Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ZAT2                                                                <---------ZAT2                                                                --------->At4g35610                                                                <---------At4g35610                                                                --------->ZAT14                                     --------->YAB1           --------->ANAC46                                  --------->GLK1(1)  <---------YAB1                            --------->GLK1(2)    ------>ZmHOX2a(2)                            --------->ARR11(3)  <------ZmHOX2a(2)           ----------->GT1  --------->ARR14(2) <---------ARR11(3) <-------TEIL               <---------ARR14(2) <---------ARR14(2) --------ARR14(2)           <---------ARR11(3) --------->ARR14(2)                                  <- ------->ARR14(2)    --------->At4g35610       --------->ARR11(3)        <---------ARR11(3)  -------- --------GLK1(2)  *TSS ----------->GT1 ---------->DOF2      --------->ANAC46                 <-------   agattcagaaacaatgtaaaatgggctgaaaatctgaaatcaaaagagggatcttatgattcacacagcagacaacatctcatgctatgaagcatttatt  14837300          --------->ANAC58          --------->ANAC58                 --------->STY1(2)       <---------MYB52(1)          --------->ANAC46                --------->ANAC58        --------------->AGL15          <---        ---------->DOF2    <---------MYB52(1)                     --------->TOE2(3)              ---- --------AtLEC2           <---------RAP2.6(3)                     <---------------AGL15          <--- ->AHL20(2)   --------->ANAC58            --------->ANAC58       ----------------->AGL3          <--- --AHL20(2)   --------->ANAC58 <---------AHL20(2)        <-----------GT1<---------AHL20(2)       ----   tgaatgaactaaaagcaaggatttaggccgtttttatttgggccaagctagatgacattatacacttcccttaattagttgaattcggtttttcttaagt  14837400                                                                                                    -                                                                                                    -                                                                                   --------->AHL20(2) <---------DAG2                                                                    <---------AHL20(2) <----------DOF2    ------>ZmHOX2a(1)                                           --------->YAB1      < ------ZAT18       <---------MYB59                                         ----------->GT1      <---- ----->ZAT14     ---------->ID1                                         <---------MYB52(1)   -------- ------ZAT14    <------------------------ANAC81                    <-----------GT1--------->AHL20(2)< ----TEIL <-----------GT1                          <---------GLK1(1)<---------At5g28300 <-----------GT1 ----->ZAT18 <----------DOF2                       --------->GLK1(1)--------->MYB52(1)<---------AHL20(2)   acactttttttttttctttgtcctaatttttcttattttcaaatttagtttggatttcgatttttgcatttaccggtttgtataataaataaacgattct  14837500                                                    --------->ZAT18                                                    <---------ZAT18                                         -------->ATHB1                                         -------->HAHB4                                         <---------AHL20(2)                                         --------->ATHB51                                         <---------ICU4                                         --------->YAB1                                         <--------HAHB4         <------ZmHOX2a(1)              <---------YAB1   <---------TOE2(3)                    --------->ICU4                                --------->YAB1 <---------AHL20(2)                     <---------ATHB51                             <---------YAB1 -------->AHL20(1)                   --------->AHL20(2)                            --------->YAB1 -------->AHL20(2)                   --------->AHL20(1)                   ---------->DOF2      <----- ---------AHL20(1)        <---------ANAC58    <---------YAB1   <---------AHL20(2) --------->ICU4 -----YAB1                <---------ANAC58  --------->YAB1    <---------AHL20(2)  <---------ATHB12 ->GLK1(2)    ---------->DOF2        <---------AHL20(2) <----------DOF2  <---------AHL20(2)   <------ ---------AHL20(2)        <---------ANAC46 <---------YAB1     --------->AHL20(2)--------->WOX13(1) <-   