Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             ----------                                                                                           <---------REM1(1)                                                                          <---------ARR11(3)                                                                  <---------ANAC46     ------->TEIL                     --------->REM1(1)        <-------GAMYB    <---------MYB52(1)   <---------WOX13(1)  ------->TEIL     ----------->RAV1(1)       ----------->GT1   --------->ALFIN1  ----------->HVH21 -->GT1   <---------------AtSPL8       <----------DOF2    ----------->HVH21 ------>ZmHOX2a(2)     --- --ID1    <---------------AtSPL3 <---------YAB1     <---------LBD16       --------->ARR11(3)    <----   aatgtatatgtttttgtacagcaacatcatatattcttattcttttggggttaatctggagggacgttggggaaatgatctgtgtgatggatgttgtaac  15863300                                  <---------TOE2(2)                                  <---------TOE1(2)                          <---------YAB1                                 ------>ZmHOX2a(1)<----------DOF2         <---------YAB1                         --------->YAB1     <---------ANAC58              --------->ICU4         <---------ANAC58===============HOX2a_HOX2a   --------->AtLEC2  --------->YAB1 <-----------GT1       --------->ARR11(3)   <---------ANAC58  --------->AHL20(2)            <-------- ->GT1   <---------ANAC58------>ZmHOX2a(2)  --------->ANAC55(2)        <---------YAB1     --------->AHL20(2) -------->GT1          <---------ARR11(3) <-----------GT1   --------->AHL20(2)  XXXXXXXXXXXXXXXXXXXX>MIR835-5P -----ANAC46 ---------->ID1     --------->TOE2(2) <---------DAG2       --------->ICU4 <-------TEIL  -   ttgtaacattttcttgttctattttgatcttaatcctatgttttttacttgactttatgcaaaaatatatgttatgatgattcttggatacattatttat  15863400                                                                               <---------CCA1(2)                                                                            ------>ZmHOX2a(1)   <----                                                                           --------->TOE1(3)    -----                                                                      <---------ARR11(3)   <---------AHL20(2)                                                                      --------->ARR11(3)   --------->AHL20(2)     <---------AHL20(2)                                         --------->TOE2(3)         --------->AHL20(2)    <---------AHL20(2)                                          --------->TOE1(3)      <-------------    --------->AHL20(2)                        <---------YAB1  --------->ARR11(3)--------->ARR11(3) -YAB1                                      --------->YAB1    <---------ARR11(3)<---------ARR11(3) -------->AHL20(2)                         --------->ICU4<---------AHL20(2)--------->TOE2(3)   ------   gtataaataaatctatgactatgtttttaaactaattgtagagtatttatgatgcatattttaaaatcttaaaatctccttaaatctttctaataaatga  15863500                                                                               ------->TEIL                                                                               <---------ARR11(1)                                                                               --------->ARR14(2)                                                                              <---------CCA1(2)                                                                              <---------ARR14(1)                              <-----------GT1                         <----------DOF2 --------->TOE2(3)         <---------ICU4                             <---------DAG2               <- -----ARR11(3)          --------->YAB1                                --------------------->WRI1 ---- ---->ARR11(3)          --------->AHL20(2)                      <---------------AtSPL8          ----- --AGL15             --------->YAB1                         --------->ANAC55(2)<---------ARR14(2)<--- --->YAB1    <-------TEIL --------->ICU4       <----------DOF2  --------------->AtSPL8<---------ICU4<   tattcttaattttggttcgtcaagaataatatttatctcttacttaagtctttgacttatttatgtattgtactttattcgtatctcaaaattatgcaat  15863600                                                    <-------PIF4                                                    <-------MYC3                                                    ------->PIF4                                                    <-------PIF5                                                    ------->PIF5                                                    ------->MYC4                                                    ------->MYC3                                                    <-------MYC4                                                    ------->MYC2                                        <-----------ARR10                                       <---------At4g35610                               --------->ANAC58     <-------MYC2                               --------->ANAC58    ==========================bZIP_DOF                               <---------ANAC55(2) ==========================bZIP_DOF        --------->TOE2(3)      --------->TGA1a     <---------O2        --------->TOE1(3)      --------->ANAC46    <---------TGA1a        <---------ARR11(3)     <---------GLK1(2)         --------->ANAC55(2) --------->O2           --------->AHL20(1) ---------ID1                  --------->ANAC55(1) --------->TGA1a        --------->ARR11(3) ----->YAB1                    <---------TGA1a    ------------>OsbHLH66  --------->AHL20(2) ---->ICU4                     ==============================================bZIP_DOF         >>>>>>> ------ICU4                  <---------ALFIN1    <---------ALFIN1   ----------->GT1--------->ZAT14 ------ZmHOX2a(1)          <---------ALFIN1 <-----------GT1       ---------->DOF2  ---------->DOF2---   aaggacagaaccttaagggtttcagtttcccacacgtatgcagatgttaccacacgtgcaagagactgaaaagaaatatatacagtgaagccgaagaaaa  15863700                                                <---------CCA1(2)                                             --------->SPL7                                           ------>NtERF2                                           --------->ORA47(1)                                           <---------SPL7                                          --------->DEAR3(1)                                         <------NtERF2                                         --------->RAP2.3(1)                                         --------->ATERF1(1)                                        <---------RAP2.3(1)                                   -------        --------->ALFIN1                ------>NtERF2                               <-----------HVH21   <<<<<<<<<<<<<<<<<LFY                <---------ETT(2)                            <----------DOF2   ----------->RAV1(1)               <-----------HVH21                           ------>ZmHOX2a(1) <-  --------->ANAC46                  <-----------RAV1(1)                 --------->HSFB2a(1)   <------ >>>GT-3b *TSS                  --------->MYB46(3)           ------>ZmHOX2a(1)------>ZmHOX2a(1)------ ------->DOF2    <---------ATHB12<---------ALFIN1      ------>ZmHOX2a(1)<---------HSFB2a(1)   <------   ataagcgccagtggccctaatcactcttgcagtcaccactgtcgccgtccgtctctccttctccttcttagggaccattcctcctctttcagaccagatt  15863800                                                                   <---------ICU4                 <---------ICU4                                   <---------YAB1     <---------TOE2(3) <xxxxxxxxxxxxxxxxsmallRNA(i)               --------->ICU4     <---------TOE1(3)--------->At4g35610                   <---------ARR11(3) -->ARR14(2)     --------->ATHB12                           --------->ARR11(3) --------TOE1(2)<---------YAB1                    --------->DOF5.7(2) ---GLK1(2)--------->YAB1---------->DOF2          <---------MYB52(1)                       --------->HSFB2a(2) --->GLK1(2)  --------->YAB1                     <-------GAMYB------>ZmHOX2a(2)            <---------HSFB2a(2) ---ARR14(2)  <---------ICU4       <---------ATHB12    <-----------RAV1(1)      <---------ANAC46    -   ctaggttagggtttcatcatcatcggctaaagtttcaatctttgaaatttccgttatctgttgatctcattattctctgattttgtgtagtttccacaag  15863900                                                           --------->HSFB2a(1)                                                           <---------HSFB2a(1)                                                           --------->HSFC1(2)                                                   --------->HSFB2a(2)    <---------ANAC58                                                   <---------HSFB2a(2)    <---------ANAC58                                             --------------->AGL15    <---------ANAC58            <-------TEIL                     <----------DOF2    <---------YAB1<---------ARR14(2)     <----------DOF2                         <---------------AGL15    <---------ANAC58 <-----------GT1                        ---------->DOF2    <---------HSFC1(2) --------->ARR14(2) -------->KAN4(2)            ---------->ID1 <-----------------AGL3 <---------CCA1(2)           ------   tttattccttttgatacattcttggggttttgttgtatttgcaaaagctttttttggaagaagcttcttatagcttgctggatttgatttgatatttgtc  15864000                                                                                           <---------                                                                                        -------------                                                                                     ------>ZmHOX2a(2)                     <------ZmHOX2a(1)                                              --------->GLK1(1)                    ----------->GT1                                                 <---------GLK1(1)                    <----------ID1           ------->TEIL                           <------ZmHOX2a(2)                   ----------->GT1        <---------ATHB12                         <---------ARR14(3)             --------->HSFB2a(2)      --------->ZAT18               ---------->DOF2<---------ARR11(3)             <---------HSFB2a(2) <------ZmHOX2a(1)              <---------ANAC46   --------->ARR11(3) ---->ID1   <-----------------AGL1--------->ARR14(2)         --------->ALFIN1--------->CCA1(2)   gaaattgccctgtttacagaagaggaaaaatggcaggatgtgcaatgaatcttcagttctcaagtgttgtgaaagtgagaaacgagatctcttcttttgg  15864100                                                                                   ---------->DOF2                                                                                --------->ANAC58                                                                                <------MYB46(1)                                                                                --------->ANAC58                                                                                <------MYB83                                                                               --------->MYB46(2)                                                                               --------->MYB59                                                                      <---------MYB46(3)                                                 <---------ANAC58    <---------AtMYB61                                                 <---------ANAC58    --------->ALFIN1                                           ---------->DOF2 --------->LBD16    <--------P                                          --------->YAB1  <---------ANAC46   <---------MYB52(1)    <-                                         <---------ATHB12 <---------ANAC58 <---------TOE1(3)       <- -DOF2                             --------->ANAC58       <---------ANAC58 <---------TOE2(3)       <- -->AGL15    <----------DOF2       --------->ANAC58      <---------LBD16  <-----------RAV1(2)  <-----   gatttgtaatcgagactttgtatttagagatttagccaaggcaatgaaagtgcctgttttgcggattagaggtggttcaggtaggcaaaggtcgaggctt  15864200  Previous    Next  AGI:  At2g37840.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53930.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53930.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15712.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 15858881    to: 15863379    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g37860.1    Description:  LCD1 (LOWER CELL DENSITY 1). similar to RER1 (RETICULATA-RELATED 1) [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15721.1) Range:  from: 15863710    to: 15865998    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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