Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            ------>ZmHOX2a(2)         <------ZmHOX2a(2)        <-----------ARR10        --------->ARR11(3)                                   <---------ARR11(3)        <---------ARR11(3)                              --------->LBD16        --------->ARR14(2)                             --------->ANAC58        --------->AGP1                                 --------->ANAC58        <---------ARR14(2)                             --------->ANAC46        <---------GLK1(2)                            ------>ZmHOX2a(1)        --------->ARR14(3)                         <---------ANAC58    <<<<<<<GRF7--------->AtLEC2                    <---------ANAC58  ===============HOX2a_HOX2a                    --------->GLK1(1)                          >>>>>>>>>MYB1  ==============HOX2a_HOX2a                     <---------GLK1(1)                          >>>>>>>>>MYB2  ------>ZmHOX2a(1)  <---------DAG2       <------ZmHOX2a(1)--------->ANAC58         --------->ARR11(3)  ----------->HVH21------>NtERF2        <---------TOE1(2)  --------->ANAC58         <---------ARR11(3) -->TEIL<---------ARR14(3)             <---------LBD16<---------LBD16              <---------CCA1(2)   tttcctgacagatcttcatgcagcctttcgcatgctcaatctcaggaacgatttcctgcgcaagaaattcgacagtaagtcatacatatctctaactgct  15555700                                                            <---------------AtSPL3                                                            --------------->AtSPL3                                                    <-----------RAV1(2)                                                <-----------HVH21                                               --------->TGA1a<---------SPL7                                               <---------O2 <---------------AtSPL8                      <---------ANAC55(2)      --------->O2<---------------------WRI1             <--                  <-------GAMYB--------->AHL20(2)----------->HVH21                                ---                  =======================================MYC_MYB--------->SPL7                  -----                 ----------->GT1               <---------ANAC55(2)                <------------------ <----------DOF2 <---------MYB46(3)            --------->ANAC55(2)             --------->ALFIN1<-----   cttctttctccatttgcgatggttacataaaaaaaaaatcgattttgacatgtgacaggtatgaagtacgacctaagaagagtggaagaagtttactatg  15555800                                  ------>ZmHOX2a(1)                                ------>ZmHOX2a(2)                               =============HOX2a_HOX2a                               <------ZmHOX2a(2)                              --------->ARR14(2)                              --------->ARR11(3)                              <---------ARR14(2)                      <---------LBD16                      <---------RAP2.6(2)          <---------TOE1(2)   --------->ARR14(3)        <---------TOE1(1)     <---------ARR11(3)       ------>ZmHOX2a(2)      <---------ARR14(3)       =====================================HOX2a_HOX2a       ==================================HOX2a_HOX2a      --------->CCA1(2)      <---------GLK1(1)      ===================================HOX2a_HOX2a      --------->ARR14(1)     --------->GLK1(1)      <------ZmHOX2a(2)     ----------->ARR10     --------->ARR11(3)   --------->LBD16     <---------ARR11(3)  <---------DEAR3(1)     --------->AGP1   <---------RAP2.3(2)     --------->ANAC58     <---------ARR14(2)--------->LBD16        --------->ANAC58     --------->ARR14(2)------>NtERF2          --------->ANAC46             <---------DEAR3(1)   ----------->ARR10 <---------LBD16    <---------ANAC58                  ------>ZmHOX2a(1) -------bZIP60(1) --------->GLK1(1)  ------>ZmHOX2a(1)           ------>ZmHOX2a(1) ------>bZIP60(1) <---------GLK1(1)----------->RAV1(2)          --------->TOE2(3) ---->YAB1<---------TOE2(2)<------NtERF2<---------ANAC58       --------->YAB1 ---WRI1<---------TOE2(1)<---------ANAC46 <------NtERF2      <---------ARR14(2)        <---------TOE2(3) ----YAB1--------->LBD16<---------LBD16 <---------ANAC46     --------->ARR14(2)  <----------DOF2    <   atgtcaagatccgaggtttgatttccggcggagatcctcctggcgtccaagcagtccaaggccaatcctaaatgtcctcggctctttttaagtttttatg  15555900                                                             ----------->GT1                                                            --------->ANAC58                                                            --------->ANAC58                                                       <----------ID1                                                      --------->RAP2.6(3)                                                 --------------->AGL15                                                 <---------------AGL15                                                ----------------->AGL2                                                <-----------------AGL1                   <---------REM1(1)                         <-----------HVH21      ----------------->AG                   <---------ANAC46           <---------At4g35610                  =====================================================           --------->STY1(2)       <---------ZAT14   --------->MYB52(1)           xxxxxxxxxxxxxxxxxxx   <----------DOF2      <----------ID1          ----------------->AGL3       <---------ZAT14 -----------GT1 --------->YAB1    <---------ZAT6----------------->AGL1       --------->ZAT14   tataactttgtttagctagcatgaaaacgtcaaggagtgttcttctctaaaccaaaaacggcaaggaaaatagagagactgtagtttttaggtgtagttt  15556000                --------->ANAC58           <----------ID1          --------->RAP2.6(3)         --------->MYB52(1)     --------------->AGL15     <---------------AGL15    ----------------->AG                                                            --------->At4g35610    <-----------------AG                    ----------->RAV1(1)           --------->LBD16    <-----------------AGL1            ---------->DOF2               <---------MYB52(1)    <-----------------AGL2 <-----------RAV1(1)                    <---------ZAT6    <---------At4g35610 --------->ICU4 --------->ANAC58<---------PCF2                <---------ZAT14    <---------At4g35610 =====================MADS_MADS----------->TCP11(1)          <----------DOF2     --------->At4g35610 xxxx>smallRNA(l2)      <----------DOF2     <---------ALFIN1 <---------DAG2      <---------ZAT2   ---   gcaattactgaaaacggcaagtattccttttgtgggccttgaaagcccacattttagtcacaactttactgttatccgaagtcagcagcttaatagtata  15556100                                                                        <-----------TGA1                                                                       --------->ANAC55(2)                                                 --------->ANAC46      <---------ANAC55(2)                                                 --------->ANAC58      --------->ANAC46                                                ------->TEIL           --------->ANAC58                                                <---------TOE2(2)      --------->bZIP60(1)                                             --------->ANAC58          --------->ANAC58                                    ------>NtERF2--------->ANAC58      <---------TGA2(1)          ---                                   --------->LBD16                     --------->TGA2(1)         ----                  <---------ALFIN1<---------ANAC58                     <---------bZIP60(1)       <---              --------->GLK1(1)   <---------ANAC58                 <---------ANAC58             <----        <-------TEIL----------->RAV1(2)      --------->ANAC58<---------DEAR3(1)    --------->GLK1(1)    --------->ARR11(3)            <---------ANAC46        ----------->HVH21 --------->ICU4      -----    <---------ARR11(3)           <---------LBD16<---------TOE1(2)  <---------ANAC58<---------GLK1(1) ------>ZAT6  ------->TEIL     *TSS<---------ZAT18    <---------YAB1  <-----------STF1      ---------   acagtagatgttcatgaactccacctgtccatcgttgcggacttgaaacgcacgttatatttgacggtgtcttacgtcattttggatttcaaaactaaat  15556200            <---------ARR14(2)        --------->HSFB2a(2)     <----------DOF2                                                    <-----------HVH21   --------->At4g35610                                             --------->ZAT2   <---------At4g35610                                      --------->ARR14(2)--------->ZAT14 ------>WOX13(1)                                      --------->RAP2.6(2)     <---------ZAT14 ----->AHL20(2)         ------------------------>ANAC81 <------NtERF2   <-----------TGA1 ------AHL20(2)      ---------->DOF2               ------->GAMYB   <---------ZAT2 -----AHL20(2)  --------->LBD16                   --------->ZAT6 <---------ALFIN1 ---->AHL20(2) --------->ANAC46                   --------->MYB46(3) ------>ZmHOX2a(1)             <- >AHL20(2)  --------->ARR14(2) <----------ID1   --------->MYB52(1) ----------->RAV1(2)     ------>ZmHOX2a(1)   aaatcagcttttggaatccgaaacaaagacaaaaaaacaaaatccaagtctaacagtcgccatttcccctcctgcgtcagtgttcttcgtctcctctcgt  15556300                                                              --------->GLK1(2)              <----------DOF2                  ----------->HVH21                             --------           --------->ARR11(3)                <---------At4g35610                       <----------DOF2           <---------ARR11(3)                --------->At4g35610                    ------>ZmHOX2a(2)          <---------CCA1(2)             <----------DOF2    ----------->ARR10       <------ZmHOX2a(2)     <----------DOF2         --------->HSFB2a(2)       <---------ZAT6             --------->ARR11(3) --------CCA1(2)             <---------HSFB2a(2)------>NtERF2<---------GLK1(2)    <---------ARR11(3)   cgtctctctttggtatcttttttcttagcttcgagtactattcttttcgctgacattgtgttagattctctcttgaacttgaacgatctcttttccaaca  15556400                                                                                                -----                                                                                                <----                                                                                                <----                                                                                           --------->At4g35610                                                                                           --------->ZAT2                                        --------->MYB52(2)                                 <---------ZAT2                              <---------LBD16 --------------->AGL15                        <---------At4g35610                   <---------TOE1(2)  <---------MYB52(1)              <---------TOE2(3) <---------At4g35610                 <---------SPL7     <---------MYB46(3)              ---------->DOF2--------->At4g35610           --------->YAB1     --------->HSFB2a(2)        <---------At4g35610      --------->ANAC58  < --->RAV1(1)--------->ARR11(3)<---------HSFB2a(2)      <-----------RAV1(2)        --------->ANAC58 <-   caaatgtaatgtatgatatcgttcgattttttctcggattgttagtttcttcaaattgcaggtgtttagttaaaggaaggggataagctaagcagctgga  15556500            <----------DOF2                      <---------AHL20(2)       <----------DOF2       ---------->DOF2 <---------ICU4     <------------------------ANAC81         --------->YAB1         <-----------HVH21  <----------DOF2         --------->LBD16   <---------YAB1       <---------At4g35610            ----- ---->ARR14(2)           <---------LBD16 <---------AHL20(2)      <---------ZAT2                 <---- -----ARR14(2)           --------->LBD16 <---------YAB1          --------->ZAT2        <---------ALFIN1 -----GLK1(2)           <---------ANAC46<---------AHL20(2)       --------->At4g35610   ----------->RAV1(1) ------------------------ANAC81----------->GT1 <---------YAB1  --------->MYB46(3)   --------->PCF2 -- ----------GT1    <-----------GT1     <---------AHL20(2) <---------TOE2(3)         <-----------TCP11(1)   ttttcttttcttttcttttttttcttccctggaaagttatatttttattattattttctaatgtaacagctgtgagtcgtctctatggcccacattatac  15556600  Previous    Next  AGI:  At2g37020.1    Description:  DNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO18175.1); contains InterPro domain Translin, C-terminal; (InterPro:IPR016069); contains InterPro domain Translin; (InterPro:IPR002848); contains InterPro domain Translin, N-terminal; (InterPro:IPR016068) Range:  from: 15553592    to: 15556116    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g37025.1    Description:  TRFL8 (TRF-LIKE 8); DNA binding. similar to TRFL6 (TRF-LIKE 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G72650.1); similar to TRFL6 (TRF-LIKE 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G72650.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN66760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057) Range:  from: 15556131    to: 15559184    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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