Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         ------>ZmHOX2a(2)                                       ===========================HOX2a_HOX2a                                      ============================HOX2a_HOX2a                                      --------->CCA1(2)                                     --------->ARR14(2)                                     <---------ARR11(3)                                     --------->ARR11(3)                                     <---------ARR14(2)                                     --------->AGP1                           --------->YAB1                                              ---------->DOF2                          <---------YAB1                                         --------->ANAC46                         --------->AHL20(2)                                      --------->ANAC58   <                    --------->ICU4 ----------->ARR10                      <---------AHL20(2)      <--        --------->ZAT14 --------->YAB1<------ZmHOX2a(2)                   <---------YAB1--------->DAG2        --------->REM1(2)<---------AHL20(2)                     <---------YAB1   --------->ANAC58 --- >ANAC46<---------ZAT14<---------YAB1<---------AGP1        <------ZmHOX2a(1)   <-----------GT1<------   tgggtttcagtgaagacggacaaagattataatagctaagatctagtaagtgactaagtgaggactataatttgatataattcacacaataaagctaatg  15655900                                                                              --------->TGA1a                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                        <---------ICU4                       --------->ARR14(2)                        --------->YAB1                       --------->ARR11(3)                        <--------HAHB4                       <---------ARR11(3)       <---------CCA1(2)--------->ATHB12                     <---------ARR14(2)             <--------     --------->YAB1    <---------ATHB12             --------->YAB1            ==================bZIP_DOF ---------MYB111(1)   ------>MYB46(1)        <---------At4g35610              --------->O2 <---------ARR11(3) ---------GT1         ------>MYB83           --------->At4g35610 ------>ZmHOX2a(1)   ---------->DOF2 ---->TEIL           --------->WOX13(1)--------->YAB1      --------->MYB59    <---------O2 --------->ARR11(3) ---TOE2(3)      <-----------GT1    --------->WOX13(1)     ----------->ARR10  <---------TGA1a   taactactcatatcaatataaaccaatcatttcaatgtctatcatacagctaaataagaattagatcctagacaattctcaagtgtctaaagagatattc  15656000                                --------->TGA2(2)                     <---------ARR14(2)                     --------->KAN4(2)                    <----------TaMYB80                                          <---------MYB46(3)                    <---------KAN4(1)                                         --------->At4g35610                    --------->KAN4(1)                                      <---------ZAT2                   ---------->TaMYB80        --------->MYB52(1) --------->TOE2(3)<-------GAMYB                   <---------KAN4(2) ---------->DOF2          <-----------------AGL1        <--------                 <------ZmHOX2a(1) <---------YAB1             <-----------------AG          ---------           <------MYB46(1)     <-----------TGA1              <-----------GT1  <---------At4g35610           <------MYB83       --------->bZIP60(2)       --------->ARR11(3) <---------At4g35610          <---------AtMYB61   --------->ANAC58          <---------ARR11(3) --------->At4g35610 -RVE1(1) <---------MYB46(3)  --------->ANAC58  <---------MYB46(3)--------->ATHB12    ------->TEIL <-   taagagaagggattggtgaggaatataccgaaacgtcatcaaagctccaacggttgaagagcttaacctcattggtaagctgctgttgaatctcagcgtc  15656100                  --------->ATHB12             ------>NtERF2             <------NtERF2            --------->RAP2.6(2)            ------>NtERF2          --------->ATERF1(1)          <------NtERF2         <---------ATERF1(1)         <---------RAP2.3(1)        <---------DEAR3(1)        --------->ALFIN1       --------->ATERF1(1)      --------->LBD16    --------->At4g35610    <---------At4g35610     <------ZmHOX2a(2)       --------->LBD16    <---------LBD16       <------ZmHOX2a(1)        --------->ANAC46 -At4g35610<---------RAP2.6(2)                     ----------->GT1      ----------->GT1          ---- >At4g35610<---------DEAR3(1)                      <---------ANAC55(2) ------------------------>ANAC81 --------GLK1(1) ----------->HVH21       ----------->GT1    <------ZmHOX2a(1)      <------ZmHOX2a(1)   gatttctgcggaggcggccatgactggaggatcaatagaagattagtaaaaacccgtaaataggaaattagaaaatgaaaaaacaggaatcagagaatgg  15656200                                              <----------DOF2                                             <---------ANAC58                                             <---------ANAC58                                             <---------ANAC46                                            <------NtERF2                                           ------>NtERF2                                          <---------DEAR3(1)                                          <------NtERF2                                         --------->LBD16                                         <---------LBD16                                         ------>NtERF2                                        --------->DEAR3(1)                                  <----------DOF2                                    <---------KAN4(2)                                <------ZmHOX2a(2)                              <---------ATHB12                               --------->ARR14(2)                              --------->ICU4                               --------->ARR11(3)                         --------->ANAC46                               <---------ARR11(3)                         --------->ANAC58                               <---------ARR14(2)      >>>>>>>>>TBF1      --------->ANAC58          *TSS                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->At4g35610   --------->TOE2(3) --->TEIL        --------->ETT(2)------>ZmHOX2a(2)  >>>>>>>>>TBF1    <---------At4g35610   --------->TOE1(3)   