Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->LBD16                                                                 ------>NtERF2                                                                <---------ATERF1(2)                                                                <---------HSFB2a(2)                                                                <---------ETT(1)                    <                                                                --------->HSFB2a(2)     --------->At4g35610                                                                --------->ANAC46        <---------At4g35610                                                            <---------GLK1(1)           <---------ZAT2                                                          <---------ICU4                --------->ZAT2                                                  ------->GAMYB<---------LBD16 <---------At4g35610  <                                            --------->TOE2(3)<---------ARR14(2)--------->ZAT2<-------                      <---------LBD16       --------->TOE1(3)--------->ARR14(2)--------->At4g35610<--       <---------HSFB2a(2)     --------->TOE2(3)  --------->AtMYB61       ---------->DOF2    --------       --------->HSFB2a(2)     --------->TOE1(3) --------->MYB46(3)<---------ALFIN1   --------->ZAT18   tactttcttctataactcacaaattggggaaaaccctaaatccatacctcaaccatctcaacatttccggcactctcaaagagctgagcgagctgagcac  15643100                                                                             --------->At4g35610                                                                             <------NtERF2                                                                             <---------At4g35610                                                                           <---------WRKY12                                                                          --------->TGA2(2)                                                                         <-----------TGA1                                                                        --------->bZIP60(1)                                                                        <---------TGA2(1)                                                                        <---------bZIP60(1)                                                                        --------->TGA2(1)                                                                        --------->ANAC58                                                                        <---------O2                                                                        --------->TGA1a                                                                        <---------TGA1a                                                                        --------->O2                                                                        --------->ANAC58                                                                        --------->bZIP60(2)                       ------>MYB46(1)                                 <-----------STF1               <---------HSFB2a(1)                                   ----------->HVH21               --------->HSFB2a(1)       --------->ZAT2             --------->DEAR3(2)    --------->TOE2(3)  <---------------------WRI1 --------->ATHB12<------NtERF2  <---------TOE2(3)   --------->MYB52(1) <---------ZAT2         <---------ANAC58 <---------DOF5.7(2) --------->TOE1(2)   <---------At4g35610    <---------DEAR3(1) ---------WRKY38(1)  --------->TOE2(2)   --------->At4g35610    <---------ANAC58 ---------WRKY12    --------->MYB46(3) <-----------RAV1(2)      <---------ANAC46 --ZAT14       <------MYB83          <-----------HVH21         <---------LBD16                     -- ---------HVH21<------MYB46(1)     <---------TOE1(3)      <----------DOF2<-----------HVH21        --- ->ZAT14---------->DOF2------>MYB83<---------TOE2(3)      ========================bZIP_DOF    <------   tgtcaacgttgaaaggaaggttaccaacgaagagtttaaggtcagcagagaaagattgctcttttggcggagcgacgtcagcgaaaccatcttcttccac  15643200                                                              <---------DEAR3(1)                                                             --------->ATERF1(1)                                                             <------NtERF2                                                            <---------ORA47(2)                                                            ------>NtERF2                                                            <---------RAP2.3(1)                                                            <---------ERF1                                                           <---------ANAC46                                                           <---------ATERF1(2)                                                           <---------DEAR3(1)                                                           <---------RRTF1(3)                                                           <---------DREB2C(2)                                                           <---------RRTF1(2)                                                           --------->ATERF1(2)                         <---------ANAC58                  <---------RAP2.3(2)                         <---------ANAC58                  <---------RAP2.6(2)                         <---------ANAC55(2)               <---------RAP2.3(3)        <---------TOE2(3)<---------ANAC46       --------->GLK1(1) ------->TOE1(1)       --------->MYB52(1)      --------->HSFB2a(1) ------>HSFB2a(2)    <-----------HVH21         <---------HSFB2a(1)         --------->MYB52(1) ---ALFIN1     --------->ANAC46        --------->GLK1(2)  <---------LBD16 <---------ARR14(2)    -----   ctcgaactctgaggtaatcgcaacgttacgggcgaagcgagaagcgggagagttccatttggcggcgatggagaaggaaacggagtcggaattgagttta  15643300                                             --------->RAP2.3(1)                                            ------>NtERF2                                          --------->ATERF1(1)                                     <---------HSFB2a(2)                                           --                                  --------->ARR14(2)                                               <-                                  <---------ARR14(2)                                         <-------                                 <------MYB46(1)---------->DOF2                              --------                       --------->MYB52(1)<---------ATERF1(1)   <---------TOE1(3)             --------          <------ZmHOX2a(1)      <------MYB83<------NtERF2 --------->CCA1(2)                 <-------         ----------->GT1      <------NtERF2--------->DEAR3(1)  <---------TOE2(3)            ------->TEIL ----->DOF2   --------->CCA1(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-------GAMYB         --------->CCA1(2)   