Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC58                  ------->GAMYB                                                           ------>ZmHOX2a(2)                 --------->MYB46(3)                                         =======================HOX2a_HOX2a                ------>MYB46(1)       <---------HSFB2a(1)                   ------>ZmHOX2a(2)                ------>MYB83          --------->HSFB2a(1)                  --------->CCA1(2)               ----------->RAV1(1)   --------->GLK1(2)                     ========================HOX2a_HOX2a               --------->MYB52(1)    <-----------ARR10                     <------ZmHOX2a(2)              ------->GAMYB          --------->ARR14(2)         ------>ZmHOX2a(1)        <---------YAB1              --------->AtMYB61      <---------ARR14(2)         ===================HOX2a_HOX2a             <---------MYB52(2)     <---------GLK1(2)           =================================HOX2a_HOX2a             <---------MYB55(2)     --------->ARR14(2)          ==================HOX2a_HOX2a     --------->ANAC46  --------->ANAC58                        --------->TOE1(3)      <---------YAB1  --------->MYB46(3)   --------->ANAC46      <---------ALFIN1  --------->TOE2(3)    --------->YAB1 -- ----DOF2    --------->MYB46(3)   --------->LBD16       <---------ATHB12  <---------AGP1<---------ARR11(3) --HSFB2a(1)--------->ANAC58     <---------HSFB2a(2)   --------->ANAC58   --------->AGP1--------->ARR11(3) ->HSFB2a(1)--------->ANAC46     --------->HSFB2a(2)   --------->ANAC58   --------->ARR11(3)    ----- --ARR10    --------->ANAC58    <---------LBD16        --------->ANAC46   <---------ARR11(3)------>ZmHOX2a(1)   cccatccacagtacaaccaacagacacacaagttcccagaatctccctcactgttccactcaattccttagcaatagatctaggtctcatgatcctagca  15626800                                                                                                   <-                                                                          <----------DOF2          <-       --------->bZIP60(1)                                           ------>NtERF2                 --       --------->bZIP60(2)                                           --------->LBD16              <--       <---------bZIP60(1)       <---------YAB1             <---------CCA1(2)                  ------   <-----------HVH21          <---------MYB52(1)          <---------CCA1(2)                <---------ANAC46 ------->TOE2(3)     --------->ARR11(3)                   ------>ZmHOX2a(1)     --------->ANAC46<---- ---->WOX13(1)       <---------ARR11(3)        <-----------GT1     <---------LBD16      ----------->TGA1   atctcagtcacatcatcaaacgagatgttcccgttatgcttaatgttcttcaccttcttcctatctctctccggctctttcaacgccttgatgacgagtg  15626900                                                              --------->ANAC55(1)                                                              --------->ANAC58                                                              --------->ANAC46                                                              --------->ANAC58                                                              <---------ANAC55(2)                 <-----------HVH21                  ------------>AtMYB77                --------->DREB2C(2)               <----------DOF2                --------->DEAR3(1)     --------->ZAT18   --------->ARR14(2)            --------->MYB46(3)     --------->ARR14(2)   --------->At5g28300                         <            <---------MYB55(2)     <---------ARR14(2)   <-------GAMYB                               -  <---------At4g35610              --------->GLK1(2)<---------WRKY18(1)                             -  --------->At4g35610      ----------->RAV1(2)   ----------------------->TaNAC69(2)        <--------- --------At4g35610    <----------DOF2  --------->ZAT14 <---------MYB46(3)                 <---------ANAC58 --------ZAT2<---------ALFIN1----------->HVH21  --------->At4g35610                       <---------ANAC58 ------->At4g35610<---------MYB52(1)   <---------ZAT14 ----------->GT1          <----------DOF2    <- ---------RAV1(1)<-----------TGA1 <---------GLK1(2)----------->HVH21<---------ICU4  <---------RAP2.6(2) --->ALFIN1 <---------ABI4(2)----------->TGA1 <---------ZAT18 --------->ANAC55(2)  <---------LBD16 -- -----At4g35610 --------->ANAC46  <---------ARR14(2)--------->MYB52(1)------>ZmHOX2a(1)<---------ARR14(2)   ctgctgctgatggaaccaccgtcactttcgcctgacgattctgcactgtgagcttgacggttacacgtaatcctttccattcctttgcggtttctttcgc  15627000                                                                                                    -                                                                                                  ---                                                                                                  ---                                                                                                  ===                                                                                                  ===                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                     ----------------->AGL1                                       <--                                     <-----------------AGL2                                  <-------            ------>ZmHOX2a(2)        <-----------------AGL1                                <---------TOE1(2)           <------ZmHOX2a(2)      --------->ZAT18                                          ----------          <---------ARR14(2)      ----------->HVH21                                        --------->SPL7          --------->ARR11(3)      <---------SPL7                                   --------->ARR14(2)          --------->ARR14(2)   ------>MYB83                                      --------->LBD16  --- ---------ARR11(3)     <---------ANAC58  <----------DOF2                        --------->LBD16  <--- -------->ARR14(2)     <---------ANAC58 <---------GLK1(2)       <---------ZAT2 --------->LBD16  <---- -------->ARR11(3) <---------ANAC58  <-----------------AGL3     --------->ZAT2 <---------LBD16 <----- -DOF2    <---------ARR11(3)   --------->MYB52(1)               --------->At4g35610<---------ARR14(2) --------GLK1(1)   <---------ANAC58------>NtERF2 --------->At4g35610 ------>NtERF2<-----------HVH21<- ------->GLK1(1)<----------DOF2------>MYB46(1)   <---------ZAT2 <---------At4g35610<---------MYB52(1)   gatatcttctccgatcttctttggtgcgagacctagcggaccgattttgggagctagagaactcgctgctccgacttctcccccggttactcggacgtac  15627100         ----------->HVH21      --------->ARR14(2)      <---------ARR11(3)      <---------ARR14(2)      --------->ARR11(3)     ------->GAMYB  <---------DOF5.7(2) <---------WRKY12                <----------DOF2 -------->DOF5.7(2)            <------NtERF2                                             <------NtERF2 ------>O2                    <---------RAP2.3(1)                                        --------->ATERF1(1) ------>TGA1a                 ------>NtERF2                                             <---------ATERF1(1) ==================================bZIP_DOF                                             <---------DEAR4(2) ============MYC_MYB         <---------RAP2.3(3)                                       --------->ALFIN1 ------>ANAC55(1)            <---------RAP2.6(2)                                       <---------DEAR3(1) ------>ANAC46               <---------RAP2.3(2)                             <---------HSFB2a(2) ------>ANAC58               <---------ATERF1(2)                             --------->HSFB2a(2) ------>bZIP60(2)            <---------DEAR3(1)                             ----------------->AGL1 -------O2                   --------->ATERF1(2)                          --------->ARR14(2) --SPL7 ------>ZmHOX2a(2)   <---------LBD16             <---------TOE2(3) <---------ARR14(2) ----->AtSPL3     <------ZmHOX2a(2)                     <---------TOE1(3)--------->HSFB2a(1) ------>ANAC58   --------->ARR14(2)               --------->GLK1(1)      <---------HSFC1(2)       *TSS --------bZIP911(2)------>ZmHOX2a(2)             --------->ARR14(2)      --------->HSFC1(2)  <------- -----ALFIN1 <---------LBD16--------->RAP2.6(3)  <---------ARR14(2)      <---------HSFB2a(1)<-------GAMYB --TEIL<------ZmHOX2a(2)<----------DOF2          <---------GLK1(2)  <------ZmHOX2a(2) <------ZmHOX2a(1) ----------HVH21 <---------ARR14(2)          <---------LBD16        =========================HOX2a_HOX2a   acgtcaacgatctgactcggatccaactttggcggcattgtggatgtctcggattttcaaggtttctacgatcgaagttccgaaacgaggaggcgcttga  15627200                                                                  --------------->AGL15                                                                 <-----------------AGL1                                                                -------->P                                                              ------>ZmHOX2a(2)                                                             <----------TaMYB80                                                             <------ZmHOX2a(2)                                                            --------->ARR14(2)                                                            ------->TEIL                                                            --------->AGP1                                                            <---------ARR14(2)         <---------TOE1(2)         <---------TOE1(3)        <---------ARR11(3)         <---------TOE2(3)         <---------TOE2(3)     --------->ANAC55(2)   --------->At4g35610  ----------->GT1                  <---------ANAC55(2)   --------->GLK1(1)    <---------ZAT6                   --------->ANAC46  --------->ARR11(3)    --------->ALFIN1                <---------LBD16  <---------ARR11(3) <------ZmHOX2a(1)    --------->ANAC46  <-----------ARR10                <------- ---DOF2 <---------TOE2(2)   --------->ICU4 ---------->DOF2 --------->ARR11(3)    --------->YAB1  <--   agaagagctccaaggtttttgaaggagtgtgaaaattagggtttacgaaagagacatttacggatctacccttatgggcttctatcatctatgggctttg  15627300                                                                            --------->LBD16                                           --------->TOE2(3)                --------------------->WRI1      --------------->AtSPL8               <----------DOF2                  ------>ZmHOX2a(1)    --------->ARR14(2)              <------MYB46(1)                       <---------ANAC46    <---------ARR14(2)              <------MYB83                        --------->ARR14(2)    --------->GLK1(2)            <---------MYB52(1)     --------->LBD16 <---------ARR14(2) ---DOF2                    <---------ARR14(2)        <---------LBD16  <---------MYB52(1) ---------GT1               --------->ARR14(2)--------->YAB1      <-----------GT1    ------->TEIL<---   taacccaatctgtacaaattagactactcggttctgttcggtttactttaatattctccggtttagttgaaccgtttcctgaaaatgaatcgtcgtcttc  15627400                                                          ==============HOX2a_HOX2a                                                          ------>ZmHOX2a(2)                                                         ===============HOX2a_HOX2a                                                         --------->At4g35610                                                        <---------ARR14(2)                                                        --------->GLK1(2)                                                        <-----------ARR10                                                        <---------ARR11(3)                                                        --------->ARR14(2)                                                        <---------AGP1                                                        --------->ARR11(3)            <------MYB46(1)                                                   <------NtERF2                      <------MYB83                                                 <---------ANAC46                    --------->MYB59                                                 <---------ANAC58                <------MYB46(1)                                                 <---------ANAC58                <------MYB83                                        =========================HOX2a_HOX2a    <---------MYB46(3)                                        <------ZmHOX2a(1)<------ZmHOX2a(2)     <---------ANAC46                                     <------ZmHOX2a(1) <------ZmHOX2a(1)<---------ARR14(2)       <---------At4g35610           ============================HOX2a_HOX2a   <--------P       <---------ZAT2             --------->At4g35610 ----------->ARR10 --------->ARR14(2) >>>>>>>ZML2      --------->ANAC58      *TSS--------->YAB1  <---------LBD16  <------ZmHOX2a(1)   <---------AtMYB61      --------->ANAC58  <---------ANAC46========================HOX2a_HOX2a   <---------MYB52(1) -------DOF2    <-----------RAV1(1)  ===========================HOX2a_HOX2a <-----------RAV1(1)   tttggggcaagctccttgatgttgttgagtctaatcagaggaggaagaatggcgggaggatctgagaggaagacgatactggtgggtttggttctagctc  15627500                                                                          <---------TOE1(3)                                                                          <---------TOE2(3)                                                                       <----------DOF2                                                                   <---------ZAT18                                                        <---------At4g35610                           <----------DOF2 <-----------GT1----------->HVH21                       <---------TOE2(3)  --------->KAN4(2)     ---------->DOF2                       <---------TOE1(3) --------->YAB1 --------->At4g35610         --------->YAB1   ttgttcttggtatcggtgtttacttaaggctttggactatcgattatactctatcttccgatgacacagagcgcttaaggtttgaataatacttcatttg  15627600         -------->ATHB1         --------->ATHB12         <---------ICU4         --------->YAB1        <---------ATHB12        --------->ICU4                        ---------->DOF2        <---------YAB1               --------->ATHB12                            --------->ARR11(3)     ------------>ATHB5              <---------ICU4                        <---------REM1(1)   <---------MYB52(1)               <---------ATHB12                       <---------YAB1 <---------ANAC46                   --------->ICU4                      --------->ICU4 <---------ANAC58                   <---------YAB1               --------->YAB1  <---------ARR11(3) <---------ANAC58   <---------LBD16<---------TOE2(3) --------->ICU4 <-----------GT1   attccgtttaatcattgtaatttctgggttttcttctaatgatttgctcaaagtattgatttttctgtaataacatgatgaagggtcttctcaatttcag  15627700  Previous    Next  AGI:  At2g37190.1    Description:  60S ribosomal protein L12 (RPL12A). Identical to 60S ribosomal protein L12-1 (RPL12A) [Arabidopsis Thaliana] (GB:P50883;GB:Q9ZQD3); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75443.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) Range:  from: 15626486    to: 15627198    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g37195.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO18156.1) Range:  from: 15627428    to: 15628711    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version