Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ------>ZmHOX2a(2)                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                  <---------ARR11(3)                                                 <------ZmHOX2a(1)                                             <------NtERF2                                            ------>NtERF2                           <------ZmHOX2a(2)                                            <---------DEAR3(2)                   ------>ZmHOX2a(2)                                           <---------At1g77200                  <------ZmHOX2a(2)         <---------ZAT14                   <---------DEAR3(1)                  --------->ARR14(2)      <---------ANAC46                 --------->At4g35610  --------->ANAC58   <---------ARR14(2)  <---------At4g35610               ====================HOX2a_HOX2a      --------->ARR14(2)  --------->At4g35610               <------ZmHOX2a(2)       --------->ANAC58 --------->LBD16  --------->ZAT2                   <---------ARR11(3)  ----------->HVH21 <---------ARR14(2)  <---------ZAT2                   --------->ARR11(3) --------->LBD16   --------->GLK1(1) -------->DOF2  <---------ZAT14   <---------GLK1(1)<------ZmHOX2a(2)    <---------GLK1(1)      <----- ----YAB1--------->ZAT14 <---------ANAC46<-----------HVH21 <---------LBD16 <---------LBD16<---------LBD16   attaagctgagtgaagagaacacagggacgtagaagagatcagcgtcggcaggatccgagacacggacaatcggagacccggatcgatcaacttcgggtt  14802300                                                                     ----------->HVH21                                                                     --------->At1g77200                                                                     --------->DEAR3(1)                                                                    --------->MYB46(3)                                                                 --------->TGA2(2)                                                                 ----------->HVH21                                                               --------->bZIP60(2)                                                               --------->O2                                                               <---------bZIP60(2)                                                               <---------O2                                                               --------->TGA1a                                                               <---------TGA1a                                                               --------->TGA2(1)                                                               <---------TGA2(1)                                                               <---------bZIP60(1)                                                               --------->bZIP60(1)                                                               --------->ANAC55(2)                                                               <---------ANAC58                 <-----------GT1                               <---------ANAC55(2)                --------->ARR11(3)                             --------->ANAC58                <---------ARR11(3)                             <---------ANAC58            ---------->DOF2                                   ----------->STF1        --------->HSFB2a(2)                                   <-----------STF1        --------->LBD16                                      <---------TGA2(2)        <---------HSFB2a(2)                                 ----------->HVH21      ------>ZmHOX2a(2)                                   ----------->bZIP910(2)     --------->ARR14(1)                           ----------------------->TaNAC69(2)     --------->CCA1(2)                           <---------ANAC55(2)--------->DEAR3(2)     ------>NtERF2    <---------ARR11(3)                        <---------GLK1(2)--------->ANAC58            <------NtERF2    --------->ARR14(2)                        <---------ARR14(2)<-----------HVH21          --------->LBD16    --------->AGP1                            --------->ARR14(2)<-----------TGA1          --------->DEAR3(1)    --------->ARR11(3)                      --------->LBD16 ----------->TGA1            --------->LBD16    <---------ARR14(2)                    <---------LBD16--------->ALFIN1               ------>NtERF2  ----------->ARR10                   ----------->HVH21<---------ANAC58                 <---------At4g35610 ---P<------ZmHOX2a(2)          <-----------RAV1(1)    <---------ANAC58                --------->ANAC46   gattaagatccgagaaaagataccactcgtgcatatgttgatgacccggatacttaagcgtggtgacgtcaccgacgggcttcttgattccgccgcgagc  14802400                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                         --------->REM1(1)                                                                                         --------->YAB1                                                                                       ------>ZmHOX2a(1)     <---------At4g35610                                      --------->ZAT6       ------->PIF5<-----    --------->ALFIN1         ------->TEIL                --------->TOE2(3)         <-------PIF5------  <---------ANAC58    <---------MYB52(1)   <---------------AtSPL8--------->STY1(1)--------->ANAC58  <---------ANAC58   --------->At5g28300   --------------->AtSPL8<---------STY1(1)--------->ANAC58 --------->ATHB12<-----------GT1    <---------LBD16      --------->TOE1(3)      <---------ALFIN1   gattgagtgctgctcgattaaaccgtaagtgaatctcttggggagattgtacatgtaaaccctaaccctaggctgaatcggagcacgtccttcatcatca  