Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------TGA1a                                                                   ==================================bZIP_DOF                                                                   --------->TGA1a                                                 <---------TOE2(3) <---------O2                                            <---------ICU4         --------->O2                                            --------->YAB1      ----------->HVH21                           <---------ZAT14  -------->ATHB1    --------->ZAT2                           <---------ZAT18  --------->ATHB12  --------->At4g35610                           --------->ZAT18 <---------YAB1     <---------At4g35610               <---------ATHB12            <---------ATHB12<---------ATHB12                        --        ----------->GT1<-------MYC3        --------->ICU4--------->WOX13(1)                        <-     --------->YAB1    ------->MYC3  <----------DOF2   <---------YAB1                     ---------->DOF2 ---------ATHB12--------->YAB1       ========================================bZIP_DOF   --------->YAB1   aaatcaagaatagttaaatcatacatgtgtgaacttaaacttttaatcattgaagttatcaatcagctcacgaggcaattcatatgcgaatcaaaagatg  15178800                                                     --------->ARR14(2)                                                     <---------ARR11(3)  <---------ANAC58                         <---------YAB1  <---------ANAC46   --------->ZAT14     --------->YAB1           --------->TOE2(3)  <---------ANAC58   <---------ZAT14     <---------ICU4     --------->YAB1 <-----------GT1 ------->GLK1(1) --------->ZAT6         <---------ATHB51   <---------YAB1  <<<<<<<<<<<<<<<<<LFY --------GLK1(1)--------->ZAT18         --------->ICU4--------->CCA1(2) <---------ICU4   gatttcttgaaacttaagaacactactgtgttcaatatacaaattatgaccacaagatttgatcataaacttaatttttacaatggaagttagagagcga  15178900                                             =====================HOX2a_HOX2a                                             ------>ZmHOX2a(2)                                     <---------ZAT14                                     --------->ZAT14                                              ---                                     --------->ZAT18                 <---------ANAC46   --------->YAB1                              <---------WRKY18(1)----------->GT1    <---------AtMYB61  <---------ATHB12     <---------ANAC58        ----------->HVH21 --------->LBD16      --------->ALFIN1 --------->WOX13(1)     <---------ANAC58<---------ATHB12<---------ZAT18       <------ZmHOX2a(1)        --------->MYB46(3)   aaatgatgcgttctcgtctccaaatcaaaccatgaccagttcactgatccagagtaaaataggacttcatgtggtggaacagaacaacaatcaagaagag  15179000                                                                                       ------>ZmHOX2a(2)                                                                                   <---------YAB1                                                                              --------->ANAC58                                                                              --------->ANAC58        <---------YAB1   <---------DAG2                                      --------->ZAT18      --------->YAB1     <----------DOF2                                   ------->GAMYB      <---------ICU4    <---------ANAC58                                   <---------ZAT18    -------     <---------ATHB12   <---------ANAC58                                  --------->ANAC58   -------- -------->GT1     ------->TEIL <---------AHL20(2)                         --------->ANAC58   --------   tagttaaatcatcatacatgtatattgctttatttttttttgtttgtttgtgcaaattgtgttttgttgataatcaacgcacactatgatccatacgtta  15179100                            <---------ICU4                            --------->YAB1                           --------->ICU4                        <---------YAB1                      --------->YAB1                      ----------->GT1                 >>>>>>>>>>>>>>>>>LFY                                                   --------->ANAC58                --------->PCF2                                                          ------->GAMYB                <---------ZAT18                                                         --------->ANAC46                --------->ZAT18                                                         --------->ANAC58         <------------CBF--------->YAB1                              <-------TEIL      --------->MYB46(3)   <----------DOF2  <------------CBF                           ---------->DOF2     --------->ZAT14 -->DOF5.7(2)   <---------PCF2      --------->ANAC46      ----------->GT1        --------->ANAC46 ->TOE2(3)      <---------PCF5 --------->YAB1            --------->DAG2        --------->ZAT6    ---- ->TOE1(3)      --------->PCF5 <---------ICU4           ---------->DOF2  *TSS<-----------GT1 <-------   atgggctttggaattgagggcccattgtaataatcaacacaaaaccctaagaaatggataaagtataaagcttcattttttacactgcaaacgccgtttc  15179200                                                             <---------ARR11(3)                                               --------->ANAC58                                       <---------ANAC46    --------->ANAC58                                  --------->ARR14(2)  ------->GAMYB                                  --------->ARR11(3) --------->MYB46(3)                                  <---------ARR14(2) --------->DEAR3(2)                   <---------bZIP60(1)      --------->LBD16             <---------ARR11(3)-------->P    <---------ALFIN1        --------->bZIP60(1)      ------>NtERF2     ---------->DOF2<---------ANAC58    --------->ANAC58        --------->ZAT14    <---------LBD16  --------->ANAC58  <---------ANAC58 xxxxxxxxxxxxxxxxx>smallRNA(se3)----------->HVH21   --------->MYB52(1)--------->ANAC58 <-----------------------TaNAC69(2)           --------->ZAT18 ----->HSFB2a(2)    ------->TEIL  <---------GLK1(2)--------->MYB52(1)         --------->ETT(2)  <---- --MYB52(1)   <----------ID1  <-------TEIL     --------->ANAC58--------->AtMYB61   <---------ZAT14   gagacttccggcgaagaagacgaacgcaaagatgcagattttcgtgaaaacgctaaccggcaagaccatcaccctcgaggtcgagagcagtgacaccatc  15179300                        ---------->DOF2                   --------->LBD16                  <---------HSFB2a(2)                  --------->HSFB2a(2)                --------->CCA1(2)                <------ZmHOX2a(2)               <---------ARR11(3)               <---------ARR14(2)               --------->ARR14(2)                                                       <XXXXXXXXXXXX               --------->ARR11(3)                                             ------>ZmHOX2a(2)               --------->AGP1                                               --------->ARR11(3)   <-----------HVH21 <------ZmHOX2a(1)                    ----------->GT1   <---------ARR11(3) -----ETT(2) ----------->ARR10----------->GT1  <----------DOF2  <----------DOF2       --------->ATHB12   gacaatgtcaaggccaagatccaggacaaagaaggtatattttctaatgctttttaaaaattgtaactttgaaattgtgatctcttagtgattcgttttt  15179400                         <---------ZAT2                         --------->At4g35610                         <---------At4g35610                         --------->ZAT2                        ----------->RAV1(1)                   --------->LBD16 <---------ARR11(3)                  --------->HSFB2a(2)       --------->LBD16                  <---------HSFB2a(2)------>ZmHOX2a(2)                 <---------LBD16   --------->ARR11(3)                ------>ZmHOX2a(1)<-------TEIL<------NtERF2                --------->At4g35610   <----           --------->GLK1(1)    <--------P --------->LBD16                <---------At4g35610   -----           <---------GLK1(1)  <---------MYB46(3)                      <---------ANAC58      ---------         ===================================HOX2a_HOX2a               <---------ANAC58    --------->LBD16         <------ZmHOX2a(1)   <---------AtMYB61                      --------->SPL7       --------->HSFB2a(2)      <---------LBD16  <-----------RAV1(2)<---------LBD16           ------->TEIL         <---------HSFB2a(2) XXXXXXXXMIR415 ============================HOX2a_HOX2a           <---------SPL7  --------->REM1(1)   gctctgtttcaggaattcctccggaccagcagaggttgatcttcgccggaaaacagcttgaagatggtcgtaccttggctgactacaacatccagaaagg  15179500     <---------HSFB2a(2)                                 <---------WOX13(1)     --------->HSFB2a(2)                                >>>>>>>>>ARR1     --------->HSFC1(1)                                 >>>>>>>>>ARR2 <----------DOF2                                       --------->ATHB12 -----ARR11(3)                          ------->TEIL   --------->YAB1          <---------MYB52(1) ---->ARR11(3)              <----------DOF2           <---------YAB1      --------->GLK1(2) ->DOF2                 <---------GLK1(2)             --------->ICU4  ------>ZmHOX2a(2)   tctctttctcgaatttgaatgttttggattctttagaaaatgaaactagtatagctatgattgttttgttgatccaattctgttttgtttactataaaac  15179600                                                                   --------->ANAC58                                       --------->ATHB12          <---------ANAC46                                      <---------YAB1       <-----------RAV1(1)   --------->ANAC58                                  ----------->GT1      <---------TOE2(3)         --------->ANAC58                                  <------MYB83        --------->YAB1     --------->YAB1         -----           ------->TEIL           <------MYB46(1)   <---------WOX13(1)<---------TOE1(2)   --------->ATHB12      <----------DOF2            <---------AtMYB61--------->ATHB12 --------->ANAC58      --------->ICU4   agagtcgactttgcatcttgttctgaggcttaggggaggtatcattgagccttcattgatgatgttggctcgtaagtataaccaagacaaaatgatttgt  15179700  Previous    Next  AGI:  At2g36170.1    Description:  ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A). Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M0W3;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT3G52590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48597.1); contains InterPro domain Ribosomal protein L40e; (InterPro:IPR001975); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 15179173    to: 15180359    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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