Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------ARR14(2)                                              <----------ID1                                         --------->MYB52(1)                                    ------                                       <---------MYB46(2)                               --------->At4g35610                      ------->TEIL     <---------MYB111(1)                 --------------->AGL15             --------->GLK1(1)         <---------MYB52(2)  ---------->DOF2 <---------------AGL15 --TEIL      <---------GLK1(1)   <---------HSFB2a(2)--------->ARR14(2)  <-----------GT1 <---------At4g35610   actaatttcaaattgaaatccatgaacttcaaattccagtaactaacagagacaaatccagcaaagacacaatatttctatatgaagagtagctgaataa  15547000                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                    <---------HSFC1(2)                                                                                    --------->HSFB2a(1)                                                                                    --------->At4g35610                                                                                    <---------At4g35610                                                                                    --------->ZAT2                                                                                    --------->HSFC1(2)                                                                                   <---------TOE1(2)                                                                                  <---------CCA1(2)                                                                                --------->TOE1(1)                                                                                --------->TOE2(1)                                                                              <---------ANAC46                       <---------At4g35610                                 --------->ARR14(2)             <------ZmHOX2a(1)    --------->At4g35610       --------->At4g35610------>ZmHOX2a(1)   <-  --------->MYB52(1)   --------->At4g35610<----------DOF2 <------ZmHOX2a(1)<---------ARR11(3)   ----- --->YAB1<------ZmHOX2a(1)        <---------At4g35610 --------->TOE1(2)    <---------ARR14(2) <------   gaagtaccagaggaaggagaagagtagctgctcttgagatgagtctttgtctgaaacgaaggagatgaagaaaccaagttcctcgtagcttccatttcac  15547100                                                <------ZmHOX2a(1)                                    --------->ANAC58                                    --------->ANAC58         --------->YAB1                                   --------->LBD16        --------->YAB1      ---------->DOF2             --------------->AGL15>>>>>>>>>TBF1                          ------- --------GLK1(2)              <---------ANAC58<---------TOE1(3)                          ----------->HVH21 ---->ANAC46       --------->GLK1(2)--------->ANAC46>>>>>>>>>TBF1               <---------ZAT14 -----GT1     ---------->DOF2 <---------ANAC58<---------TOE2(3)                 --------->ZAT14   agaatcaccaaagaataaaagactctgtttttgcttccacgaatggctaaggaagaagaagaataagaacatgaggctactctacagagccatgacgaac  15547200              <---------ALFIN1            --------->ANAC58            <---------ALFIN1        <---------ALFIN1       <------NtERF2                     --------->AHL20(2)      ----------->RAV1(1)<---------AHL20(2)                 --------->AtLEC2      ------>NtERF2     <---------AHL20(1)            ---------->ID1  <---------GLK1(2)     <----------ID1     --------->AHL20(2)           <-------GAMYB  ----------->ARR10  <---------DAG2  --------->DAG2   ------------>CBF  --------->ICU4 <---------MYB46(3)<---------ARR14(2)            - ---------->DOF2  *TSS  <---------AHL20(2)          --------->MYB52(2)--------->ARR11(3)            = -->MYB52(1)--------->ANAC58    ----------->GT1     <-----------RAV1(1)                <----------DOF2   agataaggcgacacacacactcccaattttttttttgtaaaaattaaaacttgtttgttgccatggaagtcagattttgttctctctccctttttttttt  15547300              <-----------RAV1(1)                                                                  --           <------ZmHOX2a(2)                                                                   ------          --------->ARR11(3)                                                                  -------       --------->ALFIN1              ---------->DOF2                <---------ATHB12        <-------- ----->ZmHOX2a(1)          <------------CBF             ----------->GT1       *TSS     <---------MYB52(1) =================HOX2a_HOX2a     <----------DOF2     ---------->DOF2--------->YAB1   <----------DOF2   tcctacagagtggatcatgttgggccttatattgggcttaaaagcccaaattatccaaaagttaattcgaatcatcttcttctccctcctttagtaaccc  15547400  --------->ARR14(1)  --------->GLK1(2) --------->ARR11(3) <---------GLK1(2)                                                                      <---------ARR14(2) <---------ARR14(2)                                                                 --------->At4g35610 --------->ARR14(2)                                                                 --------->ZAT18 --------->ARR10           <-----------TGA1                                         --------->ZAT14 --->TOE1(3)               <-----------HVH21                    <---------At4g35610 <---------ZAT14 -->ZAT6      --------->ARR14(2)                         --------->ARR14(2)   --------->GLK1(2) ---GT1       <---------ARR14(2)                         <---------ARR14(2)  <---------GLK1(2)   taagattctctctgtgaatccttgttcatcgtcactgaaattagtttacaaaatcgacgaattcggagatgatttttcagaatgtgtgcagaaatgagtc  15547500                                                                          <-------GAMYB                                                                          <------NtERF2                                                                       <---------At4g35610                                                                       <------NtERF2                                                                       --------->ATERF1(1)                                                                       <---------LBD16                                                                      ------>NtERF2                                                                      <---------ATERF1(1)                                                                      <---------RAP2.3(1)                                                                      <---------ORA47(2)                                                                      <---------ERF1                                                                      <---------DEAR4(2)                                                                      <---------RRTF1(1)                                                                     <---------RAP2.3(3)                                                                     --------->ALFIN1                                                                     <---------RRTF1(3)                                                                     <---------RRTF1(2)                                                                     <---------RAP2.6(2)                                                                     --------->ATERF1(2)                                           <---------ANAC58          <---------ANAC46                                           <------MYB46(1)           <---------DEAR3(1)                                           <---------ANAC46          --------->DEAR3(1)                                           <------MYB83              <---------ATERF1(2)                                           <---------ANAC58          <---------RAP2.3(2)                                           <---------ANAC55(1)      <------NtERF2  <---------LBD16                                          <---------DEAR3(1)        --------->ATERF1(1)                                          --------->MYB46(2)        --------->RAP2.3(1)                                        <---------ARR14(2)          <---------ABI4(1)                                        <---------MYB52(1)         <---------ATERF1(1)                                   --------->ANAC46                <---------RAP2.3(1)                     --------->ARR14(2) --------->ARR14(2)         <---------DEAR4(2)------>NtERF2                     <---------ARR14(2)<---------ZAT2             <---------DEAR3(1)--------->ANAC46                    <---------GLK1(2)  --------->ZAT2        --------->HSFB2a(2)<---------GLK1(1)              <---------ANAC58     --------->ANAC58   --------->ARR14(2) <---------MYB46(3)              <---------ANAC58     --------->ANAC58   <---------ARR14(2)<---------ANAC46      --------->ANAC58           ---------->DOF2     <---------GLK1(1)<---------RAP2.6(1) <------ZmHOX2a(1)      --------->ANAC46   <---------ANAC58--------->ZAT14     ------>ZmHOX2a(1) ------->TEIL   -------      --------->ANAC58   <---------ANAC58<---------ZAT14  ------>ZmHOX2a(1)   <---------CCA1(2) <xxxx   caacttcaacgctatagcttccgaatcgcgttcccaaacgcagttcggtgtttcgaaatcctcctcgagcggcggcggatgtatctccgccaggactaaa  15547600                                                        --------->RAP2.3(2)                                                        --------->DEAR3(1)                                                       --------->RRTF1(1)                                                       --------->RAP2.3(1)                                                       --------->ATERF1(1)                                                       <------NtERF2                                                      <---------ATERF1(1)                                                      --------->ABI4(1)                                                      ------>NtERF2                                                     --------->RAP2.3(2)                                                     --------->RAP2.3(3)                                                     --------->ANAC46                                                     <---------DEAR3(1)                                                     --------->DEAR3(1)                                                     --------->ATERF1(2)                                                     <---------ATERF1(2)                                                    --------->DEAR4(2)                                                    --------->ATERF1(1)                                                    --------->RAP2.3(1)                                              <-----------ARR10                                            --------->LBD16                                            ------>NtERF2                  <---------SPL7           <---------DEAR3(1)                 --------->MYB46(3)        --------->ATERF1(2)               --------->MYB52(1)          <---------RAP2.6(2) --------->ARR14(2)       <-----------HVH21               <---------DOF5.7(2)         <---------ATERF1(2) --------->ARR11(3)  <---------ZAT2              <---------WRKY12             <---------RAP2.3(3) <---------GLK1(2)   --------->ZAT2             --------->DOF5.7(2)           <---------RAP2.3(2) <---------ARR14(2)  <---------At4g35610          <---------TOE2(3)               --------->RAP2.6(3) <------ZmHOX2a(1)<-----------HVH21       --------->ANAC58                  ------>NtERF2<---------RAP2.3(1)     <---------ANAC55(2)       --------->ANAC58      <------NtERF2<---------LBD16------>NtERF2        <---------ANAC58       --------->ANAC46      <---------MYB52(1)     --------->ERF1            >>>>>>>>CAMTA3 <-----------HVH21------->GAMYB    <-----------GT1 <---------ATERF1(1)    <---------DOF5.7(2) --->DOF2 <---------TOE2(2) <---------RAP2.6(3)   --------->ANAC46<-----------GT1  --------->At4g35610 xxxxxxxxxxxxsmallRNA(i)   --------->DEAR3(1)<------NtERF2<---------MYB52(1)  <---------ANAC58 ------   gaccgtcacacgaaggttaacggacgaagccgtcgagttacgatgccggctctcgccgccgctaggattttccagttaacgcgtgagctcggtcacaaaa  15547700                                                       <---------ALFIN1                                                      <------NtERF2                                 <                                                     <---------RAP2.6(3)                           <-                                                     ------>NtERF2                                 <-                                                    <---------ATERF1(2)                            <-                                                    --------->DEAR3(1)                             <-                                              --------->ATHB12                                     <-                                              <---------ICU4                                       <-                                             <---------ATHB51                                      <-                                             <---------YAB1                                        <-                                       --------->DEAR3(1)       --------->ANAC55(2)                <-                                      --------->MYB46(3)        <---------ANAC55(2)               <--                                --------->At4g35610 --------->ANAC46                          <------                                <---------At4g35610 --------->ATERF1(2)                       <------         --------->MYB46(3) --------->WRKY18(1)     --------->RAP2.6(2)                   <--------P<   <------ZmHOX2a(1)<---------ANAC58  --------->DEAR3(2)       <---------LBD16           <-------GAMYB --->MYB52(1)       <---------ANAC58 ------->TEIL  <---------RAP2.6(2)   <---------At4g35610 <-------   ctgaaggagaaaccatcgaatggcttcttagtcaagctgaaccgtcgattattgccgccactggctacgggactaagctcatttcgaattgggttgatgt  15547800                                       --------->LBD16                                       <------NtERF2                                       ------>NtERF2                                      --------->RAP2.6(2)                                      --------->ANAC46         --------->ARR14(2)           --------->DEAR3(1)       --------->HSFC1(2)            <------NtERF2       --------->HSFB2a(1)           --------->RAP2.3(1)       <---------HSFB2a(1)           <---------LBD16       <---------HSFC1(2)           <---------ATERF1(1)     --------->SPL7                 <---------RAP2.3(1)    ------>NtERF2                   ------>NtERF2    <------NtERF2                 --------->ATERF1(1)   <---------SPL7                <-----------HVH21   ----------->HVH21            <---------O2--------->ANAC58  <---------ANAC46              <---------bZIP60(1) --------->ATERF1(1)            ================================MYC_MYB <------NtERF2                  <---------bZIP60(2) --------->At4g35610            <---------ANAC58 <---------At4g35610            ================================MYC_MYB ------>NtERF2                  <---------ANAC58                                   <---------ARR14(2) ---------RAP2.3(1)             --------->O2--------->ANAC58                       <---------AGP1 --------RAP2.3(3)              <---------TGA1a                                    --------->ARR11(3) --------RRTF1(2)               --------->TGA1a                                    <---------ARR11(3) --------ANAC58                 --------->TGA2(1)                                <------MYB83 --------RAP2.3(2)              <---------TGA2(1)                            <------MYB46(1) --------DEAR3(1)              ----------->STF1                  ------->GAMYB   <------MYB46(1) --------ANAC46              ----------->TGA1     --------->ANAC58           <------MYB83 --------RAP2.6(2)           ----------->HVH21    --------->ANAC58           <---------MYB46(3) --------RRTF1(3)        <------NtERF2--------->RAP2.3(2)  ----------->RAV1(1) <--------P<-----------HVH21 --------ANAC58        <---------DEAR3(1)   --------->ANAC46    --------->MYB46(3) --------->ARR14(2) -------LBD16         <------NtERF2--------->DEAR3(1)   --------->ANAC58    <---------TOE1(2)    ---- ---REM1(1)         <---------DEAR3(1)--------->RRTF1(2)------->GAMYB------>NtERF2<---------CCA1(2)-- -----RAV1(1)    <---------DEAR3(1)<---------DEAR3(1)   --------->ANAC46   <--------P------>ZmHOX2a(2) ---------RRTF1(1) <------NtERF2--------->bZIP60(1)     --------->ANAC58 <---------REM1(1)   <------- --TOE2(3)   ------>ZmHOX2a(1)<---------TGA2(2)   --------->ANAC46  --------->DEAR3(1)<----------DOF2   tgcggcggacgattcctcgtcgtcgtcgtcgatgacgtcgccgcaaacgcaaacgcaaacgccacaatcgccgagttgtaggttggatctttgtcagcca  15547900  Previous    Next  AGI:  At2g36990.1    Description:  SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18182.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016 Range:  from: 15544337    to: 15547218    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g37000.1    Description:  TCP family transcription factor, putative. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G47620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18178.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 15547378    to: 15548327    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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