acctgaaactctataagtgtcgagagaagtagggatctttagccgcggcttgaagaagaagaagagaaggaagctcaagcaatgaagaataaaccctaaa  15656300                                    <------------CBF                                   --------->ATHB12                                  <---------AHL20(2)                                 <-----------TBP                                 <----------DOF2                                        <------------CBF                         <---------AHL20(2)           <----------DOF2              <-----------------AGL1   <---------ZAT6       --------->AHL20(2)    <-----------RAV1(1)<------------------------ANAC81   <-   aatgagtgttagtaatgttctgtttataaaatgggttttattgggcttatgttgggcttttgtgttttgttttagtttagtttctctccgaattggacac  15656400                                                                                      <----------DOF2                                                        <---------ANAC58     ----------->GT1                                                    <----------DOF2        <-------TEIL                                                    <---------------AGL15 --------->ARR14(1)                                                 <-----------GT1          --------->CCA1(2)                                                <-----------GT1          <---------ARR14(2)                                           <------MYB46(1)               --------->ARR14(2)           <-------GAMYB                   <------MYB83 <---------ANAC58 --------->ARR11(1)     -----     <----------DOF2                      --------->MYB59                --------->ARR11(3) --------- --------MYB52(1)   <---------TOE2(3)     <---------TOE2(3)     <---------ATHB51  <-----------GT1   agtttggctattgggttgtatttatgttgagagactgactagattaggttttatcttttcttggcaatagttgaagatacggttttatcttttgtctaca  15656500                                                                  <-----------GT1                                                    <-----------GT1    <---------YAB1      --------------------->WRI1                  <---------WOX13(1)<---------YAB1    <---------YAB1                          ------>MYB46(1)      <---------AHL20(2)  --------->YAB1                          <---------MYB59        <---------AHL20(1)  <---------ICU4          --------->ARR11(3)------>MYB83         --------->AHL20(2) <---------ATHB12         <---------ARR11(3)-------->P           --------->AHL20(1) ---->TOE2(3)         ---------->DOF2<---------ANAC58     ----------->HVH21 >ETT(2)      <---------AtLEC2       <---------ANAC58   --------->ANAC46                            <   taaatcatcatacgttgcatcgaacaaagttctcaaaatgcttaccaacttgatttacaagtgacattttattattcttaagaacatgaagaatacattc  15656600                                                                                       <---------AHL20(2)                                                           <----------DOF2         <---------------AGL15                                                           <---------DAG2          --------------->AGL15                                                      --------->YAB1              <---------YAB1        --------->YAB1                             --------->WOX13(1)      <---------AHL20(2)        -------->HAHB4                            --------->MYB46(3)       --------->AHL20(2)        <---------ICU4                           ------>MYB46(1)          <---------AHL20(2) --------       <---------YAB1                          ------->GAMYB          --------->ICU4 <---------YAB1       <---------ATHB12          <----------DOF2 ------>MYB83  <---------YAB1   <-----------GT1------       --------->ICU4         <-----------GT1  --------->AtMYB61--------------->AtSPL8--------->YAB1 ----------DOF2           <----------DOF2     --------->MYB46(3)<---------------AtSPL8--------->AHL20(2)   ttctttgtaatgatgaccatacagtcatcttttttcttttctgtctcaaccatccatcatactttattagtactaatttatattactattatatgaaaag  15656700                                        <---------ANAC58                                        <---------ANAC58                                       <-------TEIL                                      --------->ALFIN1                                    <---------ANAC58                                    <---------ANAC58             --------->ANAC46                                    ===========================bZIP_DOF                                    <---------O2          <--------HAHB4                                    <---------ANAC46      --------->ATHB51                                    <---------bZIP60(2)   -------->ATHB1                                    --------->TGA1a       <---------ICU4                                    <---------TGA1a       -------->HAHB4             =================================bZIP_DOF    --------->YAB1    <---------ANAC55(2)          ----------->HVH21       --------->ICU4    --------->ANAC55(2)   --------->RAP2.6(3)            <---------ATHB51    --------->ANAC46     <---------ARR14(2)              <---------YAB1    --------->ANAC58     --------->ARR14(2)            --------->YAB1    --------->ANAC58     --------->MYB52(1)           --------->AHL20(2)    --------->ANAC55(1) --------->RVE1(1)  <---------ANAC46 <---------YAB1 -->DOF2     ---------->DOF2   ===============bZIP_DOF<---------AHL20(2) ----->GT1--------->WOX13(1)   <----------DOF2      <----------DOF2   aaaaacacgcatcaattaagccctaaatatcggctttgacgtgcgtcgtagtgactttaattattacaaggagcatattagcgactagcgactatccaaa  15656800  Previous    Next  AGI:  At2g37270.1    Description:  ATRPS5B (RIBOSOMAL PROTEIN 5B); structural constituent of ribosome. Identical to 40S ribosomal protein S5-1 (RPS5A) [Arabidopsis Thaliana] (GB:Q9ZUT9;GB:Q8L967); similar to ATRPS5A (RIBOSOMAL PROTEIN 5A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G11940.1); similar to ATRPS5A (RIBOSOMAL PROTEIN 5A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G11940.2); similar to 40S ribosomal protein S5 (GB:O65731); contains InterPro domain Ribosomal protein S7, eukaryotic/archaeal; (InterPro:IPR005716); contains InterPro domain Ribosomal protein S7; (InterPro:IPR000235) Range:  from: 15654756    to: 15656300    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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