Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->ARR14(2)                                                         <-----------ARR10                                                         <---------ARR11(3)                                                         --------->ARR11(3)                                              <---------ANAC58      <---------ARR14(2)                                              <---------ANAC46     <------ZmHOX2a(1)                                              <---------ANAC58   <---------TOE1(2)                ---                                         <---------REM1(1)       --------->LBD16                  <--                                         <-----------RAV1(1)     <---------TOE2(2)               ----                                        --------->ARR11(3) ===============HOX2a_HOX2a  --------->YAB1 --------->ARR14(2)                     <---------ARR11(3) ------>ZmHOX2a(2)      --------->AHL20(2) <---------ARR14(2)              ---------->DOF2       <---------YAB1  <-----------GT1--------->AHL20(2) ->ALFIN1 <----------DOF2   <---------MYB46(3)<---------AtLEC2  <---------LBD16 ----------->GT1<-----   gactattcgcatcttttacattgttttgagttgttcaaagaagatgttgcctggtttatgatcttcccaggattcacaatgtaagtaaataaaaattcta  14879000          ------>MYB83          ------>MYB46(1)         ------>MYB83         ------>MYB46(1)         <---------ALFIN1       <---------MYB59       <---------MYB111(1)       <---------MYB55(2)       --------->MYB46(3)      --------->ANAC46 --------->AtMYB61                                                              ------>MYB46(1) ------>AtMYB61                                                   <---------ANAC58 -------ALFIN1--------->LBD16                       --------->ANAC55(2)         ------>MYB83 ----->MYB46(3)                                 ------->TEIL      <---------ANAC58--------->YAB1 ------GT1-------->P                <---------YAB1  <---------ANAC55(2)     ------->TEIL           <-   ccacctctacccaaccctgaaacgtcgtctcacaatttctgatacacatgaatcacttgatatgtttttcttaccatgaacctatcacaaaaatttcatt  14879100                                         --------------->AGL15                                         <---------------AGL15            <-------TEIL          ----- <---------At4g35610                    <-----------------AGL2 <---------HSFB2a(2)       ---------->DOF2 ----------GT1               <---------TOE1(3)                 --------->HSFB2a(2)   --------->YAB1 <   tttagcttctaacttgtggctaaaacaagttaagcttcaatttctaatattagcccattgttcttctgtaacaagtttcatttgttatcacaaaagctaa  14879200                                                                        --------->MYB52(1)                                                                        ------>MYB83                                                                      <---------MYB59                                                                      --------->AtMYB61                                                                 --------->TOE2(1)                                                                 --------->TOE1(1)    <-----------HVH21                                                               --------->TOE1(2)  <---------ALFIN1                                                               --------->TOE2(2)  --------->ANAC46 --         --------->ANAC55(2)                                 -------->P ------>MYB46(1)<---------MYB52(1)       <-----------GT1                           <-----------GT1<---------LBD16  <---------ZAT14 ----   <----------DOF2                      <---------ARR11(3)  ------->GAMYB        <---------REM1(2)<-- ------------------>TaNAC69(2)      ---------->DOF2        --------->MYB46(3)  <---------ETT(2)  ---- -----------GT1       ----------->GT1   --------->ARR11(3) <---------MYB111(2) --------->ETT(2) -----   tttttcttttcacttaattttgtctagtaaaatttttggaaagaactctattgacatttcaacaacctcggaccaaaccggtctacaccgttacagacca  14879300                                                              ----------->TBP                                                              --------->AHL20(2)                                                          <---------ANAC46                                                          <---------ANAC55(2)                                                         <-------TEIL                                                         ------->TEIL                                                       --------->TOE1(2)                                                       <---------SPL7                                                      <---------ANAC58                                                      <---------ANAC58                                                      --------->ANAC58                                                      --------->ANAC58       ----------->GT1                               --------------->AtSPL3       --------->LBD16                               <-------TEIL      --------->ANAC55(2)                            <---------TOE1(2)      --------->ANAC58                               ------->TEIL      <---------ANAC55(2)                            --------->SPL7      --------->ANAC46                             <---------SPL7      --------->ANAC58                            <---------ANAC58      --------->ANAC55(1)                         <---------ANAC55(1)     <---------LBD16                              --------->ANAC55(2)   --------->ARR14(2)                             <---------ANAC55(2)   <---------ARR14(2)                    --------->ZAT14 <---------TOE1(2) ------->YAB1                            <---------ZAT14 <---------TOE2(2)     --------->TOE2(3) -->MYB46(1)                         <---------ICU4--------->TOE2(2)     --------------->AtSPL8 -------ATHB12                  --------->AHL20(2)<---------ANAC46       <---------------AtSPL8 -->MYB83 --------->GLK1(1) <---------AHL20(2)    <---------ANAC58   <---------TOE2(3)             *TSS ---->WOX13(1)              --------->AHL20(2)   <---------------AtSPL3 <--------P               ----   atcaaaatacggaaattcaaatctatgtattaaaaaaaatcactacagaattacgtacgtacgtataaatagaggttagtacattaatcggcgaaaaaac  14879400                                         --------------->AtSPL8                       <---------ANAC58                                       <---------MYB52(1)                             <---------ANAC46                                    <------NtERF2                                     ---------------                                   --------->MYB52(1)                                 <---------ANAC58                                   ------>NtERF2                        --------->ARR14(2)                                  <---------ALFIN1                      <---------ARR14(2)             ------>NtERF2        --------->DEAR3(1)               <---------MYB52(1) <---------RAP2.6(2)         --------->ARR14(2)      <------NtERF2                    <---------SPL7 <---------ANAC58  <-         <---------ARR14(2)      --------->ATERF1(1)             --------->DEAR3(1)  ---------->ID1<-         --------->GLK1(2)      <---------ATERF1(1)            --------->LBD16   <---------ANAC58  --   <---------ANAC46            --------->ANAC58                ------>NtERF2------>ZmHOX2a(1)   <---- ----->TOE1(2)                 --------->ANAC58         <-------TEIL --------->MYB52(2) <------NtERF2   attcgacgtagaatccgccttcggagacttgagtcgccaccggtgagtacttcttcgatacattccgccgttcgtttcctcttacttggcgtcttggggt  14879500                                                             ------>ZmHOX2a(2)                                                            <<<<<<<<<GATA-2                                                            <<<<<<<<<GATA-3                                                            <------ZmHOX2a(2)                --------->YAB1                              <<<<<<<<<GATA-1               <---------ATHB12                             <<<<<<<<<GATA-4              ------>MYB83                                 <---------ARR11(3) -->AGL1      ------>MYB46(1)      <---------ARR11(3)      --------->ARR11(3) --------HSFC1(2)                 <---------ZAT2           <---------AGP1               <---------TOE1(3) --------At4g35610         ------>ZmHOX2a(1)   <---------HSFB2a(2)                 <----------DOF2 ------->HSFC1(2) <---------YAB1  <---------At4g35610     <---------CCA1(2) --------->TOE2(3)  <----- ----P--------->YAB1    ------>ZmHOX2a(1)      --------->HSFB2a(2)       <-----------GT1<---------TOE2(3)   aagcttcttcataacctatcatcatcctccttctccagctcttcgagtttcagaaaacctagatctctaagtttttatccctaatcttttagggtttcta  14879600                                                             <---------DAG2                   --------->ATHB12                       <-----------------AG                   --------->AHL20(2)                     ---------->ID1                   <---------AHL20(2)                <---------HSFB2a(1)                   --------->ATHB51                  --------->HSFB2a(1)                  <---------AHL20(2)           --------->LBD16         --------->KAN4(2)                    <---------LBD16<----------DOF2       <------ZmHOX2a(2)             --------->GLK1(1)<----------DOF2               --------->ARR14(2)       <---------ATHB12  ---------->ID1      ----------->RAV1(2)       <---------HSFB2a(2)     ------ ------GT1        --------->ICU4<---------LBD16------>ZmHOX2a(1)  <---------MYB46(3)--------->ZAT14   ccttgttcgatcattctgaaattatttgtcttctctcggaattcaattcctggggactttctcctttttggttagagaagtttatgtatactctctaact  14879700                                                                                    <---------YAB1                                                                              <------MYB83                                                                              <------MYB46(1) -------                                                                              <---------MYB46(3)<----                                                                             <---------AtMYB61-------                                                       --------->GLK1(2)    <--------P   <---------ZAT14                                                      <---------GLK1(1)   --------->ALFIN1    <------       ------->TEIL                          --------->YAB1               <---------ANAC46    <------      <---------CCA1(2)                     <---------YAB1           <---------ANAC58 >>>>>>>>>ARR1 <-----------RAV1(1)            <---------AHL20(2) --------->YAB1    <---------ANAC46 >>>>>>>>>ARR2 --->ZAT6             --------->ATHB12    <---------At4g35610        <---------ANAC58--------->ATHB12   ctactgttgtatctctgaaacaagtgatttgaaatttatagctcttctgataatcgaaatctgtgttgatttcgtggtgttggtttatgattgtagtgca  14879800                                                                                     <---------ARR11(3)                                                                                     <-----------ARR10                                                                                     --------->GLK1(2)                                                                                --------->ZAT18                                                                                <---------ZAT18                                                                                --------->ZAT14                                                                             <---------ANAC58                                                                             <---------ANAC46                         --------->ZAT2                                      <---------ANAC58 -->ZAT14                ----------->RAV1(2)                    <-----------GT1 <---------ZAT14 -----ANAC46   <--------ATHB1                    --------->ARR14(2)       <-----------RAV1(1) -->ZAT18      --------->ATHB12                  <---------ARR14(2)     --------->At4g35610 ---ZAT18     --------->ICU4                   <---------MYB46(3)       --------->ZAT14<---------MYB59 ---ZAT14     <---------ATHB12    <---------ANAC46          <----------DOF2<-----------HVH21       --   gtgagaatggggagcaatgatttgaacacctgggtttcggacaagttgatggttctgctaggcttttcacaaactgctgtcgtgcagtatctaattgcaa  14879900  Previous    Next  AGI:  At2g35330.1    Description:  zinc finger (C3HC4-type RING finger) protein-related. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G32530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63430.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 14876068    to: 14879019    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g35340.1    Description:  MEE29 (maternal effect embryo arrest 29); ATP-dependent RNA helicase. similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT4G16680.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64476.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ74568.1); similar to RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01767.1); contains InterPro domain Region of unknown function D Range:  from: 14879399    to: 14886818    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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