Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            <--------                                                                                           <---------GLK1(1) ------->YAB1       --------->At4g35610                                         --------->YAB1 -------ATHB12      <---------At4g35610                                       <---------WOX13(1)----- --ARR11(3)      ---------->DOF2    --------->At4g35610             --------->ATHB12       --------->GLK1(1)   ataactatgttttcatgtttaaagctgaagatggtagcaactgtagaatgctagagattgttcatgttcttcattgtctcattgatcacatggagttcct  15675800                                                   <----------DOF2                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                 <---------RVE1(1)                                                --------->ARR11(3)                                                <---------ARR11(3)                                                --------->AGP1                                                --------->ARR14(2)                                                --------->ARR14(3)                                                <---------AGP1                                                <---------ARR14(2)                                                <---------ARR14(3)                                               <---------CCA1(2)                                           <------ZmHOX2a(2)                                          --------->AGP1   --------->YAB1                                          --------->ARR11(3)                     ------->TEIL     <---------LBD16                      --------->ARR14(2)                <----------DOF2 >ARR14(2)                                <---------ARR11(3)               <---------ANAC58 -ARR14(2)                                <---------ARR14(2)               <---------ANAC58 ->ZmHOX2a(1)                    <---------ZAT18<-----------ARR10<------ZmHOX2a(2)               ----   ctaatattcagggttctctctcattagttttatagtgcataccagatccagatcttttctataatggatcaagttttgctttgaacgttttcaacataac  15675900                                                                   <-----------RAV1(2)                                                                <-----------GT1                                                            -------->HAHB4                                                            <--------ATHB1                                                            --------->YAB1                                                            <---------ICU4                                                            <--------HAHB4                                                            --------->ATHB51                                                           <---------YAB1                                                           --------->AHL20(2)                                                           <---------ATHB51                                                           --------->ICU4                                                         --------->YAB1                    --------->AHL20(2)                  --------->AHL20(2)                          -            ---------->DOF2                             <---------AHL20(2)                         --          --------->YAB1                               --------->AHL20(2)              <---------At4g35610        <---------TOE2(3)                              --------->AHL20(1)              --------->At4g35610     <---------YAB1 <---------AHL20(2)                 <---------AHL20(1)             ------->TEIL<-- ----->TOE2(3)    <----------DOF2  ----------->GT1     <---------AHL20(2)         ------->TEIL   <---   ctctattactaatgaaaagactttaatttgtatagttgagtaatataaacacactaatttaataattaaccaggtaatgaaatgaatgtagctgtataat  15676000                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                 --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                                 --------->YAB1                                                                              -------->HAHB4                            <---------bZIP60(1)                               <---------ICU4                            --------->TGA2(1)                                 --------->YAB1                            <---------ANAC55(2)                               <--------HAHB4                            <---------ANAC46                                  --------->ATHB51                            --------->ANAC55(2)                               <--------ATHB1                            --------->bZIP60(1)                              <---------ATHB51 -------                            <---------TGA2(1)             --------->YAB1     <---------YAB1<---------TOE1(3)         ------->TEIL      ----------->STF1         --------->ANAC55(1)      --------->ICU4<---------TOE2(3)       --------->ZAT18    <---------TGA2(2)         --------->ANAC58         --------->AHL20(2)<----- -------->At5g28300      ----------->TGA1           --------->ANAC58      >>>>>>>>>GT-1    ---------- --------->GT1           ----------->HVH21          --------->ANAC46   <---------MYB46(3)  <--------- ---------------------TaNAC69(2)                    --------->bZIP60(2)----------->GT1     ---------- ------LBD16         <---------------AGL15        <---------ALFIN1  <----------DOF2     <---------AHL20(2)   gcggtaaaatgcaccaagagtttctctatgacgtaatgtgaagttgagaaacacacgccatcaaaattttctttggttaataattaaaattttaaggtac  15676100                                              <------ZmHOX2a(1)                                       <--------HAHB4                                       <---------ICU4                                      <---------YAB1    <---------AtLEC2                --------->YAB1 -->CCA1(2)               <---------ZAT14   <---------TOE2(3) --TEIL   --------->AHL20(2)       <-------TEIL                                        <-----------GT1 ----->AtSPL8             --------->ZAT14   <---------TOE1(3)         ----------->RAV1(2) ------AtSPL8         <-----------GT1 --------->ICU4        ---------->DOF2          <----------TaMYB80 ----->AtSPL3        --------->AHL20(2)--------->ATHB51    <------ZmHOX2a(1)  ------>ZmHOX2a(1)   aagtttgcacgattaattcaaaatttactacacaagattcataattaaggaatcgaatataggaaagtgtccaactggtcctctcttatatacccttctc  15676200                 *TSS              <---------At4g35610              --------->At4g35610                                       ----------->HVH21            --------->YAB1                                             ------>ZmHOX2a(2)        <---------ALFIN1                                              --------->At4g35610       <---------ZAT18                   <---------ANAC58             <---------At4g35610       --------->ZAT14             --------->DAG2                    <---------ARR14(2)       <---------ZAT14            ---------->DOF2                    --------->ARR14(2)       --------->ZAT18 ------>NtERF2     <---------ANAC46            ------->TEIL     --------->ANAC46 <----------ID1     <---------ANAC58            <---------AGP1                 <   cactaataccgcactcagaagacgacgacaaaacaaaaaagttgcgagagacagagagaaacagagacatggatctgaaatgggatgattttttcaacga  15676300                                                ------>NtERF2                                              --------->RAP2.3(1)                                              --------->ATERF1(1)                                              --------->DEAR4(2)                                             <---------ERF1                                             <---------DEAR4(2)                                             <---------RAP2.3(1)                                             <---------RRTF1(1)                                             <---------ATERF1(1)                                             ------>NtERF2                                             <---------RAP2.6(1)                                             <---------ORA47(2)                                            <---------RAP2.3(3)                                            --------->ALFIN1                                            <---------RRTF1(3)                                            <---------DEAR3(1)                                            <---------RRTF1(2)                                            --------->ATERF1(2)                                            <---------RAP2.3(2)                                            --------->DEAR3(1)                                            <---------ATERF1(2)                                           <---------ABI4(1)                                           --------->ATERF1(1)                                           <------NtERF2                                           --------->RAP2.3(1)                                          <---------RAP2.3(1)                                          <---------ATERF1(1)                                          <---------DEAR4(2)                                         <---------DEAR3(1)                                        <---------At4g35610           --------->At5g28300                                        --------->ZAT2  --------->ALFIN1                                        <---------ZAT2  <---------DEAR3(1)                                        --------->At4g35610         <---------ANAC46                                        --------->ATERF1(1)   <----------DOF2                                   --------->ANAC58     <---------AtMYB61                                   --------->ANAC58 ------->PIF5    <---------DEAR3(1)                      ---------->DOF2   <------NtERF2--------->ALFIN1 <------NtERF2             -----                    --------->HSFB2a(2)--------->MYB52(1)<---------MYB46(3)                <---------ARR14(2)            ------>ZmHOX2a(2)   <---------REM1(1)   <-------PIF5    <---------DREB2C(2)    --------->ARR14(2)        ----------->HVH21    <---------AtMYB61<------NtERF2  <---------ANAC58   --------->YAB1  ----- ---------YAB1      <---------HSFB2a(2)<---------ATERF1(1)   <---------ANAC58<----------DOF2  <------   ttacgaatggctgatcgtgtttctgaaaggtatggtgaagccagcggcggcgctcgtggtggtgcttttggcggtgattctttcatactcgcagaaccta  15676400                                  ------>ZmHOX2a(2)       <------ZmHOX2a(1)         <------ZmHOX2a(2)       ==================================HOX2a_HOX2a       =================================HOX2a_HOX2a      ----------->GT1           --------->ARR14(2)          --------->GLK1(1) ->MYB46(1)                   --------->LBD16              <---------ARR14(2) <----------DOF2 ->MYB83                     <---------HSFB2a(2)           --------->ARR14(2) --------->TOE2(3) ---MYB59                    --------->HSFB2a(2)    <---------MYB52(1) <---------At4g35610    <------   tctttggaaggagaaatgatatactctgtttcccgatcgtttcttcaactctctgttatcggatttgttcttcagttcatctttaaccaagagaactcag  15676500                  <---------------AGL15                <---------CCA1(2)                   <---------At4g35610               ------->TEIL                        <-----------RAV1(1)               <---------ARR14(2)                 ------>ZmHOX2a(2)               <---------ARR11(1)                <---------GLK1(1)               <-----------ARR10                 --------->GLK1(1)               --------->ARR14(2)                <------ZmHOX2a(2)              <---------ARR14(1)                --------->ARR14(3)            <---------ANAC46                    --------->GLK1(2)            <---------ANAC55(2)                 <---------AGP1            --------->ANAC55(2)                 <---------ARR14(3)           <----------DOF2            <---------ANAC58                    <-----------ARR10       <---------AHL20(2)            <---------ANAC55(1)                 <---------ARR11(3)      -------->HAHB4            <---------ANAC58                    --------->ARR14(2)      <---------ICU4        <---------ANAC58                        <---------ARR14(2)     --------->ICU4        <---------ANAC58                    <---------LBD16  <---------MYB52(1)  <---------AHL20(2)       <---------ICU4                 --------->YAB1--------->At4g35610<---------ATHB51      <---------YAB1         --------->MYB52(2) --------->ARR11(3)  --------->AHL20(2)          <----   <------ZmHOX2a(2)       <--------P<---------ATHB12  <---------ZAT14 <---------YAB1           <----  <---------ARR11(3)       <---------MYB52(1)  <------ZmHOX2a(1)    <---------AHL20(2)     --------->ATHB12 -----RAV1(2) <---------CCA1(2)    --------->WOX13(1)  <---------At4g35610<---------YAB1  --------->ICU4   gctggatcatccttgcgtatctcttcatggttagtttcaatcaaactcaggatctgctgctctgttttttttaattattctttttatttgaaatgatttg  15676600                                                          <-------PIF5                                                          ------->MYC4                                                          ------->PIF5                                                          ------->MYC2                                                          <-------MYC4                                                          ------->MYC3                                                          <-------MYC3                                                          <-------MYC2                                                         <---------ANAC46                                                         --------->PIF3(3)                                                         <---------PIF3(3)                                                         <---------TGA1a                                                   <-------MYC3                                                   <-------PIF4                                                   ------->PIF4                                                   ------->PIF5                                                   <-------MYC4                                                   ------->MYC3                                                   ------->MYC4                                                   <-------PIF5                                                   <-------MYC2                                                   ------->MYC2                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                                  <---------ANAC58                              --------->MYB52(1)  =======================bZIP_DOF                          --------->ZAT6          <---------ANAC58                       --------->ARR14(2)         --------->ANAC58                       <---------ARR14(2)         <---------TGA1a                      <-------GAMYB        <---------ANAC58         <---------ANAC58                      =============================================MYC_MYB                      ======================================MYC_MYB <---------ANAC55(2)                     <---------DEAR3(2)    <---------ANAC58    <---------------AtSPL8                     <---------MYB46(3)  --------->ALFIN1--------->TGA1a                    <---------TOE1(2)   ------->MYC2     ================bZIP_DOF                    <---------TOE2(2)   <-------MYC2     --------->O2                   --------->ATERF1(1)  --------->TOE2(2)<<<<<<<<<<HY5                   <---------LBD16      ------->MYC3  ---------------->PIF3(2)               --------                   <------NtERF2    <---------WRKY12 <-----------HVH21                       ------>NtERF2                  ------------>AtMYB77  <-------MYC3----------->HVH21                       ---------                  =================================================MYC_MYB                  ---------                  ------>NtERF2<---------LBD16    --------->ANAC58  --------->ANAC55(2)<---------ANAC58                  ==========================================MYC_MYB <---------ANAC58   <---------ANAC58                  <---------RAP2.3(1)   --------->TOE1(2)<---------O2                <------ZmHOX2a(2)                 <---------DEAR3(1) <---------WRKY38(1)<---------ALFIN1    --------->LBD16  <--------                 <---------ETT(2)  --------->SPL7 --------->TGA1a  <-------TEIL <-----------GT1                 --------->ETT(2)--------->LBD16 ------------>OsbHLH66     <------NtERF2   <---------ANAC46 --MYB46(1)    <-----------HVH21<---------ANAC46 <-------TEIL ---------->DOF2<---------GLK1(2)<------NtERF2 --MYB83      <-----------RAV1(1)<---------SPL7 <------------OsbHLH66    <---------LBD16   <---------LBD16   gtttccgaacaggtctctgtcgccggttacactgccggacaacgtgcgaggcacgtgccacgtggaaagtacgtggccggattatcgatccttgccggga  15676700  Previous    Next  AGI:  At2g37320.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G24000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18069.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 15674287    to: 15675930    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g37330.1    Description:  ALS3 (ALUMINUM SENSITIVE 3). similar to unnamed protein product [Vitis vinifera] (GB:CAO18071.1); contains InterPro domain Conserved hypothetical protein CHP00245 (InterPro:IPR005226) Range:  from: 15676217    to: 15677266    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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