Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <-----------GT1                      ------>ZmHOX2a(1)                                         <---------ICU4                         --------->TOE2(3)                               <---------TOE2(3)--------->At5g28300         <---------At4g35610                     --------->TOE2(3)  --------->ICU4                  --------->TOE1(3)          <-                   <---------YAB1  ----------->GT1--------->MYB52(1)  <---------TOE1(3)            --   ttcaactcaaaactcgacattttcattaaaactaatgtagtcaatattacagtaactgatatacacatttctaagcttagctccttaaataccataagtc  15782100                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                   ----------------->AGL1                                                                               ======================                                                                               <----------DOF2   ----                                    --------->ANAC58                     <-----------GT1       <-----               ----------->RAV1(1)  --------->ANAC58                     <---------GLK1(1)     <----- --------At4g35610                 --------->DAG2                  --------->ATHB12<---------ANAC58<- ------->At4g35610 ---------->DOF2---------->DOF2     --------->YAB1 <---------WOX13(1)     <--------   gagctcaaaatgtagacccacaaaagccttatctaataaagcaataaactttgtaatcagagggaagaaagattgatacccctttgcgagaattgggacg  15782200                       <---------ANAC58                       --------->O2                       <---------O2                       <---------TGA1a                       <---------ANAC58                       <---------ANAC46                       <---------bZIP60(2)          <---------O2 --------->TGA1a          --------->O2 ==============================MYC_MYB          --------->ANAC58          --------->ANAC58          =======================bZIP_bZIP          ===============================bZIP_DOF          <---------TGA1a          --------->TGA1a     <----------DOF2     <---------At4g35610      --------------------->WRI1     --------->ZAT2    ==================bZIP_DOF  --------->MYB52(1)     <---------ZAT2 --------->bZIP60(1)           --------->MYB52(1)     --------->At4g35610  <XXXXXXXXXXXXXXXXXXXXMIR3440B-3P <---------ZAT14 --------->At4g35610<---------bZIP60(1)      ------->GAMYB <---------REM1(2) --------->ZAT2  ----------->HVH21          --------->MYB46(3) ===================bZIP_DOF  ------>ZmHOX2a(1) --------->MYB46(3) ----->ALFIN1  --------->At4g35610          <---------MYB55(2)  --------->At4g35610 ----TOE2(1)   <---------At4g35610          <---------MYB52(2)  --------->ZAT2   <-----------GT1 ----TOE1(1)  <---------MYB46(3)          --------->MYB52(1)    <---------ZAT2<---------ICU4 -----ZmHOX2a(1) ----------->TGA1        --------->TOE1(2) --------->ZAT14   --------->ICU4 --ID1    ===========================================MYC_MYB   <-----------RAV1(1)               ----   aggagctagctcacgtctggtgacgacgtgtcctttgttcaatccaacgaacaaaccggtcttcactgctggagttgtcatttttacctgcaattactca  15782300                                                                                         --------->ZAT14                                                                                         <---------ZAT14                                                                                  <---------CCA1(2)                                                  <---------DOF5.7(2)          <---------YAB1                                                  --------->MYB52(1)        --------->GLK1(2)   <-------TEIL                                 --------->At5g28300        <---------GLK1(2)  --------->CCA1(2)                             --------->DOF5.7(2)        --------->ARR14(2) <---------GLK1(2)                             ------->GAMYB               <---------ARR14(2) ------>DOF2        <---------TOE2(3)       --------->MYB52(1)           ----------->ARR10          -   aaagattcacagagactaagttaagaaatcgattttgaaatctaaacaacggtaacgaagatgagagcgtttgatcagattctcatacctctgcaatgga  15782400                --------->MYB52(1)             --------->ANAC46         --------->At4g35610      <---------At4g35610      --------->At4g35610                                                              <------------CBF     --------->DEAR3(1)                              --------->ANAC58               ------------>CBF    --------->ATERF1(1)                              <----------ID1                <-----------------AGL1    --------->RAP2.3(1)                              --------->ANAC58             <-----------GT1    --------->MYB46(3)                              *TSS                          <<<<<<<<<GT-1   <---------At4g35610                    --------->AHL20(2)                 <---------ARR11(3)   --------->At4g35610                  <----------DOF2                   ----------->RAV1(1)   ----- -------->At4g35610                     <---------DAG2    ---------->DOF2--------->REM1(1)      <----   gaagcagccgctgctacacaacgatttttggaaaaaatggaactttatatatgaaacgacaaaagacaaaaccctacaacatattaaccaattgggccta  15782500                         --------->AHL20(2)                         <---------ARR11(3)                         --------->AHL20(1)                         --------->ARR11(3)             <---------AHL20(2)            <---------AHL20(1)            --------->AHL20(2)            <---------AHL20(2)            --------->AHL20(1)         --------->AHL20(2)         <---------AHL20(2)         --------->AHL20(1)      ------------>CBF        <---------AHL20(2)       ------>ZmHOX2a(2)        <---------At4g35610        --------->AHL20(2) <------------CBF              <---------ARR14(2)      --------->YAB1     <---------AHL20(1)              --------->ARR14(2)                         < ---->ARR14(2)           <---------AHL20(2)              ------->TEIL   ---------->DOF2         <---- -----ARR14(2)      ------------>CBF<------------CBF    <---------CCA1(2)             <---------AHL20(2)   tttgctaaaaataatttaatggcccaatatattgatccaattgaaacttaaaacatttgtatctgatacaggcccaaagctatcttgtttaataagacat  15782600      <---------ANAC55(2)      <---------ANAC46    --------->MYB52(1)                                                     ------>ZmHOX2a(2) --------->ANAC46                                                         <------ZmHOX2a(2)       <-- --------->ANAC58                                                        <---------AGP1     --------- --------->ANAC55(1)          <-----------GT1                            --------->ARR14(2) <-------- --------->ANAC55(2)  ------->GAMYB                               <------MYB46(1)           --------- <---------ANAC55(2) --------->MYB46(3)                           <------MYB83  --------->YAB1    === --------->ANAC58  --------->MYB52(1)                            --------->MYB59-------->HAHB4  ----- -------TEIL    --------->ANAC58       ----------->GT1--------->YAB1     <---------ARR14(2)--------->GLK1(1) -----YAB1      --------->ANAC58    <----------DOF2  <---------YAB1     <---------CCA1(2)  <---------GLK1(1)   gatacgtaacgtatagctaagtaacagacaaattacaactttggttatatgcattatcaaaatcaatttggttcggatctaataatacaaacgatatctt  15782700     --------->MYB52(1)   <-----------RAV1(2)    --------->YAB1                                               <-----------GT1 ---------RAV1(1)        <---------ATHB12                                         <---------AHL20(1) >ARR11(3)       <---------ARR14(2)                 <---------ANAC58              --------->AHL20(1) -ARR11(3)       --------->ARR14(2)  <---------ARR14(2)   <---------AHL20(2)      --------->ARR11(3) >ARR14(2)  <------ZmHOX2a(1)        --------->ARR14(2)   --------->AHL20(2)      <---------ARR11(3) ==============RAV     --------->WOX13(1)           <---------ANAC58        --------->AtLEC2     ---- ------>RAV1(2)  <---------MYB52(1)  ------->TEIL <-----------GT1      <---------ARR11(3)      <-----   ctgtggcagacggaggaccgatattcaatcatgtatacgaatttgcgaaattttacttgtttaatttgttgaagttctatgcaaaatattgactatataa  15782800                   --------->ARR14(2)                                                      --------->ZAT18                   <---------ARR14(2)                                                      --------->At4g35610                   --------->MYB52(1)                                                --------->GLK1(2)                  <---------GLK1(1)                                           <---------WOX13(1)           <---------REM1(1)                                               --------->AHL20(2)         <------MYB46(1)        <---------AHL20(2)                         <---------AHL20(2)         <------MYB83          --------->AHL20(2)                         <---------AHL20(1)  <------  --------->YAB1<---------ANAC58--------->AHL20(2)                        <---------AHL20(2)  ------- ----->MYB46(3) <---------ANAC58<---------ATHB51                          --------->AHL20(2) -------- ------GT1 <-----------RAV1(1) <---------AHL20(1) --------->AtLEC2    <---------AHL20(2)   <---------ZAT14   ccactgatatttggtgttgcatatcggtagcaaaataattctttggtcttccatgaaaaaccaagtttttgtataatttaattgaagaatgtgtgcagca  15782900                                                                                      <---------ICU4                 <---------AHL20(2)                                                   --------->YAB1          --------->ANAC58                                                           <---------YAB1          --------->ANAC58<-----------GT1                                          --------->YAB1  -- ---At4g35610   <---------AHL20(2)      <----------DOF2   --------->TOE1(3)<---------ZAT2      <----- -->At4g35610   --------->AHL20(2) <---------AHL20(2)     --------->YAB1---------->DOF2     <-------- --->RAV1(1)<---------ARR11(3) <---------CCA1(2)          --------->TOE2(3)--------->ZAT2--------->YAB1   aaactccgtctcaagaaatttaatctatttcccatattttttctttggtgaatgagaaaaccataacgtttcattcaagctggaatcataataacaataa  15783000  Previous    Next  AGI:  At2g37600.1    Description:  60S ribosomal protein L36 (RPL36A). Identical to 60S ribosomal protein L36-1 (RPL36A) [Arabidopsis Thaliana] (GB:O80929); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.2); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.3); similar to unknown [Populus trichocarpa] (GB:ABK94139.1); contains InterPro domain Ribosomal protein L36e; (InterPro:IPR000509) Range:  from: 15781323    to: 15782452    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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