aaggagagggaaggagataagagggaaacggaggcaggtctggagacgccgaaaggaagagatttagggttgaaggaagagagagcgagagacgaagctg  15643400 --------->RAP2.6(2) ------->At4g35610 --------At4g35610                                      --------->ARR11(3) --At4g35610                               <---------ANAC58                   <-------TEIL ->At4g35610                               <---------ANAC46        ----------->GT1      *TSS  ------- ->ZAT2                              <----------DOF2  <---------YAB1    --------->CCA1(2)    <------- --ZAT2      >>>>>>>>>TBF1  <----------DOF2<---------ANAC58       --------->ALFIN1    <----------DOF2   aagcagccatgggaagaagaagggataaggcttttaggggtttttgggtgaagaagatgattttgagagtggagataagatgcagtgtctttggtattta  15643500                          <----------DOF2                       <---------ARR11(3)               <---------AHL20(2)               <---------AHL20(1)               --------->AHL20(2)                  <---------AHL20(1)               --------->ARR11(3)                  --------->AHL20(2)               --------->AHL20(1)    --------->ARR11(3)             --------->TOE1(3)              --               <---------ARR11(3)    <---------ARR11(3)             --------->TOE2(3)           <----      <---------ATHB12 --------->ARR11(3)          <---------AHL20(2)                        -------- -->ICU4      --------->AHL20(2)    --------->RVE1(1)            <-----------GT1       ------------>CBF ----TBP  --------->AHL20(2)        --------->CCA1(1)    ----------->GT1       <---------AHL20(2)  <-   tggggcaaatgaataaatatattaagttctttgcacaaatatctcaaacttattttattttgtaattttacctcaaactattttttaggctcaatattct  15643600                                                                       <---------AHL20(1)                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                    --------->AHL20(1)                                                                   --------->ATHB51                                                                   <---------AHL20(2)     <---------MYB52(1)        <----------DOF2                    --------->ICU4 ------->GLK1(1)            <---------AHL20(2)            --------->YAB1          <---------TOE1(2) -----YAB1                  <-----------GT1               --------->ATHB12       <---------ANAC58 ->GLK1(2)              <---------AHL20(2)         --------->ANAC46--------->AHL20(2)      ---------- --------GLK1(1)       <---------YAB1         <-----------GT1  <------ZmHOX2a(1) <---------ANAC58   gatttctgttttttttgtaagaatttttattttctttgcaactatttgtttccacataaatgataggaattattttatttttcgcttgtttagtagtaat  15643700                                                                          --------->ARR11(3)                 <-----------HVH21                                        <---------AHL20(1)         <---------AHL20(2)                                               --------->AHL20(1)        <---------AHL20(2)                                                <---------ARR11(3)        --------->AHL20(2)                                      <---------DAG2    --------->AHL20(2)                                       <-----------GT1           --------->DAG2    <---------AHL20(2)         <---------ANAC58              <---------AHL20(2)       ---------->DOF2    <---------AHL20(1)         <---------ANAC58    <---------YAB1        <---------AHL20(2) ->GT1  --------->AHL20(1)     <---------ANAC46 <---------YAB1  <----------DOF2   <---------YAB1  <--   atacaaaaaatttaatacatgtcgcaaattgtttcgttttgcattttagtatgcttattgtatttacttttctaaatattttttgtgataaagttatgtg  15643800                         <---------ANAC58                                                        ----                         <-------GAMYB                                                          <----                         <---------ANAC58                                                       -----                        <------MYB83                                                           ------                        <------MYB46(1)                                                        ------                        <---------MYB46(3)                                                     <-----                       --------->MYB59                                                         <-----                       <---------AtMYB61       --------->ZAT14                                 <-----                   <---------YAB1              <---------ZAT18                                 ------         --------->AHL20(2)       --------->AHL20(2)                                          <------        --------->AHL20(2)        <---------AHL20(2)                    <---------ANAC46 --------->At4g35610       --------------->AGL15 <---------YAB1    <---------ZAT14--------->YAB1      <---------WOX13(1) --------DOF2      <---------ANAC46--------->ATHB12   <---------MYB111(1)      <---------YAB1--------   cttttctcacttaaattagttgtgtttggttgtgattttattgggacagtctactaactacttgtcataatatgaagtgtgatgatagatgagatgagat  15643900  --------->DEAR3(2)               --------->O2                                        >>>>>>>>>>>>>> -->ZmHOX2a(2)                     <---------O2                                        <<<<<<<<<<<<<< --ZmHOX2a(2)                      --------->ANAC55(2)                               --------->MYB46(3) ---->CCA1(2)                      --------->TGA1a                                 --------->MYB52(1) --->ARR11(3)                      --------->ANAC58                      <---------AHL20(1) --->AGP1                          <---------ANAC55(2)                   --------->ARR11(3) ----AGP1                          --------->ANAC58                    ----------->ARR10  --------->MYB52(1) ----ARR11(3)                      <---------TGA1a                   --------->CCA1(2)------->GAMYB ----ARR14(2)                 <---------------AtSPL3          --------->YAB1   <-----------GT1 --->ARR14(2)           --------->ALFIN1                <---------ARR11(3)<---------RVE1(1) ---GLK1(1)           ----------------------->TaNAC69(2)--------->ARR11(3)<---------CCA1(1)         < --->ARR10     <---------AtLEC2    --------->bZIP60(2)  --------->GLK1(2)<---------ARR11(3)      ----   ctggaccgtcgaattttggatggacagtggagatggcacgtctcatgctgaagctaaaaatctatgagaagataagatattttactaacagccaatggaa  15644000  Previous    Next  AGI:  At2g37220.1    Description:  29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative. Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA binding / poly(U) binding [Arabidopsis thaliana] (TAIR:AT3G53460.2); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA binding / poly(U) binding [Arabidopsis thaliana] (TAIR:AT3G53460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18164.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha- Range:  from: 15641604    to: 15643488    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version