Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------TOE2(3)                                                                            <---------YAB1                                                                    <---------ARR14(2)                                                                    --------->ARR11(3)                                                ------->GAMYB       <---------ARR11(3)                         <-------TEIL          --------->ANAC46     --------->ARR14(2) ------->ID1    ----------->GT1        <---------TOE2(3)            <---------GLK1(2)      <--------- --DOF2 --------->AtLEC2<-----------GT1<---------YAB1      --------->MYB46(3)--------->YAB1<---------DAG2   gttctcatccatgcacaatagtatatatacgttttagcattaacattcaacgcagaaaataacaaacacagattttctataataaacgtttagctttttc  14847300                                                                                                  ---                          ------->TEIL                                      ---------->DOF2       ---                <---------ANAC55(1)                              ----------->GT1                  ---                <---------ANAC46                             <---------AHL20(2)                <-----           <---------------AGL15                            --------->AHL20(2)   --------->LBD16  ---           --------------->AGL15                  --------->TOE1(3)      --------->TOE1(3) <-------TEIL -DOF2    ----------------->AGL1                  --------->TOE2(3)      --------->TOE2(3)--------->CCA1(2)   atcagtttcaataccattaagtgtaatgcatttaagtaagaaccaatagaacccttaacatataaaattgaaaaacctaaaaccggcaatagatacatac  14847400                                                                                            <--------                                                                                           <---------At4g35610                                                                                       <---------ANAC55(2)                                                   ----------->GT1                     --------->ANAC46                                              --------->AHL20(2)                       --------->ANAC58                                 <---------ICU4    <---------ZAT6                  --------->ARR11(3)                           --------->TOE2(3) <---------ATHB51                     --------->YAB1                           --------->TOE1(3) <---------ATHB12                     <---------ICU4    -                   <---------ZAT18       ============================================================ ------>ANAC46     --------->ZAT18       --------->LBD16                         <---------ATHB12   < ------>ANAC58     --------->ZAT14       ----------------->AGL3                  --------->ICU4  ---- ------>ANAC58     <---------ZAT14      --------->ANAC46                   --------->ANAC46<------NtERF2 --TEIL        <---------------AtSPL8<-----------GT1      --------->ARR11(3)   --------->YAB1   <---- ------>ANAC55(1)--------->ZAT14--------->ICU4--------->YAB1       ------>ZmHOX2a(1)   --------->ANAC58   acgcaagtgataagaacagagtacacaaaccctaatttttatccccaattatagagtaaacatctagtcctcgttacacaacaatgatcacgcagcgtat  14847500                                                                                           ------->TEIL                                                                                         <-------PIF5                                                                                         <-------PIF4                                                                                         <-------MYC3                                             <---------AHL20(2)                          ------->MYC3                                             --------->AHL20(2)                          <-------MYC4                                  --------->ANAC58                                       ------->PIF5                                  --------->ANAC58                  --------->YAB1       ------->MYC4     <-----------GT1            --------->CCA1(2)                   <---------ICU4       ------->MYC2 <---------AHL20(2)             <---------GLK1(1)                  <---------ATHB12      <-------MYC2 --------->AHL20(2)             --------->GLK1(1)                 ------>MYB83           ------->PIF4 -ANAC46                       <---------ARR14(2)          --------->ANAC46             --------->TGA1a -------->AHL20(2)             --------->ARR14(2)          --------->ANAC58             <---------TGA1a ====================================MADS_MADS<---------YAB1 <------ZmHOX2a(1)          ============= ---------AHL20(2)       <---------AHL20(2)  <---------AHL20(1)   ------>MYB46(1)      ------->TEIL ----->ATHB12        --------------->AGL15  --------->YAB1 --------->ANAC58            ------------>OsbHLH66 -----YAB1  <-----------GT1   <------ZmHOX2a(1)     <---------HSFB2a(2)               <------------OsbHLH66   gatttatttacgaattacgacctctatttataggatatgcaatccattataattctggtacaaggaccaatcttcacaagactcatatgcacgtgcctta  14847600                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                              <------NtERF2                                                                                              <------                                                                                             <-------                                                                                           --------->RAP2.3(1)                                                                                           --------->ATERF1(1)                                                                                         <---------RAP2.3(3)                                                                                         --------->ALFIN1                                                                                        --------->ATERF1(1)                                                                                       xxxxxxxxxxxxxx                                                                                       <---------MYB46(3)                                                                                       <------MYB83                                                                                       <------MYB46(1)                                                                                       xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      --------->ALFIN1                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <---------DEAR3(1)                                                                                      <---------AtMYB61                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                 --------->AHL20(2)   xxxxxxxxxxxxxxx                                                          --------->DOF5.7(2)         *TSS <------NtERF2                                                         --------->TOE1(3)          <---------ANAC58                                                         ----------->GT1            <---------ANAC46                                                         --------->TOE2(3)     <------------CBF -----                    <---------ICU4               --------->ARR11(3)  <---------ATHB12 xxxxxxxxxxxxxxx            ------->GAMYB                    ---------->DOF2     <---------AHL20(2) <---------ANAC58          --------->At4g35610            <---------YAB1 ----------->GT1--------->WOX13(1)<---------DEAR3(1)          <---------At4g35610           --------->SPL7 <---------TOE2(3)    ------------>CBF<--------   <---------YAB1   --------->YAB1  --------->ZAT6--------->CCA1(2)  ------------>CBF xxxxxxxxxxxxxxx ===================MYC_MYB      --------->ETT(2)<---------ARR11(3)--------->WOX13(1)<---------ABI4(1)   gcactctgattcaactccctaaacatgacttcttgtcaacagtacgataaagatataaacgttaaatataaatcaattagcaattggggtggtggcgcag  14847700     <---------ANAC46     <---------ANAC58     <---------ANAC58 <---------ANAC58 <---------ANAC58 ------MYB52(1) ---->At4g35610 ---GAMYB  <------MYB83 -----At4g35610 -----ZAT2 <------MYB46(1) -----RAV1(2) --ZAT18  <---------AtMYB61 xxxx>smallRNA(si3)                                           --------->ANAC58 xxx>smallRNA(le3)                                            --------->ANAC58 xxx>smallRNA(si3)                                            --------->ANAC46 xxx>smallRNA(se3)                                     xxxxxxxxxxxxxxx>smallRNA(le3) xxxx>smallRNA(si3)                                    xxxxxxxxxxxxxxx>smallRNA(si3) >smallRNA(se3)                              xxxxxxxxxxxxxxx>smallRNA(si3) xxx>smallRNA(fl3)                       --------->ETT(2)   <---------ALFIN1 >smallRNA(le3)                       xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(se3)                  <---------AtMYB61xxxxxxxxxxxxxxx>smallRNA(le3) x>smallRNA(s)                      xxxxxxxxxxxxxxxx>smallRNA(le3) xxxx>smallRNA(le3)                 xxxxxxxxxxxxxxx>smallRNA(si3) xxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxx>smallRNA(le3)          <---------AHL20(2) >smallRNA(fl3)                     xxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ATHB12 ---->ZAT2<---------TOE1(2)        ------>ZmHOX2a(1)  xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(se3)          ------>ZmHOX2a(2)    xxxxxxxxxxxxxxxx>smallRNA(le3) -ANAC46 <--------P              ----------->RAV1(2) xxxxxxxxxxxxxxxx>smallRNA(s)                  <- x>smallRNA(i)                 --------->ARR11(3)xxxxxxxxxxxxxxx>smallRNA(le3)                 <-----   ttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccattcattttttatttctaacatctgttttta  14847800                                                              <------MYB46(1)                                                             --------->MYB46(2)                                                             --------->MYB59                                                             --------->MYB111(2)                                                             <---------MYB46(3)                                                             --------->MYB111(1)                                                             <---------------AtSPL8                                                             --------------->AtSPL8                                                            <---------MYB55(1)                                                         <---------YAB1                                                       --------->YAB1                                                      <---------YAB1                                                     --------->AHL20(2)                                                     --------->AHL20(1)                                                     <---------AHL20(2)                                                    --------->YAB1                                                    <---------ICU4                                                   <---------YAB1                                   -                                                   --------->ICU4                  --------->YAB1  --          ----------->GT1                        <--------HAHB4                  <-----------GT1   <-        <---------ZAT18      <---------AHL20(2)  --------->YAB1          ---------->DOF2       ------ --------AHL20(2)            --------->AHL20(2) <---------YAB1<------MYB83--------->DAG2   ---------- ----AHL20(2)          --------->YAB1         --------->YAB1<--------P--------->YAB1    <---------ANAC55(2)   tttttttttgtgcagataaaacaaaacataatttataaaactgtgcaactataattataatggtaggtactataaaaaagttttttcatcacctaaagaa  14847900                                                                            --------->ATHB12                                                                           <---------YAB1                                                                           --------->ICU4                                                                         <---------ICU4                                                                       <---------YAB1                                                                      <---------AHL20(2)                                                                      --------->YAB1                                                                 <---------YAB1    <---------AHL20(2)                                        --------->AHL20(1)    --------->AHL20(2)                                        --------->AHL20(2)       <---------ARR14(2)    <---------YAB1                           ------->TEIL     <---------AHL20(2)       --------->ARR14(2) -------->CCA1(2)                         --------->ANAC55(2)<---------AHL20(2)       ------>MYB46(1) ------->ARR11(3)               --------->MYB52(2)       <---------YAB1<---------TOE2(3)       <----- --------ARR11(3)      <----------DOF2    <---------ANAC55(2)--------->AHL20(2)       ------>MYB83 ---->DOF2         ---------->ID1<-------GAMYB   <---------TOE2(3)    --------->AHL20(2)     -------- >DOF2         <----------DOF2  <---------MYB46(3)   ----------->GT1<---------YAB1  <---------MYB59 -   agatatataattgttttctttttctcttttttgtttgttgaaatatgtatttatgtagtataattttattattaatattgattagaccaaatccattata  14848000                                                                            --------->ATHB12                                                 --------->YAB1            --------->AHL20(2)              <---------AHL20(2)            <---------AHL20(2)             <---------AHL20(2)              --------->AHL20(1)            --------->AHL20(2)          --------->ARR11(3)              <---------AHL20(1)        --------->AHL20(2)              <---------ARR11(3)              --------->AHL20(2)     --------->YAB1                     <---------GLK1(2)           <             <---------ATHB12        -------->HAHB4                     <---------ARR14(2)        <--      <-----------GT1                <---------ICU4                     --------->ARR14(2)       <xxx    <---------ATHB12                --------->ICU4                    <---------TOE2(2)         ----- ----YAB1    --------->AHL20(2)     <---------YAB1 <---------YAB1 <---------TOE2(3)            <xxxxx ->YAB1 --------->ANAC46            <---------ATHB12             --------->MYB52(1)           xxxxxxx -------->AHL20(2)      ---------->DOF2<---------YAB1       <---------TOE2(3)       --------->AHL20(2)   aattcaataaacccaataaattgaagaaaagaaatgaaatgattatttaaatgataatggataagattaacgcagattttattggataaaatcgtcgtca  14848100                                <---------ANAC58                                <---------AtLEC2                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      ------>ZmHOX2a(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            -----------  <-----------RAV1(1)--------->TOE1(3)                        <-----------ARR10          <---------TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       --------->TOE1(3)--------->ARR11(3)    --------->ATHB12 ----------DOF2      --------->TOE2(3)       --------->TOE2(3)<---------ARR11(3)    <---------MYB46(3) -------ATHB12  <---------MYB52(1)          ========================================================= xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          ----------------->AG                  --------->At5g28300 ---->WOX13(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->AHL20(2)      ----------->GT1 xxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ANAC46     --------->ARR11(3)       --------->MYB52(1) xxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC58 ---------->DOF2<---------MYB59  ------->GAMYB-------   atctttgttgttcatacagttatcctcaaattttgcatgtaatcttaccttaaaagaaattgaatatctaactcttaatccaacggtgattagggtaaaa  14848200  Previous    Next  AGI:  At2g35220.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 14847686    to: 14847723    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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