Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------AHL20(2)                                                                            --------->AHL20(2)                                                                    --------->GLK1(1)          --------->MYB46(3)                                       --------->ARR11(3) -------->At5g28300                                                <---------ARR11(3) ----->At4g35610                                           --------->HSFB2a(2) ----->ZAT2 --------->ZAT2   --------->ANAC58              <---------HSFB2a(2) ------ZAT2 --------->At4g35610             <----------DOF2--------->HSFC1(1) ------At4g35610             --------->ANAC46              <---------HSFC1(1)<---------AHL20(2) ---At4g35610                --------->ANAC58 <---------YAB1   ---------->DOF2   gctgtaactccaccagctatctaaacaaaacactcaaattttcagactttgatagcaacttctcgaaaagatttctaattttatatgcaattcaaaacct  15749500                                                                 <-------GAMYB                                                                --------->MYB52(2)                                                                <---------MYB46(3)                                                                --------->MYB46(2)                                                        ------>ZmHOX2a(1)                                                        --------->HSFB2a(2)                                                     ------>NtERF2                                            <---------LBD16     --------->MYB111(2)                                    <---------MYB52(1)  <---------HSFB2a(2)                                <---------At4g35610 --------->DEAR3(1)                                --------->At4g35610--------->ATERF1(1)                               --------->DEAR3(1) ------>NtERF2 --------->MYB111(1)                              <------NtERF2 --------------->AtSPL3                              --------->RAP2.3(1) <---------ATERF1(1)          --------->ZAT6                             <---------At4g35610 --------->ANAC58<---------At4g35610                             ------>NtERF2 --------->MYB52(1)   --------->MYB55(2)                             <---------ATERF1(1)--------->SPL7--------->At5g28300                            --------->ARR14(2)----------->HVH21<---------MYB55(1)             <---------TOE2(3)--------->ATERF1(1)--------->ANAC58--------->At4g35610            -----    ----------->HVH21       <---------ARR14(2)<---------SPL7  <---------MYB52(1)   --------->YAB1 ---  <---------AtLEC2    <---------GLK1(1)   <-----------GT1----------->HVH21     <---------ALFIN1<-----   gtttccatgacccttgaggtagagaaatcggagccgctggtatgttaccggacgcctcctcgacggtagttgccactgcgaacactcttaattctctccg  15749600                                                                      --------->ANAC46                                                                      --------->ANAC58                                                                   --------->ZAT18                                                                   <---------ZAT18                                                              ---------->DOF2                                                            <------NtERF2                                                           ------>NtERF2        --------->ANAC46                                  <----------ID1   --------->ANAC46                       <----------DOF2 --------->ETT(2)        ---------->DOF2 ---->LBD16               --------->GLK1(2)         --------->ATHB12  --------->ANAC58 ------>REM1(2)      <---------TOE2(3) <-----------GT1    <---------ETT(2)---------->DOF2          <- ----ANAC46       <---------MYB52(1)  <-----------GT1 <---------WOX13(1)--------->ANAC46           --   tgaagacaccacaaaactctgttaagaaaatccaaagttttaaacttttcttcttaattggcgacaaagcacacacaaaagagataaagaatgagagaag  15749700                                   <-------TEIL                                  --------->CCA1(2)                              --------->DEAR3(1)                                  --------->ARR14(1)                          ------->GAMYB                                 --------->ARR14(2)                          --------->MYB46(3)               --------->CCA1(2) <---------ARR14(2)                         ------>MYB46(1)         <------NtERF2       ---------->DOF2                                ------>MYB83        ------>NtERF2<------ZmHOX2a(1)                            ----------->RAV1(2)    ------------ --------ARR11(3)  <---------TOE2(3)                              --------->At4g35610  --------->ATHB12 ------->ARR11(3)--------->ICU4  --------->ARR11(1)           ------->TEIL--------->AtMYB61    <-----   agaccttaggcgcgaagaaatgaggaagcttgaaagatacgaagtgagtatgagaacaagaatgcatcttctgagaccaatcgccgaattgattgtactt  15749800                                         <----------DOF2                             <--------ATHB1                                         --------->At5g28300                             --------->ATHB12                              ---------->DOF2                            <---------YAB1                                <------ZmHOX2a(1)                            --------->ICU4                           <---------STY1(1)--------->MYB52(1) --->AtSPL8   --------->TOE2(3)    <---------YAB1           --------->TOE2(3)--------->ANAC58       < -----DOF2    --------->TOE1(3)<---------WOX13(1)           --------->TOE1(3)--------->ANAC58      <-   ttgtctgaatatcaaaccttaagttacagaatgattgattatacttttgtctgaaaatcaaaccttaaaccctagaggaaagtcacagtaacagagaaaa  15749900                                                                          <------------CBF                 <------NtERF2                                          <---------AHL20(2)          <-------GAMYB                                            <---------YAB1         <---------ANAC58                                        <---------ICU4    <---------ANAC58         <---------DEAR3(1)                                     <---------YAB1     <---------ANAC46         <---------ANAC58                             <----------DOF2   --------->AHL20(2)       <---------ANAC46                              <---------ANAC46   <---------AHL20(1)    <---------MYB52(1)            <---------YAB1     <---------ANAC58   --------->AHL20(1)  <-----------RAV1(1)           ----------->GT1      <---------ANAC58<---------AHL20(2) ---------->DOF2 ---------At5g28300       ---------->DOF2           ------>NtERF2<--------HAHB4    <---------ANAC58 ----------GT1  *TSS---------->DOF2       --------->TOE2(3)     --------->ICU4   <---------ANAC46   ttcactgttgggcgttggcagagaaagagaaaggctgtgattagcctaaaacgctgcgttttggtcattattattttattgttttgtgtgcaaagcgttt  15750000                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                  --------->ANAC55(2)                                                                  <---------ANAC55(2)                                                                  <------MYB46(1)                                                                  <------MYB83                     --                                                                  ----------->GT1                  <-                                                                 --------->MYB111(1)            -----                                                                 --------->MYB46(2)             <----                                                                <---------MYB55(1)             ------                                                               <---------MYB52(1)              <-----                                                               <<<<<<<<<MYB98                  ------                                                             --------->MYB52(2)                ------                                  ---------->DOF2            <---------MYB46(3)               <------         --------->TOE2(2)   ----------->GT1               <---------MYB52(1)                 -------     <---------AHL20(2)     --------->DAG2               --------->MYB52(2)<---------YAB1  <---------WOX13(1)    --------->AHL20(2)     ---------->DOF2     <---------MYB46(3)--------->MYB59        <---------YAB1   ttgttatttaatctgcgtttgtaatttgttaaagtgaaaagagaatgagttgttgttgttcgtttgttaggtaacttgttattgcatcatatgatagata  15750100                                                       <---------YAB1 ------->HSFB2a(2)                                    <-----------GT1 --------HSFB2a(2)                                <---------AHL20(2) ---->ARR11(3)                                    --------->AHL20(2) -----ARR11(3)                                   --------->ICU4 --->GLK1(1)                                  --------->AHL20(2) ----GLK1(1)              <---------ARR14(2)  <---------ARR11(3)                                  --- --->CCA1(1)              --------->ARR14(2)--------->ANAC58                                      --- --->RVE1(1)             <------ZmHOX2a(1)  --------->ANAC58                                    ----- ---ARR11(3)   <---------TOE1(3)            --------->ANAC46             --------->MYB111(1) <------- -->ARR11(3)   <---------TOE2(3) <----------DOF2 <---------AHL20(2)      --------->MYB111(2) --------   tctcgaaaacataagttaaggtccaaaggatttgtcttttggctccaagaaattattttcatttcatagcataagtagttggattttgttcatttacacc  15750200              <---------ANAC46              <-------GAMYB--------->ARR11(1)              <---------ANAC58              <---------ANAC58             --------->MYB52(2)             --------->MYB55(2)                                   <---------RAP2.6(3)    <---------MYB46(3)     <---------GLK1(2)                <---------At4g35610  <---------MYB52(1)       <---------ARR14(2)        <-----------RAV1(1)                    <------ZmHOX2a(2) --->MYB46(1)<------MYB83  --------->ARR14(2)    --------->ARR14(2)                        <---------ARR11(3) --->MYB83   <------MYB46(1)--------->ARR14(1)   <---------ARR14(2)                       <------ZmHOX2a(1) ---->AtMYB61<---------MYB46(3)    <------ZmHOX2a(1) ------>ZmHOX2a(1)           <---------ARR11(3) ----GT1    <---------AtMYB61<-------TEIL <------NtERF2     --------->At4g35610  --------->ARR11(3) < ->ANAC46<-----------RAV1(1)--------->GLK1(2)  <---------MYB46(3)--------->RAP2.6(2)    <---------TOE1(2)   atccgatggttttgttggttgtgaaaccagattcggaggaaggccgaagcggttcctgttgcagaggccgtcttggttctctaggtcttgcaggatcaac  15750300            --------->ORA47(1)           --------->DEAR3(1)           ------->GAMYB          <------------AtMYB77          --------->DEAR3(2)          --------->MYB46(3)         ------>MYB46(1)         ------>MYB83         -------->P        ------>MYB46(1)        ------>MYB83                                                                               <-        --------->MYB52(1)                   <----------DOF2             <-----------HVH21       ----      <---------MYB59                       <---------ANAC58        <---------ANAC58            <----      --------->MYB46(3)     <-------TEIL   <---------ANAC58        <---------ANAC58           <-----     --------->ANAC46 <----------DOF2  <---------ANAC58        <---------MYB46(3)              ------   <-----------GT1 --------->ARR11(3)  <---------ANAC58        <-----------RAV1(1) --------->AtMYB61< ---------ICU4     <---------ARR11(3)------>NtERF2    ------->TEIL  <---------ANAC46       <---------   aaaaattacccaaccgtccaagaactttgcattcatctctgccttggctttctctgcatcttcaattgttgcatatgtcacaaaaccaaaaccctttgat  15750400  Previous    Next  AGI:  At2g37500.1    Description:  arginine biosynthesis protein ArgJ family. similar to unnamed protein product [Vitis vinifera] (GB:CAO18037.1); contains InterPro domain Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); contains InterPro domain Arginine biosynthesis protein ArgJ; (InterPro:IPR002813) Range:  from: 15746861    to: 15749916    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g37510.1    Description:  RNA-binding protein, putative. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G54580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18036.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 15750070    to: 15751619    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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