Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <--------ATHB1                                                <------------ATHB5                                                -------->ATHB1                                                <---------ICU4                                                --------->ATHB12                                               --------->ICU4                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <---------YAB1                   <---------AHL20(2)          <---------ATHB51                   --------->AHL20(2)  --------->AHL20(2)                  --------->AHL20(2)   <---------AHL20(2)              <---------TOE2(3)    <---------AHL20(2)             --------->AHL20(2)    <---------YAB1 <---------WOX13(1)             <---------AHL20(2)    --------->AHL20(2)             --------->YAB1       --------->AHL20(2)    --------->YAB1           <---------YAB1         <---------AHL20(2)  <---------WOX13(1)                          ---        <---------YAB1<---------WOX13(1)       <---------ATHB12                                   xxx        <---------AHL20(2)---------->DOF2      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <--   gaacacaaatattattaatatttaattgaaaagtattttaattaaaccaatgattgaatgacaactgtgagaaacgttgtcgataagtttctcttggttt  15117300                                                                                              <------MYB83                                                                               <---------HSFB2a(1)                                                                   --------->ARR11(3)         <------MYB46(1)                                                                   <---------ARR11(3)        <-------                                                                  <---------RVE1(1)   <---------MYB52(1)                                <----------DOF2        --------->ATHB12        --------->HSFB2a(1)           <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------AHL20(2)    <--------P          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------AHL20(2)       <---------HSFC1(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->AHL20(2)       --------->HSFC1(2)  xx          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------AHL20(1)    <xxxxxxxxxxxxxxxxxsmallRNA(si3) ---------->DOF2 <---------MYB52(1)                   --------->AHL20(1) <---------YAB1  xxxxxxxxxxxx ------------>AGL15          ------>ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxx -------------AGL15        <-----------------AGL1xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <-------GAMYB---   ctctaaagagaaactttcccttacctctctcctcctttggacatttcttttcttattttattggtgagagattttatgagaaactcccgttggagttggt  15117400                    --------->HSFB2a(2)                    <---------HSFB2a(2)                    <---------HSFC1(1)              <---------TOE1(2)              <---------TOE2(2)             <---------STY1(1)         <------NtERF2         ------>NtERF2        <---------RAP2.3(1)        --------->RAP2.6(2)        ------>NtERF2        <---------DEAR4(2)        <---------ATERF1(1)       <---------RAP2.3(3)       <---------RAP2.3(2)                      <---------TOE2(1)       <---------ATERF1(2)                      <---------TOE1(1)       <---------DEAR3(1)                    <---------SPL7       --------->ATERF1(2)                   --------->TOE1(2)                                      -      --------->ATERF1(1)                    --------->TOE2(2)                                      <   <-----------RAV1(2) <<<<<<<ZML2          <---------MYB52(2)                               -------- <xxxxxxxxxxxxxxxxsmallRNA(i)              ------>MYB83                              ------>ZmHOX2a(2) --AtMYB61   --------->STY1(1)             ------>MYB46(1)                         <---------ARR11(3) xxxxxxxxxxxxxx>smallRNA(i)               --------->MYB52(1)              <---------TOE2(3) --------- xxxxxxxxxxx>smallRNA(i2)               --------->MYB46(3)            --------->YAB1<------ZmHOX2a(2) xxxx>smallRNA(i)   >>>>>>>ZML2  <----------ID1--------->SPL7   ----------->GT1    --------->ARR11(3) xxxxxxxxxxx>smallRNA(i)  ----------->GT1--------->TOE2(2)     --------->DAG2 --------->ARR14(2)   -- -------->HVH21     --------->HSFC1(1)  <---------MYB52(2)    ---------->DOF2 <---------ARR14(2)   --   ctgacacaggcggccctaggttctagaacggtataacgagaaaccaacgtacgacgagagaccaaaaagtaatattaacatatacgatcttacaaaaagt  15117500                                                                                          <---------DAG2                                                                                      ----------->HVH21                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC55(2)                                                                                    <---------bZIP60(2)                                                                                    <---------ANAC55(1)                                                                                    --------->O2                                                                                    <---------ANAC58                                                                     --------->YAB1 <---------O2                                                                    <---------ATHB12--------->TGA1a   --------->ATHB51                                               --------->WOX13(1)<---------bZIP60(1)   <---------ICU4                                            --------->ATHB51       --------->bZIP60(1)   --------->ATHB12                                          -------->ATHB1         <---------TGA1a  <---------YAB1                                             --------->AHL20(2)  ----------->HVH21  --------->ICU4                                            <---------ATHB51    <-----------HVH21 -------->YAB1               --------->ANAC58               <---------ATHB12   --------->ANAC46 ---------ICU4               --------->ANAC58               --------->ICU4     <---------ANAC55(2) ->DAG2               --------->bZIP60(2)                 --------->WOX13(1)  --------->LBD16 ->DOF2               --------->REM1(1)                 <<<<<<<<<<WRKY38     --------->DEAR3(1)------ ------->ICU4 --------->ALFIN1                          <<<<<<<<<<WRKY26   <---------At5g28300 ------ ------------->AGL15----------->RAV1(1)                 <<<<<<<<<<WRKY43  <-----------GT1 <---------MYB59   actcattattggaagtttggggcaacatcacaagcctacaattgcataatattctttggtcaattattcaatcaaatcaccgcgtaacgtgaccttacct  15117600                 --------->ANAC58                 --------->ANAC58                ------>MYB83                ------>MYB46(1)               --------->MYB52(1)           >>>>>>>>>>WRKY38           <---------WRKY18(1)           >>>>>>>>>>WRKY43           >>>>>>>>>>WRKY26           >>>>>>>>>>WRKY6               <---------ICU4           >>>>>>>>>>WRKY11             --------->ICU4                                 <---------AHL20(2)          --------->WRKY45            ---------->DOF2                                  <---------YAB1          --------->WRKY12 ---------->DOF2                            <-----------GT1 --------->AHL20(2)          --------->WRKY38(1)        <---------AHL20(2)              --------->GLK1(1)--------->AHL20(1) --->TOE1(3)  --------->AtMYB61    ----------->TBP                  --------->ARR14(2)<---------AHL20(1) --->TOE2(3) --------->MYB46(3)----------->GT1    ----------->TBP  *TSS     <---------ATHB12     ----   taatctaataagttgaccaacgcataaatgaaagtgtatataaagatgacttacataaacctcttagccatatatccattcattccaatataattctcca  15117700                                                                                                    <                                                                                                -----                                                                                                -----                                                                                             <-------                                                                                             --------                                                                                          --------->ALFIN1                                                                                        <---------bZIP60(2)                                                                   --------->ZAT2       --------->O2<                                                                   --------->At4g35610  <---------TGA1a                                                                   <---------ZAT2       <---------O2<                --------->ZAT2                                     <---------At4g35610  --------->TGA1a                --------->At4g35610                              --------->MYB46(3)  ----------->HVH21                <---------At4g35610                              <---------ALFIN1    =============MYC_MYB                <---------ZAT2        --------->ATERF1(1)     <---------ALFIN1       --------->DEAR3(1)         --------->YAB1               <------NtERF2           --------->AtMYB61      ------->GAMYB<--         <---------ICU4              ------>NtERF2--------->WOX13(1)     =========================bZIP_DOF        <---------YAB1               <---------RAP2.3(1)     <---------MYB55(2)     --------->DEAR3(2)     <---------YAB1     -------->P   <---------ATERF1(1)   <---------ALFIN1        --------->MYB52(1)   <-----------GT1    --------->MYB46(3)         <-------TEIL--------->MYB46(3)  <---------MYB52(2) - ----->ANAC46 <---------RAP2.6(2)   <---------RAP2.6(2) --------->PCF2   ---------->DOF2<---------ANAC46   caaaattactatcatggctgctgaacaacctctcaatggcgccttctacggtccatcagtcccaccaccagctcccaaaggctactaccgacgtgggcac  15117800             --------->ZAT2             --------->At4g35610           <---------RAP2.6(2)      <---------MYB46(3)                                                   --------->At4g35610      <-----------RAV1(1)<---------ZAT2                                   --------->RAP2.6(2) ---------ANAC58         <---------At4g35610                           <---------ARR14(2) ---->ANAC58 <---------ZAT2                                            --------->ARR14(2) ---->ANAC58 <---------At4g35610                                      <------NtERF2                -- --PCF2  <---------MYB46(3)                    --------->ARR14(2)    <---------SPL7               --- ->ZAT18--------->ALFIN1 --------->At4g35610   <---------ARR14(2)  <------NtERF2                <---- ---------ANAC58<---------ATERF1(1)           <---------CCA1(2)  <---------DEAR3(1)             <---- ---------MYB46(3)    ------>ZmHOX2a(1)     <---------ICU4      ------>ZmHOX2a(1)           --------- ---------HVH21 ------>NtERF2               --------->YAB1      <---------LBD16      ----------->RAV1(2) -------->MYB52(2) ------>NtERF2    ---------->DOF2 <---------MYB52(1)--------->ATERF1(1)   =========   ggtcgtggctgtggctgctgcctcctcagcttattcgtcaaagtaatcatatcccttattgtcatcctcggcgtagccgctctcatcttctggctcatcg  15117900                                 <---------ANAC58                                 <---------ANAC58                                <-------TEIL                        ----------->HVH21                       ------->MYC3                       <-------MYC3                      --------->TGA1a                      ====================================bZIP_DOF                      <---------O2                      ============================MYC_MYB       --------->LBD16      ------->PIF5    <---------TGA1a                          --------->LBD16      <-------PIF5    --------->ANAC55(2)         <---------WRKY18(1)                   ------>MYB46(1) --------->HVH21      <---------ANAC55(2)        --------->WRKY38(1)          ----------->GT1 ------>SPL7          --------->O2               --------->WRKY12   ----------->RAV1(1) ------>MYB83 -------HVH21         --------->ANAC46           --------->WRKY45 --------->SPL7   <-----------GT1 -----SPL7          <-----------GT1            <----------DOF2<---------LBD16<---------TOE2(3) ->CDC5           <-----------HVH21         --------->ANAC46  --------->LBD16<---------TOE1(3) ===============================MYC_MYB  -------->P    <---------ALFIN1   <---------AHL20(2)  <------   tccgacctcgtgccatcaagtttcacgtgaccgatgcgtcccttacccgctttgaccacacttccccggacaacattttaaggtataacctagccctcac  15118000                                       <---------YAB1                           ------>ZmHOX2a(2)                                                    <----                         <---------ARR14(2)                                                   -------       --------->ANAC46  --------->ARR14(2)         <---------At4g35610                      --------       --------->ANAC55(2) =========================HOX2a_HOX2a                              --------   ------>ZmHOX2a(1)    <------ZmHOX2a(1)       ------>ZmHOX2a(2)                --------------->AtSPL3   ===============================HOX2a_HOX2a<------ZmHOX2a(1)                   --------------->AtSPL8 ---ALFIN1--------->SPL7===============================HOX2a_HOX2a      ---------->DOF2     <--------   tgttcctgtccgtaacccaaacaagaggatcggactctactacgataggatcgaagctcatgcctactacgagggaaagcggtttagtaccatcacgtta  15118100                                           <---------HSFB2a(1)                  --------->SPL7                                           --------->HSFB2a(1)                ----------->HVH21                                          ------>MYB46(1)                     --------->LBD16  <----------DOF2                         ------>MYB83                        <---------SPL7 -----DOF5.7(2)                      --------->ANAC46                        --------->DEAR3(1) -->DOF5.7(2)                        --------->ANAC58                       <---------LBD16 ->TOE1(3)                --------->MYB52(1)                              --------->ANAC46         <- ->TOE2(3)             --------->ANAC46 --------->AtMYB61               <-----------GT1     <-------- -ANAC55(2)  <------ZmHOX2a(1)       --------->ANAC58              <---------YAB1        <------ZmHOX2a(1)   actcctttctatcaaggacacaaaaacacaaccgttctcacaccaacgttccaaggccaaaaccttgttatttttaacgccggacagtctaggactttaa  15118200  Previous    Next  AGI:  At2g35980.1    Description:  YLS9 (YELLOW-LEAF-SPECIFIC GENE 9). similar to NHL2 (NDR1/HIN1-like 2) [Arabidopsis thaliana] (TAIR:AT3G11650.1); similar to harpin inducing protein [Nicotiana tabacum] (GB:AAF62403.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62999.1); contains InterPro domain Harpin-induced 1 (InterPro:IPR010847) Range:  from: 15117667    to: 15118550    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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