aatttaatgaaggactgaaagttttgtttcgttttcgaattaattattatgatgtgctctttattttaatttcatttaaagtcaattatcaaaattaagc  14837600                                              <-----------HVH21                               <------                                             --------->ANAC58                                 -------                                             --------->ANAC58                                 <------                                  >>>>>>>>>>WRKY26                                           <-------                               --------->At4g35610                                           --------                        ------>ZmHOX2a(2)   --------->SPL7                                   --------                       <------ZmHOX2a(2)    <---------TOE1(2)                                <-------                       --------->CCA1(2)  <---------SPL7                                    <------NtERF2                      <---------ARR14(2)  --------->TOE1(2)                                 ---------                      --------->ARR14(2)  --------->TOE2(2)                                <---------MYB46(3)                      <---------ARR11(3) --------->YAB1                                   <---------ANAC58                      --------->AGP1    --------------->AtSPL3                            <---------ANAC58                      <---------AGP1------------>CBF                                      <---------ANAC46                      --------->ARR11(3)<---------ATHB12                                 <------NtERF2                     <---------CCA1(2) ------>MYB83                                    --------->ALFIN1                 <-----------HVH21>>>>>>>>>>WRKY38 --------->LBD16                   <---------ANAC46              <---------ARR14(2)  >>>>>>>>>>WRKY43 <---------TOE1(2)                 <---------O2         --------->ALFIN1      <---------At4g35610 <---------TOE2(2)                 <---------bZIP60(2)   ---------->DOF2  ----------->ARR10  ------>MYB46(1)                       --------->MYB52(1)  <--- ----At4g35610--------->ARR14(2) ----------->HVH21<-----------RAV1(2)<---------ALFIN1<---------ANAC58 ---TOE2(3)--------->ALFIN1   <-----------------------TaNAC69(2)     --------->ZAT6  <---------ANAC58 --------TOE2(3)------>ZmHOX2a(2)--------->WRKY38(1)          --------->GLK1(1)    <-----------HVH21   taatgtaaagagtgtggatcgtcagatctggagaggtgaccaatcgtacgtcccaggttatatgagttccaacactgacaaacgatgtcgtggcgggtcc  14837700     *TSS   <----------DOF2 ---TCP15(1) -->PCF2                                 ---------->ID1 ---TCP20 ----------->HVH21            <---------ANAC58 --ARR14(2)                --------->ARR11(3)                                     --------->GLK1(1) ->TCP15(1)                <---------ARR11(3)                                     <---------GLK1(1) ->ARR14(2)<---------DOF5.7(2)         <---------ANAC58            --------->AHL20(2) --PCF2  --------->DOF5.7(2)--------->RVE1(1)                      <---------AHL20(2)  --------->LBD16 >ATERF1(1)---------->DOF2 --------->GLK1(2)                 ----------->GT1  --------->HSFB2a(2) ------ALFIN1             <---------GLK1(2)             <---------ATHB12   <----------DOF2   cactggttttcggtaacgcagtttttcaaaatctctcattttcgtcccttcgagccaaatcaatggcaaaaaattagcttttagaattccccaagaacaa  14837800                                                      <---------ANAC46                                                     --------->ALFIN1                                                    <---------ZAT14                                                   --------->ALFIN1   ------->PIF5                                                   <---------REM1(1)  ------->MYC3                                                 <---------ANAC46     ------->MYC2                                            --------->GLK1(2)         <-------PIF5                                            <---------ARR14(2)        <-------MYC3     <---------ARR11(3)                                            --------->ARR11(3)        <-------MYC2     --------->ARR11(3)                        ----------->GT1  <---------AHL20(2)         ------------>OsbHLH66           -                        <----------ID1   --------->AHL20(2)       <---------ZAT2   <---------YAB1   <   aaacaaaaaatgtccgagagaaattagggaaaaacaaaacaaataaaatctgggtgtaggggagagagagctcgtgctcgtgattttgatatctatctct  14837900                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                 --------->CCA1(2)                                <---------ARR11(3)             <-----------GT1                                --------->ARR14(2)         <---------MYB52(1)                                <---------AGP1           ----------->GT1    <------NtERF2                                --------->AGP1        --------->ARR14(2)  <---------DEAR3(1)  <---------DOF5.7(2)           <---------ARR14(2)--------->ANAC55(2)   <---------ANAC58 -------->DOF5.7(2)             --------->ARR11(3)<---------ANAC55(2)   <---------ANAC58 ---------MYB52(1)             <---------CCA1(2) <---------LBD16 <---------YAB1               <------   tcgttatcgattttgaacatccacattgttcttagatctgaagaaaaaaaacacgggttctgttattacgatttgctcggcgattttgacaccaggcttt  14838000                                         ------>ZmHOX2a(2)                                       ----                                        <------ZmHOX2a(2)                                       -----                                       <-----------ARR10                                        <----                                       <---------AGP1                                          <-----                                       <---------ARR14(2)                                      ------                                       --------->ARR14(2)                                      <-----                                      <---------ARR14(1)                                       <-----                                <-------TEIL                        <---------DDF1            <------                               <------ZmHOX2a(2)             <---------ANAC58                --------                              --------->ARR14(2)             <---------ANAC46               ---------                              <---------ARR14(2)             <---------ANAC58              --------->LBD16                              --------->AGP1                <-------TEIL                  <---------ANAC46        <-------GAMYB        <---------At4g35610  <------NtERF2    <---------ETT(2)       <---------ANAC58   <----------DOF2           --------->At4g35610<---------DEAR3(1) --------->ETT(2)       <---------O2 ----DOF2     <---------At4g35610     <---------CCA1(2)   <---------ARR14(2)              <---------ANAC58   caattcttttcgttggaggtgattcgatttcagatccatcggatctaatctcggcgagtcgattcgtggtcgacatttttcaaaaactgctcgcgtggat  14838100                                                                                           <---------At4g35610 -->ZmHOX2a(2)                                            ---------->DOF2        <---------MYB52(1) ---->At4g35610                                         --------->REM1(2)       <-----------HVH21 -----At4g35610                                   <---------ARR14(2)         <---------At4g35610 ----ARR14(2)                                 --------->LBD16            <---------ARR11(3)--------->At4g35610 --->ARR14(2)                               <---------LBD16 --------->ICU4   --------->At4g35610<---- ----ARR11(3)                     --------->ANAC58--------->GLK1(2)<------ZmHOX2a(2)       --------->ZAT2 ----AGP1                   --------->RAP2.6(3)  <---------GLK1(1)--------->ARR14(2)       <---------ZAT2 ---CCA1(2)                --------->ARR14(2)<---------HSFB2a(2)  <---------ARR14(2)      --------->ARR11(3) --->ARR10                 <---------ARR14(2)--------->HSFB2a(2)  ------->TEIL <---------MYB46(3) >ALFIN1           <----------DOF2--------->ANAC58--------->ARR14(2)------>ZmHOX2a(2)   ----------->ARR10   ctgaagaagagacattgttgtcttttgtatatcggcactgaatttttctgggaatctgtgtaaagatggatccaatatcagcggttagcgaagagctggc  14838200  Previous    Next  AGI:  At2g35180.1    Description:  pseudogene, 60S ribosomal protein L37a, blastp match of 96% identity and 1.7e-35 P-value to GP|20161109|dbj|BAB90039.1||AP003335 putative 60S ribosomal protein L37a {Oryza sativa (japonica cultivar-group)} Range:  from: 14836944    to: 14837218    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g35190.1    Description:  NPSN11 (NOVEL PLANT SNARE 11); protein transporter. Identical to Novel plant SNARE 11 (NPSN11) [Arabidopsis Thaliana] (GB:Q944A9;GB:O82173); similar to NPSN13 (novel plant SNARE 13) [Arabidopsis thaliana] (TAIR:AT3G17440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63496.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727) Range:  from: 14837705    to: 14840398    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version