Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ANAC58                                                       --------->ANAC55(2)                           ---------->DOF2             <---------bZIP60(1)                        --------->ANAC58               --------->ANAC58                        --------->ANAC58    <---------ANAC46       <---------YAB1                       --------->DAG2      ---------------------->TaNAC69(1)                 ----------->GT1           <-------TEIL<---------ANAC55(2)                ------>ZmHOX2a(2)        <---------GLK1(2)    <----------DOF2               <------ZmHOX2a(2)   <---------SPL7   ----------->HVH21              <---------ARR14(2)  --------->ANAC55(2)  --------->bZIP60(1)   ---------->DOF2    ---------->DOF2    <---------ARR14(2)  --------->TOE2(3) ----DEAR3(1) --------->ARR14(2)  <---------ANAC55(2)  --------->ANAC46 --------->DAG2 ->LBD16      --------->MYB52(1)  <---------ANAC46  ----------->TGA1   ---------->DOF2 -ANAC46  ------------------------>ANAC81--------->ARR14(2)  <---------DAG2             ----------->GT1   atgagaaaagaagaccgatcggagaaaagcaaagagacgtatggattcgtatagatgacgcaaccttttatgaaaaagaggttttagagagagaaatatg  15615500                                                                                    <---------MYB52(1)                                                                                   <-------GAMYB                               <-------GAMYB                   <---------TOE2(3)  <---------MYB46(3)<              <----------DOF2 <---------MYB46(3)              <XXXXXXXXXXXXXXXXXXXXMIR870           <             <---------ANAC58<---------YAB1     <---------ARR14(2)           ---------->DOF2     ----             <---------ANAC58<---------AtMYB61  --------->ARR14(2)          --------->AHL20(2) <-----   <----------ID1 <----------DOF2*TSS           --------->GLK1(2)         XXXXXXXXXXXXXXXXXXXX>MIR846   ttttgaagacaaattgctttcttttttggtgatggttgagcgatgaagagtatcggtttatatttaagaaaaatcaaattaaagcggttgagttacgacg  15615600   ----------->HVH21   <------NtERF2                                                                               <-----  ------>NtERF2                              ---------->DOF2                              <----------  --------->LBD16                          --------->At5g28300                           <---------AHL20(2) --------->LBD16                          ----------->GT1                                --------->AHL20(2) --------->ETT(1)                 --------->DEAR3(1)  --------->WRKY38(1)        --------->AHL20(1) <---------LBD16                 <---------LBD16      <---------ZAT14            <---------AHL20(1) ---------LBD16              <-----------HVH21        --------->ZAT14            <---------AHL20(2) ---------ANAC46           ------>MYB83--------->MYB52(1)            <---------ETT(2)--------->AHL20(2) ----->DOF5.7(2)           ------>MYB46(1)--------->LBD16            --------->ETT(2)<---------AHL20(2) ----bZIP60(2)       ----------->HVH21 -------->P    <---------MYB52(1)          --------->AHL20(2)   ttgccgggacattaatcccttctctgaccaacttcaccggctaccggtaaaacccgttcactgtcttattgtcgactaaacaatttattaattaactatg  15615700                                                    ------->TEIL                                  ---                                                 <---------ANAC55(2)                              ---                                                 --------->ANAC55(2)                             <---                                           --------->At4g35610                              <--------                                           <---------At4g35610                           ------>ZmHOX2a(2)                                           <---------ZAT2                               <------ZmHOX2a(2)                                         <-----------RAV1(2)     <---------HSFB2a(2)   <---------ARR11(3)                               ------->TEIL--------->ZAT2        --------->HSFB2a(2)   <---------ARR14(2)                             --------->ZAT14    ------->TEIL     --------->HSFC1(1)    --------->ARR11(3) ----TOE2(3)                 <---------ZAT14  <---------SPL7     <---------HSFC1(1)    --------->ARR14(2) -GT1              <---------AHL20(2)   <------NtERF2   ---------->DOF2          ---------->DOF2<----   gttcttcagtaatgggcctatatttttggactgtacttgggcctcagctgtacgtatcaaaagggttcgagaaactcagagattaaagggatcttgaccg  15615800                                        <------------CBF             ------------>CBF                                       --------->ATHB12             --------->ANAC58                       <---------------AGL15                        --------->ANAC58     <---------At4g35610        ------------>CBF                  ---------->DOF2      --------->YAB1  ------>ZmHOX2a(2)    --------------->AGL15                    <---------TOE2(3)    --------->GLK1(2) ------>WRKY38(1)     ----------------->AGL3                    <---------YAB1       --------->ARR14(2) ------>WRKY12        ----------------->AGL2              --------->ICU4             <---------ARR14(2) ------MYB52(1)     <-----------GT1   <---------AHL20(2)  <---------YAB1  ---------->DOF2  <---------ARR14(2) -WRKY18(1)       <---------AHL20(2)  <---------YAB1    <------ZmHOX2a(1)<---------ATHB12  --------->ARR14(2) ---GAMYB  <----------DOF2 --------->YAB1<---------WOX13(1)--------->ATHB12 <---------TOE2(3)    <---   ttgatcgagatgactttgattttatccattaatagtcaatttgattgatgagttaagaggatgattaagaaagcaataaaggaagcgaatcggaatccac  15615900                                                <---------TOE2(3)                                        <------ZmHOX2a(1)                                      --------->LBD16                                     <-----------RAV1(2)                                     <---------LBD16                                  --------->GLK1(2)                       <<<<<<<<<<<<<<<<<LFY    ---------->DOF2                       >>>>>>>>>>>>>>>>>LFY  <---------YAB1                --------->YAB1         <----------DOF2          --------->ARR14(2)                  <------NtERF2      *TSS       ==============================HOX2a_HOX2a           ------>NtERF2     <---------ZAT14 ---------CBF    ------>ZmHOX2a(2)<---------ARR14(2)       <---------YAB1 --------->ICU4            <   attgtattaatctttttgatccagtagccattggcgaatccaggagtattaaagttccattttgattttggcgacgatgatgaacagagtttagagaaat  15616000                                                        <---------ANAC46                                                        <---------ANAC58                                                        <---------ANAC58    <---------ARR14(2)                               --------->ZAT14         <---------STY1(2)    --------->ARR14(2)                            <---------ANAC46----------->GT1                 <---------GLK1(2)                <---------GLK1(2)<---------ANAC46      --------->ZAT2 --------->ATHB12   <---------ANAC46                <---------ARR11(3)         ----------->GT1           <---------YAB1      <---------ANAC58              ----------->ARR10<---------ZAT14         <---------ZAT2--------->ICU4      <---------ANAC58 ---------AtLEC2--------->ARR11(3) <---------ZAT6      --------->STY1(2) ------>ZmHOX2a(2) ----------   ttgcattgaagaagagaagatttttggattttgtgtagtgggagaagggtaaaccctagcttgggagggacatgatcggatgctctaagtagcttgtgaa  15616100                                                                                   <---------ARR14(2)                                                                                   <---------ARR11(1)                                                                                   --------->GLK1(2)                                                                               --------->RAP2.3(1)                                                                               <------NtERF2                                                                               --------->ATERF1(1)                                                                              <---------DEAR4(2)                                                                              <---------ATERF1(1)                                                                              <---------ERF1                                                                              <---------RAP2.3(1)                                                                              <---------ORA47(2)                                                                              ------>NtERF2                                                                             <---------DEAR3(1)                                                                             <---------RAP2.3(2)                                                                             --------->ATERF1(2)                                                                             <---------ATERF1(2)                                                                             <---------RAP2.3(3)                                                                             --------->DEAR3(1)                                                                            <---------At4g35610                                                                            <---------LBD16                                                                            --------->ATERF1(1)                                                                            <---------ABI4(1)                                                                           <---------RAP2.3(1)                                                                           <---------ATERF1(1)                                                                      --------->ZAT2            -----                                                                      --------->At4g35610       -----                       <---------YAB1                                 <---------ZAT2   ------>ZmHOX2a(1)                     --------->YAB1                            --------------------->WRI1       <----                    --------->ARR14(2)                       <<<<<<<<<TBF1<---------DEAR3(1)   <-----                    <---------ARR14(2)          ------>ZmHOX2a(2)     <---------At4g35610     <------                <---------At4g35610            <---------GLK1(1)   <---------MYB52(1) --------->TOE2(3)   ---------->DOF2  --------->ICU4            --------->ARR11(3)  <-----------TGA1<---------ARR14(1) ->GT1        --------->ZAT18 --------->ZAT6  <---------ARR11(3)  <-----------HVH21--------->ARR14(2)   ttagagaaagagcaagtgagcaaatatgatgaacacttcgaatgggatgatctctgggccttcttcttcgtcagcttcggcggcgaatcctcagtctccg  15616200                                                                                            <--------       <---------ANAC55(2)    --------------->AtSPL3                                        ---------       --------->ANAC55(2)    <---------------AtSPL8           ----------->RAV1(2)          ---------  --------->YAB1             ---------->DOF2    <---------HSFB2a(2)                 <---------ICU4 ---->LBD16          ----------->RAV1(2)        --------->HSFB2a(2)                 --------->YAB1 ---->HSFB2a(2)     ------>NtERF2    --------->ANAC58  --------->ANAC58        <---------ZAT18 -----HSFB2a(2)    --------->ANAC58  --------->ANAC58  --------->ANAC46        --------->ZAT14 ----LBD16         --------->ANAC58  --------->ANAC46  --------->ANAC58        <---------ZAT14   <--- ---LBD16 ------->TEIL ----------->HVH21  <---------ALFIN1------->TEIL       --------->ANAC46  ------   ggaatcaaaacgtatttcaagacgcctgaaggaaagtacaagctccactacgagaagacgcatccctctgggcttcttcactacactcatggcaaaaccg  15616300            --------->CCA1(2)           <---------ARR14(2)         ----------->ARR10                                                                   <-------    --------->At4g35610                                                                      --------    <---------At4g35610                                                                      --------  <-----------RAV1(2)                                                                        -------- -ARR14(2) --------->ARR14(2)                                                           <----------DOF2 >ARR14(2) --------->ARR11(3)                                                     --------->ATHB12 --->MYB.PH3(1)                      <---------YAB1                              <---------YAB1 ------MYB52(1)           <----------DOF2                                 <---------ZAT18    -------- ----->GT1 <---------ARR11(3)      <---------AHL20(2)              --------->GLK1(1)<---------WOX13(1)   ttactcaggtgaagatttgattcgttttctttggtgtttatttttgaattgaaagtttaatccaatctgatttctttgcacttgtgattgctattacgaa  15616400  Previous    Next  AGI:  At2g37150.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G34040.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80846.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 15610663    to: 15615533    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g37160.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G53390.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G53390.2); similar to Os12g0172500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066281.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96577.2); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat ( Range:  from: 15615906    to: 15620013    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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