>>>>>>MYB2--------->HSFB2a(2) --------->DAG2         ---------->DOF2    --------->TOE2(3)        --------->YAB1   <---------HSFB2a(2)---------->DOF2       <---------YAB1   ttgaatccttatagtgtctatattgaaacaatgaaaaccaaaagtgttctgaaacaaagagagtgcaaaaagttgttggagcctgttttatgaaagaaaa  15866100                                                                                                -----                          --------->ANAC58                   --------->GLK1(1)             --------->ATHB12                          --------->ANAC58              ----------->GT1                    <---------ICU4                      --------->ANAC46           --------->MYB52(1)                        -------->HAHB4                      --------->ANAC55(1)        ----------->RAV1(1)                       --------->YAB1 -------->DOF2        <---------ANAC55(2)       --------->ANAC46                          <---------ATHB12 ------>GT1           --------->ANAC58        --------->ANAC46                 --------->YAB1<------- --->DAG2             --------->ANAC55(2)     --------->ANAC58         ---------->DOF2    --------->ICU4 --->DOF2             --------->ANAC58        --------->ANAC58  --------->TOE2(3)  --------->WOX13(1)   gtaaagagagaaacaaaaacaaacacgcaagaaatcaaacgactaaacacacaacagatggtgaaatctaaatcaaagtaagcataaatcaaatgattac  15866200                                   --------->TGA2(2)                                  <-----------HVH21                                 --------->ANAC58                                 --------->O2                                 =========================MYC_MYB                                 --------->ANAC55(1)                                 --------->ANAC58                                 <---------O2                                 --------->TGA1a                                 --------->ANAC55(2)                                 --------->bZIP60(2)                                 <---------TGA1a    ------>MYB46(1)                           ================MYC_MYB  ------>MYB83                           ------->GAMYB            --------->ANAC46                          --------------->AtSPL3    --------->ANAC58                <-----------GT1  --------->ANAC46   --------->ANAC58              --------->AHL20(2)<-----------bZIP911(2)              <---------AHL20(2)<-----------STF1  ------->GAMYB          <---------AHL20(2)   <---------ALFIN1   --------->AtMYB61                                <-          --------->AHL20(2)  <---------REM1(2)  <---------MYB55(2)                                --     ----------->GT1      --------------->AtSPL8 --------->MYB46(3)                               ---    ----------->GT1      <---------At5g28300--------->ANAC46                                      --- --------->ALFIN1   ----------------------->TaNAC69(2)          <---------ARR11(3)                --- ------------>AGL1 ----------->GT1<-----------TGA1<---------ALFIN1                          --------- --YAB1   --------->ICU4<-----------GT1--------->AtMYB61        --------->ARR11(3)       --------->YAB1   agaatgggggaaaaaattaaacggtataaccgtacacgtcaccaaaacacaaccaccccactaaaacatcttactagttactagtatataagaatcatca  15866300                                                                                   <----------DOF2                                                                                  <---------ANAC46                                                                        <-------GAMYB --------ZAT18                                                         <---------MYB46(3) ----->GAMYB                                                           <-----------RAV1(1) ------>ANAC46   *TSS                                                  --------->MYB52(2) ------>ANAC58--------->ANAC58                                      ------------>MYB.PH3(2)    <----- ------>ANAC58--------->ANAC58      <------ZmHOX2a(1)          <---------REM1(1)  <---------ANAC58 >YAB1        --------->ANAC46     ----------->GT1          --------->ALFIN1      <---------ANAC58   acgcactaagtaagacactcaacaaaacaaaacaagaaggagaatataagaagaagcatgaagtgttgtaagtttgttgcagtggctttgatgagtcttc  15866400                                  --------->ALFIN1                                  <---------AtMYB61                                 --------->ZAT14                                --------->ALFIN1                              <---------ANAC46                          <---------ZAT2                          --------->ZAT2                          <------MYB46(1)                          --------->At4g35610                          <------MYB83                          <---------At4g35610                        <-----------RAV1(2)                        <---------MYB55(1)                    <------NtERF2                       <------NtERF2                         ------>NtERF2                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <------NtERF2                       --------->ATERF1(1)                  <---------DEAR3(1)                      ------>NtERF2 <-----------HVH21      <---------LBD16                      <---------RAP2.3(1)                  --------->LBD16                     --------->ATERF1(2)               --------->ANAC58                     <---------DEAR3(1)                --------->ANAC46                     <---------ATERF1(2)               --------->ANAC58                     <---------RAP2.3(2)            <---------ATHB12                     <---------RAP2.6(2)  --------->ANAC58 ------>NtERF2               <---------MYB52(1)<---------ZAT14  --------->WOX13(1)             <---------ANAC46 <---------ANAC58   --------->AHL20(2)         <---------ANAC58--------->MYB55(2)      <---------AHL20(2)                   --------->At4g35610         <---------ANAC58<---------MYB46(3)     <---------ATHB12                   <---------ANAC58 ------>ZmHOX2a(2)  --------->ATERF1(1)   --------->ANAC58--------->DEAR3(1)       <---------ANAC58 < ----At4g35610<-------GAMYB   <---------ANAC58--------->WOX13(1)            --------->LBD16----------   tgatctcacttgcttccgttgaggcggcaggtgagtgtggtcgcatgccaattaatcaagccgcggctagcctaagcccgtgtttgcctgctacaaagaa  15866500                                        <---------ZAT18              <---------ALFIN1          --------->ZAT14           --------->ARR14(2)        <------MYB83           <---------ARR14(2)       --------->MYB111(1)         --------->HSFB2a(1)        --------->MYB111(2)         <---------HSFB2a(1)        --------->ALFIN1        ------>ZmHOX2a(1)        --------->MYB59--------->At4g35610              <---------ARR14(2)  <-----------HVH21        <---------TOE2(3)      ---------->DOF2          ------>MYB46(1)    <---------bZIP60(1)        <---------TOE1(3)    ----------------->AGL1     --------->ARR14(2) --------->bZIP60(1)        --------->DAG2 <---------At4g35610            --------->AtMYB61  <---------At4g35610        - ---------STY1(1)   <---------MYB52(1)  --------->ZAT18 ------>MYB83<----------DOF2       <----------DOF2 >DOF2<--------P   <---------MYB52(1)<------MYB46(1) --------->MYB46(3)  --------->At4g35610    -----   cccgaggggtaaggttccaccggtttgctgtgccaaagttggtgctctcattagaaccaatcctcgttgtctttgtgctgtcatgctctctcctttagca  15866600                                                                         --------->ANAC58                                                                     ------>NtERF2                                                                    --------->ATERF1(2)                                                                    <---------ATERF1(2)                                                                  <---------ZAT2                                                                  --------->ZAT2                                                                  --------->At4g35610                       --------->ANAC58                      --------->ZAT18                 <---------HSFB2a(2)                        ------->GAMYB--------->ANAC58                 --------->HSFB2a(2)                        --------->DEAR3(1)                 ------>ZmHOX2a(1)                         --------->MYB46(3)                 --------->LBD16                           <------------AtMYB77       <------NtERF2<---------GLK1(2)         --------->At5g28300 <---------At4g35610      --------->LBD16  --------->ANAC58      ----------->GT1--------->RAP2.6(2)     --------->RAP2.6(2)                ---------->DOF2    --------->DEAR3(2)          ------->TEIL    <---------LBD16 --------->ARR14(2)------>ZmHOX2a(1)  <---------ARR14(2)     --------->ALFIN1 --------->DOF2 <---------LBD16 <---------ANAC58         --------->ARR14(2)   <---------ANAC46      < ----->DOF2 --------->WOX13(1)  <---------ANAC58      --------->ANAC46<------NtERF2    <---------TOE2(2)   aagaaagccggaatcaatcctggaatcgcaatcggcgttcctaaacgctgtaacatccgaaaccgccctgctggcaagcgatgtggacgtatgtattcca  15866700                                                  --------->ZAT14 <---------TOE2(2)                                           --------->YAB1 <----------DOF2                          --                                  ------->TEIL    <---------ZAT14 <---------TOE1(2)              ---- ---------YAB1    --------->At4g35610     <---------YAB1  <---------DAG2       <---------TOE1(2) <---   atattcttgtaaatctcatgagcttaatataacatgaacttgatatgatcacttcactaactttttcttatgttttgtttgcaggttacattgttccatg  15866800  Previous    Next  AGI:  At2g37860.1    Description:  LCD1 (LOWER CELL DENSITY 1). similar to RER1 (RETICULATA-RELATED 1) [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15721.1) Range:  from: 15863710    to: 15865998    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g37870.1    Description:  protease inhibitor/seed storage/lipid transfer protein (LTP) family protein. similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42440.1); contains InterPro domain Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140) Range:  from: 15866317    to: 15866985    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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