Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                    --------->DAG2      <-----------HVH21                                 <----------DOF2                   ---------->DOF2 <---------ANAC58              <---------At4g35610 <---------ARR11(3)               <XXXXXXXXXXXXXXXXXXXXMIR396A                      --------->At4g35610 --------->ARR11(3)            --------->RAP2.3(3)    <---------ANAC58         <----------DOF2<---------GLK1(2)    <---- --YAB1 <------ZmHOX2a(1) --------->ALFIN1  <---------ANAC55(2)  <-------GAMYB      <---------CCA1(2)   aagtctcttaggagccctcaaaaaagctgtggagattgctcgagtcacataaacatttgcctctttcagttgaaaccgaatttcgaatatctcttttgct  15176500                                                                                   --------->O2                                                                                   <---------ANAC55(2)                                                                                   ==================                                                                                   <---------TGA1a                                                                      <---------TOE2(3)       -------                                                                      <---------TOE1(3)  <------ZmHOX2a(1)                                                             ---------->DOF2       <---------O2     -                                                          --------->YAB1           --------->TGA1a  -              <---------ANAC58                     ----------->GT1   ========================bZIP_DOF    <----------DOF2                           <---------YAB1 ================================bZIP_DOF -------->ANAC46                             <---------ARR11(3)      ---------->DOF2    ----------->GT1 ------DOF2   <---------ANAC58             --------->ICU4<---------AHL20(2)    <-----------HVH21-----   ctacgtctttctagtttcttactgctactactacttatctgagacatgatcactggtaaataataaagttttaaagtttggggtcacatgaggaaacaac  15176600                                                                                    --------->ARR14(2)                                                                                    xxxxxxxxxxxxxxxxx                                                                                --------->ATERF1(1)                                                                                <------NtERF2                                                                               ------>NtERF2                                                                            xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxxxx>smallRNA(se3)          xx                                        --------->At4g35610          --------->ZAT18<---------ARR14(2)                                        <---------At4g35610         xxxxxxxxxxxxxxxxx>smallRNA(fl3)xx       ---------->DOF2               --------->LBD16     xxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxx     <---------MYB52(2)             <---------ANAC58     *TSS    <------NtERF2 ----------->RAV1(1)xxx =================bZIP_DOF          <---------ANAC46     xxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxx ---->RAV1(1)                      <---------LBD16       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxx -------->ANAC58         <---------AHL20(2)     --------->MYB46(3)  <---------AtMYB61--------->CCA1(2) -------->ANAC58     ----------->TBP<---------ANAC58  ------------>CBF   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->ZAT6      <---------YAB1 <-----------RAV1(1)   --------->YAB1xxxxxxxxxxxxxxxxxx>smallRNA(se3)xx   actagcaactaaagtattatgctataaataatcgtgttgcggagctatcaacaaatgacaatttggccgagtggtctaaggcgccagatttaggctctgg  15176700               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(s)              <-------TEIL             xxxxxxxxxxxxxxxx>smallRNA(s)           <---------DEAR3(2)          <---------TOE1(2)         <------NtERF2----------->RAV1(1)         --------->ALFIN1         xxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ANAC46       <---------ANAC58       --------->ALFIN1       <---------ANAC58    xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      <------NtERF2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       <---------DEAR3(1) ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)                     --------->TOE2(3) x>smallRNA(si3)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                ----------->GT1 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                             --------->GLK1(1) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------AHL20(2)     <---------GLK1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ARR11(3)       <---------ARR11(3)                <----- xxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(1)       <---------ARR14(2)             <-------- xxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)   <----------DOF2--------->TOE1(3)       --------->ZAT18 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->AHL20(1)       --------->ARR14(2)          --------->ALFIN1 xxxxxxxxxxxxxx>smallRNA(fl3)       <---------ARR11(3)       --------->ARR11(3)      ---------->DOF2   tccgaaagggcgtgggttcaaatcccacagttgtcaaatattttttttatattcttttgtccagatatcgttaaaacgtcgtcgttacaaagtgggccga  15176800               --------->GLK1(2)               --------->ARR14(1)               --------->CCA1(2)              --------->ARR11(1)              --------->ARR14(2)              <---------GLK1(2)            ---------->DOF2              <---------ARR14(2)       --------->TOE2(3)            ----------->ARR10          --------->TOE1(3)                                           <-    ------>MYB46(1)                 <---------GLK1(1)                                   ---------->DOF2    ------>MYB83<-------TEIL  <---------ANAC55(1)                                     <---------AHL20(2)  --------->MYB46(3)          <---------ANAC58                                        ----------->TBP --------->ANAC58             <---------ANAC46                                     --------->AHL20(1) --------->ANAC58  ------>NtERF2    --------->GLK1(1)                              <---------AHL20(1) -NtERF2--------->ANAC58      <---------ANAC58           --------->ZAT6      --------->TOE2(3)   *TSS -PCF2  --------->ANAC58     <-----------------------TaNAC69(2)              --------->TOE1(3) <-----   agaacccaacaagtaagattcggcccaaatttacgtggaaaccctaaacgctcgttttctcactaagaagtctcataaaccctaatatataaaagcgatt  15176900                                             --------->ARR14(2)                                             <---------ARR14(2)                                            <------NtERF2                                          --------->ANAC46                                         <---------LBD16 <---------GLK1(2)                   --------->REM1(2)                             <----------DOF2 --------YAB1                       --------->ALFIN1              <----------DOF2  --------->TOE2(3) ----GLK1(1)                      <---------ANAC46      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tctgattcttccatcgtttctctcttgcaaaactctgtgtgtaggcggaactacagaaccaagagcctctttctaatcggagttactttaatccccttga  15177000                                                                                      >>>>>>>>>>>>>>>                                                                                   <---------MYB46(3)                                                                                 <---------ANAC58                                                                                 <-------GAMYB                                                                                 <---------ANAC58                                                                                <---------MYB46(3)                                                                               <---------TOE2(3)                     --------->DAG2                   <------MYB83             <---------YAB1                    ---------->DOF2      <---------GLK1(2)                 --------->ARR11(3)      --------->ANAC58          <----------DOF2       <------MYB46(1)      <---------ARR11(3)      --------->ANAC58         <---------ICU4       <---------WOX13(1)     <---------GLK1(2)   accatggtaagcctcttctgcgaaaagttttcatcttttctccgattatctcagattggtttgagaatacatatgtagattttggttgttccattgtttc  15177100                                                             --------->AHL20(2)                                                             <---------AHL20(2)                                                        <---------MYB52(1)                                                      <-----------RAV1(1)                                                      <---------MYB46(3)                              <----------DOF2   ------>ZmHOX2a(1)                       <---------ARR11(3)     ------>ZmHOX2a(2)                       --------->ARR11(3)    <------ZmHOX2a(2)                      --------->CCA1(1)     --------->ARR11(3)                  --------->AHL20(2)        --------->ARR14(2)       <---------GLK1(1)   <---------AHL20(2)     <----------DOF2  --------->RVE1(1)     <---------ARR14(2)--------->ATHB12           <---------YAB1 >>LFY          <---------TOE2(3) <----------DOF2   <---------At4g35610              <----------DOF2   ttcgagtcttttggagttaagaaaatatctatctttctttgttttggatcctgtagctgttgtttaattggatttgtgagaaaatgccttttttattgtc  15177200                         <---------ICU4                         --------->ATHB12                        <---------YAB1                                                   <---------DOF5.7(2)                        --------->ICU4                                                 --------->DOF5.7(2)                      --------->YAB1                                             --------->YAB1                     --------->ICU4                                             <---------ATHB12                     <---------YAB1 --------->ATHB12                           ------->TEIL     -----        <---------At4g35610        <---------YAB1                           <---------YAB1<---------TOE2(3)        --------->At4g35610    <---------GLK1(2)                      <---------ANAC46--------->TOE2(3)   taagcttgtaatctgaatttgctatgattattagattatcattgagttcgatttgaagtgatattagagattgggtttatgaatcatgcgttaatgtaat  15177300                    <---------ZAT6                  <---------ANAC46                ---------->DOF2                  <---------ANAC58          ---------->DOF2      ---------->DOF2                  <---------ANAC58         <---------WRKY45  <----------ID1                        <- ---->ICU4  <---------AHL20(2)        --------->ZAT14    ---------->DOF2                           <-   tcttgaagcgtaatgtaattgagtgttaatgtgtattttgtatagtcaaagagaaagactaaagagccaaaggtcgatgttgtgactcttggaccatctg  15177400  Previous    Next  AGI:  At2g36145.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO15876.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74693.1) Range:  from: 15175620    to: 15176593    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g36150.1    Description:  pre-tRNA. tRNA-Leu (anticodon: TAG) Range:  from: 15176657    to: 15176736    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g36160.1    Description:  40S ribosomal protein S14 (RPS14A). Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14B) [Arabidopsis thaliana] (TAIR:AT3G11510.1); similar to cytoplasmic ribosomal protein S14 [Brassica napus] (GB:AAO41731.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) Range:  from: 15176897    to: 15178432    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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