Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                ----------->GT1                                                              <------MYB46(1)                                                              <------MYB83                                                     ----------->GT1                                                     <------MYB83   <-------TEIL                             <---------TOE1(3)--------->MYB59 ----->ARR14(2)                             <---------TOE2(3)<---------TOE2(3)                 ------ ------ARR14(2)              --------->CCA1(2)       <------MYB46(1)            <---------MYB46(3) ->ANAC46                   --------->AHL20(1)      --------->MYB59--------->ZAT6            -------- --GT1                      --------->ARR11(3)      <---------TOE2(3)        <-----------RAV1(1) ----   atatgttcatataagtgaaactgaaggaaatatatggagaaggtttaagggaattaggtttattaggttacactaacatctgtggtttgattttcacaca  14946600                        --------->ANAC58                        <---------ALFIN1                        --------->ANAC58                                                      -------  <---------ANAC58  --------->ANAC58                                                          -------  <---------ANAC58  --------->ANAC58                                               <---------TOE1(3) --->ANAC46         <---------ANAC55(2)                                 ---------->DOF2       ------- ->ANAC46 <---------CCA1(2)                          <-----------GT1--------->TOE2(3)--------->TOE2(3) ------>DOF2  <---------YAB1                      ----------->GT1 <-------TEIL     <---------TOE2(3)-   aaagccttgcctaaatctgattacgcacacatctaagtctaaatgtctaagcatgttactatcttacatacatcaaaagcatgttaatgttagtacaagc  14946700                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                           <---------ARR14(2)                                      --                                           --------->ARR14(2)                                      <-                                         --------->HSFB2a(1)                                       --                                         <---------HSFB2a(1)                                       --                                         --------->HSFC1(2)                                       ---                                         <---------HSFC1(2)                                       ---                                   ---------->DOF2                                                ---        --------->AHL20(2)    ------>ZmHOX2a(2)                                 <---------At4g35610--        <---------AHL20(2)   <------ZmHOX2a(2)                          --------->ANAC58         <---      --------->AHL20(2)    --------->ARR14(2)                          --------->ANAC46    <--------   <---------AHL20(2)       --------->ARR11(3)                          --------->ANAC58 --------->ARR11(3) -->ANAC58                  <---------ARR14(2)                          ------->GAMYB    <---------ARR11(3) -->ANAC58                  <---------ARR11(3)                    <------ZmHOX2a(2)------>NtERF2<---- -->ANAC46                 --------->GLK1(1)               ----------------------->TaNAC69(2)  <----- ---------->GT1            <---------GLK1(1)               <----------DOF2      --------->At4g35610--   cctagtaaatttatatagaagttagcaagagatccttgaaagaaggttccacagagagagtcttttcgatccaaacgccattcgctgccaatatcgtcgg  14946800      <---------LBD16  <---------ALFIN1 <------NtERF2 ------NtERF2                 <---------MYB46(3) ---------RAP2.6(3)          --------->ALFIN1 ---------ATERF1(1)        <------MYB83 ----->NtERF2             <---------AtMYB61 ------->ANAC58  --------->ETT(1) ------->RAP2.3(3)        --------->ALFIN1 --------ATERF1(1)      =====================HOX2a_HOX2a ------->RRTF1(2)<---------At1g77200 ------->RRTF1(3)<---------DEAR3(1) ------->RAP2.3(2)      <------ZmHOX2a(1) --------ATERF1(2)  <---------ANAC46 ------->ATERF1(2) <------NtERF2 ------->ANAC58<-----------HVH21 ------>SPL7<---------At4g35610          --------->LBD16 ------>RAP2.3(1)<---------RAP2.3(3)     ------>ZmHOX2a(1) ------>ATERF1(1)<---------DEAR4(1)     <---------LBD16 ------->RAP2.6(2)<---------RAP2.3(1) <------ZmHOX2a(2) ------ATERF1(1)--------->ATERF1(1)  <---------ARR14(2) ---HVH21   --------->At4g35610 ----------->HVH21 -----PCF5 --------->ALFIN1<------MYB46(1)                                                    ------- ----DEAR3(2) <-----------RAV1(1)    --------->ARR11(3)                                    --------->ARR11(3) ------->DEAR3(1)<---------DREB2C(2) --------->ARR14(2)    <---------At4g35610       ---------->DOF2   gccgccactcggggtgctgtcggcgaggatggtggtgacgatcctggagaagacagcgttaagctcatccgttgaagaagcctgaagtaaagagataatc  14946900                                                                  <---------ANAC46                                                                  <---------ANAC58                                                             =====================HOX2a_HOX2a                                                           <---------TOE2(3)                                                      <---------ETT(2)       <----------DOF2          --------->ANAC46                       --------->HSFB2a(2)         ------>ZmHOX2a(1)          --------->bZIP60(2)                    <---------HSFB2a(2)       ------>ZmHOX2a(2)        <---------ALFIN1                      ------>ZmHOX2a(1)   <---------ANAC58       <---------ZAT18                        ====================================HOX2a_HOX2a<-------TEIL       --------->ZAT18     <----------DOF2  ========================HOX2a_HOX2a         --------->HSFB2a(2) -->GLK1(2)          <-----------RAV1(1)    ------>ZmHOX2a(2)<------ZmHOX2a(1)       <----------DOF2*TSS   tggtctgagtccacctcagaacaatgtcgctttgagtccctactgatccttccaggtcgataaggatgtcgtattgatcctttactgcttctcggtccat  14947000                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              -------                        <---------TOE2(3)                                                     <------                 <---------ANAC46                                                           <--------HAHB4                 <---------ANAC58                                                           <--------                 <---------ANAC58                                                          <---------YAB1              <---------DEAR3(1)        <---------GLK1(2)                                --------->YAB1             --------->SPL7             --------->ARR14(2)                  <-----------TBP--------->ICU4           <---------SPL7               <---------ARR14(2)       ------------>CBF       <---------YAB1           <---------ZAT14         <----------DOF2              --------->ZAT6     <---------ZAT6 <----------DOF2<-----------------------TaNAC69(2)            <-----------GT1 <---------AHL20(2)<----   cttcttttacgagagtacggcgtgttaagtttgacttctttggattctcttagacttagacgattaacacaataacctatttatagagttatcataatta  14947100                         <---------YAB1                        <---------AHL20(2)                                                       <---                        --------->AHL20(1)                                               --------->TOE2(3) -->ATHB1               <---------AHL20(1)                                            <-----------GT1 ----AHL20(2)          <---------AHL20(2)                                        <---------AHL20(2) --->ATHB12            --------->AHL20(2)                               <---------HSFB2a(2)    ------ -->HAHB4              --------->YAB1      <---------TOE2(3)  <---------AHL20(2)--------->AHL20(2) ----ICU4           <--------HAHB4       ---------->DOF2  <---------AHL20(2)    <---------AHL20(1) --->ATHB51         <---------ICU4--------->TOE2(3)       --------->AHL20(2)    --------->AHL20(1) ---ATHB51         <---------YAB1 --------->YAB1         <---------AHL20(2)<------ZmHOX2a(1)   <----- -->ICU4           --------->ICU4 --------->TOE1(3)  <---------MYB52(1) --------->HSFC1(1)     <----- ---YAB1         --------->YAB1 ------->TEIL       <---------ZAT6       --------->HSFB2a(2)    ------ -ICU4 ---------->DOF2<---------YAB1     --------->MYB52(1)  <-----------GT1    <---------AHL20(2) --------CBF    <---------YAB1 <---------CCA1(2)   ----------->GT1      <---------HSFC1(1)  ---------   ttgacaaaacaaagagttatcataattatatttgaatcttaaataaaggaatactgttatttatttcatttcttctaggaaataaaatttacattaataa  14947200                                                                                           <---------                                                                                          --------->AHL20(2)     <---------ARR14(2)             <----------DOF2                                    --------->ATHB51     --------->ARR14(2)          <-----------GT1                                       <---------AHL20(2) ------GLK1(2)                  <-----------GT1                                        <---------ICU4 --->AHL20(1)              <---------AHL20(1)                                          <--------ATHB1 ----AHL20(2)              --------->AHL20(2)                                    --------->TOE2(3)--- ----AHL20(1)              <---------AHL20(2)                                <---------MYB59 <------- --->AHL20(2)          <------------------------ANAC81             <---------ARR11(3)  --------->AHL20(2) >YAB1                <---------AHL20(2)               <---------YAB1 <----------DOF2 --------->ICU4<   attctcaaatatgctaacttctatttcattttattttccttttcttctagttcattttttatagtccaatttctttttatctaacttaataatttactat  14947300                                                                   --------->ARR14(2)                                                                   <---------ARR14(2)                                                                <---------ANAC46                                                                <---------ANAC55(1)                                                      --------->HSFB2a(2)                                                      <---------HSFB2a(2)                                                    <------ZmHOX2a(2)                                                   <---------ARR14(2)                           <----             <----------DOF2                       --------->ARR14(2)          <---------ARR11(3)            --------->TOE2(3)          --------->ATHB12         --------->ANAC55(2)  --------->YAB1 --GT1   <-----------GT1               --------->ATHB51--------->LBD16         --------->ARR11(3) ------>ATHB12   <---------AHL20(2)    --------->AHL20(2)       <---------ANAC58  --------->TOE2(3) --YAB1 <-----------GT1                <---------AHL20(2)       <---------ANAC58<---------YAB1<------ ---------WOX13(1)    --------->ARR11(3)   <-----------RAV1(1)  <---------ANAC55(2)<---------YAB1   tcattgattttaaacctttttatttatcttgtgtaatcgaattatttgttgtcgatccagaaaattgcgtatcgaattcaatatcattaatggtattttc  14947400                       <------NtERF2                      --------->LBD16                                      <---------------AGL15                     --------->RAP2.6(2)                                   --------------->AGL15                     --------->DEAR3(1)                                   <---------ANAC58                     <---------ATERF1(2)                                  <---------ANAC46                     <---------RAP2.6(2)                                  <-----------------AGL1                     --------->ATERF1(2)                                  <-----------------AG                    --------->RAP2.6(3)            <---------TOE1(2)      <---------ANAC58                    --------->ATERF1(1)           <---------MYB52(1)      ----------------->AGL1        <-----------RAV1(1)                     --------->YAB1        <---------ANAC58 -------GT1<---------MYB46(3)           <---------ANAC58              <---------ANAC58              - -----GT1<-------GAMYB------>NtERF2     <---------ANAC58     <-----------GT1                   ------   tccatgttttctgttgttagaagccggccataggcgaacatggagtgccatcgtaagttctattttctatttgcttgcctgtataggttatatggaacat  14947500  Previous    Next  AGI:  At2g35590.1    Description:  pseudogene, serpin (serine protease inhibitor), putative, similar to protein zx (Hordeum vulgare subsp. vulgare) GI:19071, serpin (Triticum aestivum) GI:1885346; contains Pfam profile PF00079: Serpin (serine protease inhibitor); this is very likely a pseudogene.; blastp match of 52% identity and 2.2e-73 P-value to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein {Citrus x paradisi} Range:  from: 14945615    to: 14947000    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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