Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->YAB1                                                     <--------HAHB4                                                     --------->YAB1                                                   ------->TEIL  --------->At4g35610                            ---------->DOF2    <---------TOE2(3)--------->GLK1(2)                   --------->At4g35610  <----------DOF2 <---------ICU4                    -----------                 <---------ICU4         <---------DAG2 --------->ICU4                 <-----------GT1                 --------->YAB1       <---------ZAT2<---------YAB1             --------->LBD16 <-------TEIL --------->WOX13(1)     <---------TOE1(2) <---------YAB1         --------->LBD16   atatacattcactggtccatcatcagaaaccaaagttcccagcttttttgatgtatcattattcataatctgccctcttccctgaatataacaagttaaa  14875500                   --------->WOX13(1)                --------->TOE2(3)               --------->REM1(1)         <------ZmHOX2a(1)                   --------->ANAC58     =================================HOX2a_HOX2a                            --------->ANAC46    --------->ARR11(3)          --------->ARR14(2)                           --------->ANAC58    <---------ARR11(3)          <---------ARR14(2)                          <---------At5g28300   --------->GLK1(1)           <------ZmHOX2a(1)          --------->GLK1(2) <---------LBD16 >GT1<------ZmHOX2a(2)     ---------->DOF2   ----------->RAV1(1)--------->YAB1    --------->At4g35610   accagagatcacatcttacatcaatcgacaaaaggattcagtaggagcaacaaaattgagaatcgatgagaactcattcacggcatctacattggctact  14875600                             >>>>>>>>>GATA-3                             >>>>>>>>>GATA-1                             >>>>>>>>>GATA-2                             >>>>>>>>>GATA-4                --------->YAB1                <-----------RAV1(2)                         ----------->GT1           <----------DOF2               <---------ATHB12                    <---------ARR14(2)   --------------->AGL15             --------->WOX13(1)                   <------NtERF2         <---------------AGL15       <---------YAB1    ------->MYC2            --------->LBD16       ----------------->AGL1     --------->YAB1      <-------MYC2           <---------ANAC46       ----------------->AG ---------     <---------ICU4      ------->MYC3          <---------LBD16         ----------------->AGL3    --------->ICU4 <------ZmHOX2a(1)       <---------AtLEC2 <----------ID1 ---------->DOF2  <--------    <---------ATHB12     <-------MYC3     <-------TEIL  ---------->DOF2----------------->AGL2   aattcaatgatgaaacaatcaggagcatgtggattgaattgagtttcatggcggaaacaaaagcgataaaactcccaaaaagagcaaacttttcagcaaa  14875700                                        --------->MYB52(1)                                   <---------YAB1                           --------->ANAC46                           --------->ANAC58                                           ===============                           --------->ANAC58                                           <------ZmHOX2a(2)                          ------>MYB46(1)                     <---------AHL20(2)    <---------At4g35610                        --------->TOE2(2)                 --------->AHL20(2)        --------->At4g35610                        --------->TOE1(2)<---------TOE2(3)<---------AHL20(2)   <----------DOF2               XXXXXXXXXXXXXXXXXXXX>MIR1887  --------->GLK1(2)--------->AHL20(2)<-----------HVH21  -- >At4g35610  --------->ANAC46    <-----------GT1         <---------AHL20(2) --------->ARR11(3)   <--- -At4g35610<-----------GT1------>MYB83  <-----------GT1  --------->AHL20(2) <---------ARR11(3) <-----   cccatgactaatttcactaaacaaaacctacgaaattacgattaacgattctaggtgaatttaatttaacaaaaatgagaactttcagatcaaacgagga  14875800                                                       <---------YAB1                                                    --------->ARR14(2)                                                    --------->GLK1(2)                     --------->At4g35610                                                    <---------ARR14(2)                    <---------At4g35610                                                   <---------ARR14(2)                     <---------ZAT2                                                   --------->ARR14(2)                     --------->ZAT2                                                ----------------->AGL1               <---------LBD16                                               <---------At4g35610                <---------ZAT2                                               ------>NtERF2                      --------->GLK1(1)                                              --------->DEAR3(1)                  <---------At4g35610                                             --------->ATERF1(1)                  --------->ZAT2-----                                            <---------At4g35610       XXXXXXXXXXXXXXXXXXX>MIR157D           --------->ZAT6               --------->TOE1(2)            XXXXXXXXXXXXXXXXXXXX>MIR157A-C =HOX2a_HOX2a                           --------->TOE2(2)<---------MYB52(1) --------->CCA1(2)   ----- ------->YAB1             --------->TOE1(3) --------->At4g35610    <---------WRKY18(1) --------->LBD16 ------WOX13(1)           --------->TOE2(3) <---------ATERF1(1) <------ZmHOX2a(1) --------->At4g35610 -ZmHOX2a(1)  ---------->DOF2          ----------->RAV1(2)   <------ZmHOX2a(1)    <---------GLK1(1)   ttgataacagataacacaaagttcaaaacctaaaaaacaatacctgcgctgccgattccgataggaggatgaccaaagatagagagctccggagctaagt  14875900                                                         <---------ANAC46                                                        <------NtERF2                                                       ------>NtERF2                                                      --------->DEAR3(1)                                                      <---------DEAR3(1)                                                      <---------ANAC46                                                     --------->ATERF1(1)                                                     --------->RAP2.3(1)                                                     <------NtERF2                                                     ------>NtERF2                                                    <---------ATERF1(1)                                                   <---------DEAR3(1)                                                  <-------MYC3                                                  ------->MYC3                                                 --------->ANAC58                                                 <---------TGA1a                                                 ==================================================bZIP_DOF                                                 <---------ALFIN1                      <------ZmHOX2a(2)          --------->O2                     <---------ARR11(3)          <---------O2                     --------->ARR11(3)          --------->TGA1a       <---------ANAC58                          --------->ANAC58                       ---------->DOF2       <---------ANAC58        ---------->DOF2   --------->ANAC46 <---------YAB1       <---------AHL20(2)       <---------ANAC46        ============================bZIP_DOF      --------->At4g35610       <---------ANAC55(1)   --------->ANAC58  <---------ALFIN1 --------->YAB1    ----------------->AGL3       <---------ANAC55(2)   --------->ANAC58----------------->PIF3(1)   <---------At4g35610      <-------TEIL  --------->YAB1          --------->ANAC58  <---------ANAC46    ------------>CBF ------>TGA1     ---------->DOF2       *TSS --------->ANAC58  ----------->GT1   ------>NtERF2       < ------>HVH21    ==========================================bZIP_DOF    <-----------GT1 --------->AHL20(2)   gacgacgatgcgtgtgtttcaaagatcacagacgaaagtaaacagcgagccacgcggcgtcgtttagtataatttagctctcggcccaattaaaggccca  14876000                        --------->ANAC46                    --------->AtMYB61                   --------->MYB46(3)                 --------->ANAC46                 --------->ANAC58                 XXXXXXXXXXXXXXXXXXXX>MIR841B                 --------->ANAC58                 XXXXXXXXXXXXXXXXXXXX>MIR841               --------->ANAC46               --------->ANAC58                             <---------WRKY18(1)               --------->ANAC58        <---------ANAC58    ----------->HVH21         <-----------HVH21             <---------ANAC58  <---------ANAC58        ------->GAMYB----------->RAV1(1)                 <---------ANAC58       --------->MYB46(3) <---------GLK1(2)      <-----------GT1    *TSS ---------YAB1 <---------ALFIN1    ---------->DOF2       <---------AtLEC2        ------>ZmHOX2a(1)   ttatgttcaacagtcacacacaccaccagaaactgaagaaagcttgttttttttctcttgcatgacccttcgcttctcttctcctctcttctctaccgaa  14876100                           ------->GAMYB                         <---------At4g35610                                      <--------HAHB4                         --------->At4g35610            ------->TEIL              <---------ICU4            ----------->RAV1(2)                         <---------ARR14(2)        --------->YAB1            <---------ZAT2--------->MYB46(3)            <---------ARR11(1)     --------->YAB1            --------->ZAT2<------------AtMYB77          --------->ARR14(2)   <---------WOX13(1)            <---------At4g35610                        <---------CCA1(2)   --------->ATHB12      ----            --------->At4g35610       --------------->AtSPL8   --------->GLK1(2) <---------ATHB12----          <-----------RAV1(2)    <------ZmHOX2a(2)     <---------ARR14(1)<---------WOX13(1)   -------   gtttgattcttctcagctgagaaatacaactgccgatcagtaagtacttctaaactcgtatctataatctgtaagattgattaatcattttgccatcaat  14876200                      <----------DOF2                   ------>ZmHOX2a(1)                       ------>ZmHOX2a(2)                 ------>ZmHOX2a(2)                       <---------ARR11(3)               --------->ARR14(2)                        --------->ARR11(3)      <---------CCA1(2) <---------AtMYB61               --------->YAB1 ----->YAB1----------->RAV1(2)                         <---------ATHB12 ----->AHL20(2)<---------ARR14(2)                <---------ARR14(2)<----------DOF2        <----------DOF2 -->WOX13(1) ------>ZmHOX2a(1)              <---------ANAC46     <---------DAG2        <-----------GT1   taaaacccatttctcctgatcctgctttggtttttgtgtttcatttgtggggattcaatgatcttcactctttcaatctctgtggaatttttcttttcct  14876300                                                                                        <---------ANAC46                                                                                        <---------ANAC55(2)                                                                                        <---------ANAC58                                                                                        ----------->GT1                                                                                        <---------ANAC55(1)                                                                                       <-------TEIL                                                                                       ------>ZmHOX2a(2)                                                                                     <---------GLK1(2)                                                                                     --------->ARR14(2)                                                                                     <---------ARR11(3)                                                                                     --------->AGP1                                                                             --------->SPL7                                       <---------ANAC58                    --------->LBD16          <                                 ----------->HVH21                       <---------LBD16<---------ANAC58             <-------TEIL     --------->ZAT6                           --------->MYB52(1)--------->LBD16  --------->GLK1(2)      <----------DOF2       <-----------HVH21       ------>MYB83----------->ARR10- <---------ARR14(2) <---------ANAC58   <---------ANAC46                ------>MYB46(1)--------->CCA1(2) --------->ARR14(2) <---------ANAC58   <---------ANAC58              --------->AtMYB61<------ZmHOX2a(2) <---------GLK1(2) --------------->AtSPL3     <---------ZAT6         <---------MYB59 <---------ARR14(2)   tcagattctcatatatacatagacgtgctttaactctgatgggttgtactgtgagggagaagcatgttagaccaaaccggaagaccagatccgtgaaacc  14876400  Previous    Next  AGI:  At2g35320.1    Description:  ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG); protein tyrosine phosphatase, metal-dependent. similar to unnamed protein product [Vitis vinifera] (GB:CAO63433.1); contains InterPro domain EYA; (InterPro:IPR006545) Range:  from: 14873911    to: 14875939    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g35330.1    Description:  zinc finger (C3HC4-type RING finger) protein-related. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G32530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63430.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 14876068    to: 14879019    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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