14802500                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58                                                                 <-             --------->ZAT2 ===============HOX2a_HOX2a                                            ---      --------->ANAC58      ------>ZmHOX2a(2)                <---------ANAC58                    <---      --------->ANAC46     ================HOX2a_HOX2a       <---------ANAC58                   -----     <---------LBD16       <------ZmHOX2a(2)                 <---------ANAC46                  <-----   <---------REM1(2)      <---------ARR14(2)                <------NtERF2                     ------- <---------ICU4  <------NtERF2                            <---------DEAR3(1)                 -------- ---YAB1     <---------At4g35610                        ------->GAMYB                   <---------ANAC46 -ICU4--------->ANAC55(2)--------->GLK1(1)          ----------->HVH21                 --------->MYB52(1) >YAB1--------->ANAC58   <---------GLK1(1)         <---------MYB52(2)                ----------->HVH21 ----ICU4    --------->At4g35610    <------ZmHOX2a(1)--------->MYB52(1)--------->AHL20(2)   <-------- --->YAB1<---------GLK1(2)--------->ARR14(2)    <----------ID1      <---------ICU4   ----------->TGA1   tcatcttcacggattagctggcgagggagatcggatgaggaagggagagagcgactaacggaggcgttgagaattacatagatggcgatgacggagacga  14802600                                   <<<<<<<<<<<<<<<<<LFY                                   ------>NtERF2                                   >>>>>>>>>>>>>>>>>LFY                                  --------->ANAC58                                  --------->ANAC58                                  XXXXXXXXXXXXXXXXXXXX>MIR841B                                  --------->ANAC46        <---------At4g35610     <---------ANAC58     <---------At4g35610        --------->ANAC46  <-------GAMYB                 <---------ANAC58 <---------MYB46(3)           <-----------GT1 -----NtERF2                --------->CCA1(2) --->NtERF2                <---------ARR14(2) ------DEAR3(1)            --------->ARR14(2)                                                      -- ---->ATERF1(1)            <---------ARR11(3)                          <---------At4g35610         <- ----ATERF1(1)             <-----------ARR10                           --------->At4g35610    ------- ---->HVH21                --------->ARR11(3)                 <---------TOE2(3)               <------ ->ATERF1(1)             ----------->ARR10                    <---------TOE1(3)             --------- -ATERF1(1)        <------ZmHOX2a(1)<------NtERF2   >>>>>>>>>TBF1    <-----------RAV1(2)    <--------   cggcgattgctgctcgtttgaggagggaagatttacgcgccattggagattgaagaagaaggttagggttttcaggtgagagattgaacaacttagctca  14802700                                                            <---------RVE1(1)                                                            --------->GLK1(1)                                                           <---------GLK1(2)                                                           --------->ARR11(3)                                                           <---------ARR11(3)                    ----                                                           --------->ARR14(2)                    <---                                                    --------->MYB46(3)                     ----------                       --------------->AGL15        <------NtERF2                         --------->DAG2                      <-----------------AGL3       --------->ANAC46                 <---------------AGL15                      <-----------------AGL2 <---------ANAC46                       --------->AHL20(2)                      ==============================================================================MADS_MADS        --------->At4g35610                  <---------ANAC58                    <---------AHL20(1)        <---------At4g35610          <---------MYB52(1)    <---------ARR14(2)    <---------AHL20(2)        *TSS          ----------------->AGL3 <---------ANAC58 --------->GLK1(2)  --------->AHL20(2) ----------->TGA1 <------MYB46(1)  --------->MYB52(2) ----------->RAV1(1)     --------->YAB1 -------- ------->YAB1     <---------MYB46(3)<-------GAMYB  --------->ANAC58          <---------AHL20(2)  ---- --------ICU4     <------MYB83 <---------ANAC58    ------>NtERF2            --------->AHL20(2)   <--- -->ZAT18       <---------MYB52(1) ----------->GT1 --------->ANAC58    ---------->ID1--------->AHL20(2) ---ZAT18      <-------GAMYB   <---------ANAC58   --------->RAP2.3(3) <-----------GT1<---------AHL20(2) >At4g35610   <---------MYB46(3)   <---------MYB46(3) --------->MYB52(1) <----------DOF2 ---------->DOF2 -At4g35610   <-----------RAV1(1) <-------TEIL  <---------ZAT18  <----------DOF2 --------->AHL20(1)   ctaatgacgaagatgactgttggttctaattttgggttcgttacatttcgtgcccccaacagatattctttttttctttttaataaatttataaagtaat  14802800    --------->TOE2(3)                           --------->YAB1    --------->YAB1                   --------->ATHB12   <---------YAB1                    -------->HAHB4         <---------YAB1  <---------ARR11(3)                <---------ATHB12      --------->YAB1  --------->ARR11(3)                --------->ICU4    --------->AHL20(2) --------->YAB1                 <---------YAB1  --------->TOE2(3) ----->AHL20(2)           <---------YAB1 --------->ATHB12 <---------ICU4 ------AHL20(1)           <---------TOE1(3)    <---------YAB1                                -------- ->GT1                    <---------TOE2(3)   <---------TOE2(3)                             <-------TEIL ->AHL20(2)--------->GLK1(2) <---------YAB1<---------WOX13(1)                              --------->AtLEC2 ----->AHL20(1)       --------->TOE2(3)<---------WOX13(1)--------->ICU4             ---------->DOF2 ------AHL20(2)       --------->YAB1<---------YAB1  <---------TOE2(3)             XXXXXXXXXXXXXXXXXXX   taattatcttaagaatttgttcaatcttaagattataaatgattgatttatgttaatgaattatgaaattagtcgattacccaagataaagacatgcata  14802900                                                   <---------------AtSPL8                                                   --------------->AtSPL8                                           <---------ANAC46                        <---------ANAC55(2)<---------ANAC58                        <----------DOF2                        --------->ANAC55(2)<---------ANAC58                 --------->ATHB51       -- ->YAB1     --------->YAB1             <-------GAMYB                       <---------YAB1<----------DOF2 X>MIR774B  <-----------GT1           <-----------RAV1(1)  <-----------ARR10<---------ICU4   <-------   ataggttttctgaattacaatccaatacataacaagaagactgttgcgagggatttgtacaaatctaatctctctacataattgtctttttcttttgggg  14803000                                                                               ======================                                                                               ======================                                                                               ------>ZmHOX2a(2)                                                                              =======================                                                                              <------ZmHOX2a(2)                                                                              =======================                                                                             <---------ARR11(3)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                             <---------AGP1                                                                             --------->ARR14(3)                                                                             --------->AGP1                                                                             <---------ARR14(3)                                                                             --------->ARR11(3)                                                                            <---------CCA1(2)     <--                                                                            <---------ARR14(1)    ===                                       ----------->GT1                     ----------->ARR10  -------   <----------ID1             --------->ALFIN1                         <---------PCF2         ------- -------->DOF2    <----------DOF2   --------->ALFIN1                   <---------PCF5   <---------At4g35610 --LBD16      ---------->ID1<-----------RAV1(1)                        --------->TCP20  --------->At4g35610   aaaaagaaacaaatttgtctcttttgtagaatgtgggagtgttgttacttagttatgctgtttatatgagatgggaccagatcttgagacagcaaaccta  14803100          ========================HOX2a_HOX2a          <------ZmHOX2a(1)    ==============================HOX2a_HOX2a    <------ZmHOX2a(1)                                                            --------->HSFB2a(1)   --------->ZAT18                                                             <---------ARR11(3) ==========HOX2a_HOX2a                                                 --------->SPL7 ====HOX2a_HOX2a                                                    --------->LBD16            <----- ====HOX2a_HOX2a                      <---------DAG2               --------->HSFB2a(2)        <------ ==========HOX2a_HOX2a       ------>ZmHOX2a(1)    <---------At4g35610  --------->DEAR3(2)     <------ ----ZmHOX2a(1)            ------>ZmHOX2a(2)      <---------ZAT2   <---------HSFB2a(2)        ------- =================================HOX2a_HOX2a     --------->ZAT2  <---------LBD16<---------HSFB2a(1) -->TOE2(2)                ----------->RAV1(2)    --------->At4g35610 --------->ARR14(2)<----------DOF2 -->TOE1(2)      <---------At4g35610  <----------DOF2         <---------ATHB12 --------->ARR11(3)   ggaagaggactaggacctgtgctgtttgatcctgaccctcctttatggctcgagctgtaatccaatggtccggaacgacgagaacttcccctttgtttgt  14803200  Previous    Next  AGI:  At2g35100.1    Description:  ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups. similar to ARAD2 (ARABINAN DEFICIENT 2), catalytic [Arabidopsis thaliana] (TAIR:AT5G44930.2); similar to ARAD2 (ARABINAN DEFICIENT 2), catalytic [Arabidopsis thaliana] (TAIR:AT5G44930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68074.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) Range:  from: 14800730    to: 14802708    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g35110.1    Description:  GRL/NAP1/NAPP (NCK-ASSOCIATED PROTEIN); transcription activator. Identical to Protein NAP1 (NAP1) [Arabidopsis Thaliana] (GB:Q5S2C4;GB:O82180;GB:Q66GU3;GB:Q6BDH4); similar to unnamed protein product [Vitis vinifera] (GB:CAO41971.1); similar to hypothetical protein OsJ_027019 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43536.1); similar to Protein NAP1 , putative [Medicago truncatula] (GB:ABN04850.1); contains domain SUBFAMILY NOT NAMED (PTHR12093:SF1); contains domain FAMILY NOT NAMED (PTHR12093) Range:  from: 14802794    to: 14810929    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version