Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------GLK1(1)              --------->GLK1(1)         ---------->DOF2        <------ZmHOX2a(1)     <---------LBD16     <-----------RAV1(2)                               ------>MYB83    ------>ZmHOX2a(1)                                  ------>MYB46(1) --------GLK1(2)                          ------>ZmHOX2a(1) ------>HSFB2a(1)                     <---------ARR11(3)                    <---------ARR11(3) -------HSFB2a(1)                     <---------ARR14(2)                    --------->ARR11(3)   ---- -HSFB2a(2)--------->ANAC58           --------->ARR14(2)             <----------DOF2<---------TOE2(3) >HSFB2a(2)--------->ANAC58 <---------ALFIN1      <-----------GT1  --------->At4g35610        -------   agattcctcaggaaagaaatctctcttgctccatctccagtatcctctctcttcaccttccattctctctgcttcaaagatttgttaatgaagaagagct  14753000                                                                                                <----                                                                                 <----------DOF2-----                                                                      --------->At4g35610       -----                                                                      <---------At4g35610  <--------- ------>DOF2                                                          <---------ZAT2  ------>ZmHOX2a(1) -->At4g35610      ---------->ID1       *TSS                          --------->ZAT2 --------->TOE2(3)   aaagagacaccatctaattttgttccattgtttgactagtagaagtttcagacagtttttttgtatttttgcagcttccctgactttcctcaactttgtg  14753100                                        --------->TGA2(2)                                       <-----------TGA1                                      <---------bZIP60(1)                                      --------->bZIP60(1)                                      --------->bZIP60(2)                                      --------->TGA1a                                      <---------ANAC55(2)                                      --------->ANAC55(2)                                      --------->ANAC46                                      --------->ANAC58                                      <---------O2                                      --------->ANAC58                   <------NtERF2                                      ====================================bZIP_DOF         <---------                              --------->ARR14(2)                       <---------RAP2.6(2) ----------                            ----------->ARR10                          <---------ANAC58  <---------MYB52(1)                    <---------ALFIN1  --------->O2                     <---------ANAC58<---------ANAC58                 ------>MYB83 <---------GLK1(2)--------->YAB1    --------->ATHB12      <---------ANAC58 -----ZAT14      ------>MYB46(1)      --------->REM1(1)         <---------YAB1      <---------MYB52(1) ---->ZAT14    --------->AtMYB61     <-----------STF1  <---------YAB1  <---------ANAC46<---------ANAC46 ---->ZAT18XXXXXXXXXXXXXXXXXXXX>MIR844*<-----------HVH21        --------->ICU4  <---------At5g28300 -DOF2  --------->YAB1   ----------------------->TaNAC69(2)    <----------DOF2 <-----------GT1   tactgtccattcataaacctccccacttgttagatttgctacgtcaccttcataactctcattgtctttattggcgtcttcttaccgtttcgtttagtac  14753200                --------->YAB1                                         <---------AHL20(2)                <---------ICU4                                      ----------->GT1               --------->ICU4                                       --------->YAB1            <-------TEIL    --------->YAB1                         ----------->GT1     --------->AtLEC2       --------->ANAC55(2)                    <---------YAB1   --------->YAB1  --------->YAB1                           ----------->GT1                    <-----  <---------ATHB12<---------YAB1              <-----------GT1--------->At5g28300              ------- ------AtSPL3  <---------YAB1            <----------DOF2  --------->At4g35610                 <------ ----->AtSPL8--------->YAB1<-------TEIL  <---------DAG2 --------->ZAT18--------->AHL20(2)------>ZmHOX2a(1)   ttcaaccatgaaaattcatgatgataacatacataattcagtgcttttttactcttagggggctgtaaaatgataaattgtcatattagtccttcagatt  14753300                                                                                      *TSS         ------->TEIL                                                                ================         <-------TEIL <----------DOF2                                                ================     --------->ARR11(3)   <-----------GT1                                            <------ZmHOX2a(2)     --------------->AtSPL8                                                    --------->LBD16     <---------------AtSPL8------------>CBF                                    <-----------HVH21 ---------->DOF2    ------>ZmHOX2a(1)                                  <---------GLK1(2) ----RVE1(1)   <-----------GT1              <-----------GT1            --------->ARR11(3) -->ARR11(3)  <---------AHL20(2)           --------->AHL20(2)          <---------ARR11(3) ---GLK1(2)  --------->AHL20(2)        --------->AHL20(2)   <---------LBD16  <---------LBD16   tttaaaagatgtacatttaatcctcttttctcaattcgtcataaattaacttcagtttatactcagggttttagattttcccgtgagatcgaatttgatc  14753400                                            --------->DEAR3(1)                                            --------->RAP2.3(2)                                           --------->ATERF1(1)                                           <------NtERF2                                           --------->RAP2.3(1)                                           --------->RRTF1(1)                                          <---------ATERF1(1)                                          ------>NtERF2                                          <---------RAP2.3(1)                                          --------->ABI4(1)                                         --------->RAP2.3(3)                                         --------->RRTF1(2)                                         --------->ATERF1(2)                                         --------->RRTF1(3)                                         --------->RAP2.3(2)                                         <---------ATERF1(2)                                         <---------DEAR3(1)                                         <---------ALFIN1                                         --------->DEAR3(1)                                        --------->RAP2.6(1)                                        --------->RRTF1(1)                                        <---------ABI4(2)                                        <------NtERF2                                        --------->ATERF1(1)                                        --------->RAP2.3(1)                                        --------->DEAR3(2)                                        --------->ORA47(2)                                       --------->ABI4(2)                                       <---------DEAR4(2)                                       <---------RAP2.6(1)                                       <---------RRTF1(1)                                       <---------ERF1                                       ------>NtERF2                                       <---------ATERF1(1)                                       <---------RAP2.3(1)                                       <---------ORA47(2)                                      --------->DEAR3(1)                                      <---------RAP2.3(2)                                      --------->RAP2.3(2)                                      <---------DEAR3(1)                                     --------->RAP2.6(1)                                     --------->ERF1                                     --------->ATERF1(1)                                     <---------ABI4(2)                                     --------->RAP2.3(1)                                     --------->ORA47(2)                                     <------NtERF2                                     --------->RRTF1(1)                                     --------->DEAR4(2)                                    <---------RAP2.3(1)                                    <---------DEAR4(2)                                    <---------ORA47(2)                                    <---------RRTF1(1)                                    <---------ERF1                     --------->At4g35610--------->ERF1                     <---------ZAT14<---------ATERF1(1)                     <---------At4g35610--------->DEAR4(2)                     --------->ZAT18------>NtERF2                  <---------ANAC58  <---------RAP2.6(1)                                     ---------                  <---------ANAC58 <---------RAP2.3(2)                                      ---------              --------->CCA1(2)    <---------RRTF1(2)                             ------>NtERF2             --------->ARR11(3)    --------->ALFIN1                              <---------ALFIN1             <---------ARR11(3)    <---------DEAR3(1)                      <---------GLK1(2)---------             --------->ARR11(1)    <---------RRTF1(3)                  <-------TEIL<------NtERF2             <---------ARR14(2)    <---------RAP2.3(3)         <---------LBD16   --------->DEAR3(1)             --------->ARR14(2)    <---------RAP2.6(2)       <---------ARR14(2)<---------ATERF1(1)           ----------->ARR10       <---------DREB2C(2)       --------->ARR14(2)----------------------          <------ZmHOX2a(1)     --------->DAG2           <---------At4g35610  --------->ANAC58       <------ZmHOX2a(1)       ---------->DOF2 --------->STY1(1) --------->LBD16<------NtERF2 =============HOX2a_HOX2a --------->At4g35610 <---------MYB52(1)<---------ANAC46--------->ATERF1(1) ================HOX2a_HOX2a  ---------->DOF2------>NtERF2  <------ZmHOX2a(1) --------->ANAC58      <   agtgagagaggaggagatatgggtgctcagaagaaaggcggcgccgccgctagggtttcagaggatgcggaggtacagagtcgccaccgattgcaagcaa  14753500                                   --------->LBD16                                  --------->ANAC55(2)                         <---------HSFB2a(1)                     --------->ANAC58                     --------->ANAC58   --------->TOE1(3)             --------->ARR14(2)   --------->ANAC58       --------->ETT(2)  --------->HSFB2a(1)       --------->ATERF1(2)        --------->ANAC46       <---------ETT(1)  <---------HSFC1(2)                                              --------->ATHB12       ----------->HVH21 --------->HSFC1(2)                                          --------->ATHB12       <---------ATERF1(2)    <---------SPL7   --------->ANAC58                     <---------YAB1 >ANAC46------>NtERF2--------->ANAC46  --------->ZAT6                               <---------ATHB12 >ANAC58<---------RAP2.6(3)  <---------ANAC58  --------->ANAC58                   <---------At4g35610 >ANAC58----------->RAV1(1)  <---------ANAC58<<<<<<<ZML2                   <---------TOE1(3) ->TaNAC69(2)<---------ARR14(2)   --------->ANAC58  ---------->DOF2 <---------MYB52(1) <---------WOX13(1) ---------YAB1      ------>NtERF2 <---------ANAC55(2)       <---------ZAT6 <---------TOE2(3)    <XXXX   ttcttcttgccgacagtttcgccacgaaatttcgtcccgtaaccctagaacgcccaaaggtactgttaccgatagttaatgttccgatgattgattacac  14753600                --------->ZAT2                <---------At4g35610                --------->At4g35610            --------->ARR14(2)                                                     --------->GLK1(1)            <---------ARR11(1)                                                ----------->GT1            ------->TEIL                                                  <---------ARR14(2)            --------->GLK1(2)                                             <---------ARR11(3)            <---------ARR14(2)                                            --------->ARR11(3)           <---------CCA1(2)                     <---------ZAT18          --------->GLK1(2)       <---------ANAC46                          <---------At4g35610      --------->ARR14(2)  <---------AtLEC2                          <-------GAMYB    <-----------RAV1(2)   <---------GLK1(1)  <---------ANAC58                         ==============================RAV<---------LBD16  <---------ANAC58--------->HSFB2a(2)      <-----------RAV1(1)           --------->GLK1(1)     ------ XXXXXXXXXXXXXXXXMIR171B/C  <------ZmHOX2a(1)<---------MYB52(1)          <---------GLK1(1)     <-----   attggcatggctcgaatctgctggaatagaggaggttttcgtcttctgttgtgctcattcgatgcaggttatcgaatatctggagaaatccgagtggtat  14753700                                                                                           --------->TGA1a                                                                                           <---------O2                                                                                  ===================MYC_MYB                                                                    <---------ANAC46       <---------TGA1a                                                                    <---------ANAC55(1)    --------->O2                                                               <---------ANAC58   ------->GAMYB            <---------ANAC46                          <---------GLK1(1)          --------->MYB46(3)            <---------ANAC58                <---------ICU4     <---------ANAC58----------->RAV1(1)            <---------ANAC58              <-----------HVH21==========================================bZIP_DOF --->ARR14(2)                        --------->GLK1(1)<---------At4g35610      --------->MYB52(1) ----ARR14(2)          --------->ATHB12  --------->WOX13(1)<----------DOF2    --------->MYB46(3)   tcgcatccaaacttgcttgtgagaacgattgagtcgcacaaatccatcagtgctggagatgctttgcgttacatgtatgaacaacagacagagacgtctc  14753800                              --------->ARR14(2)                              <---------ARR14(2)                            ----------->ARR10                                                     ---                       --------->MYB52(2)    --------->ANAC46                            ---------->DOF2             <---------ANAC58 <---------ARR11(3)                                      >>>>>>>>>TBF1 <-------TEIL<---------ANAC58 --------->ARR11(3)                                  <------ZmHOX2a(1)   agattcaaggtgatttcgttcttgttagtggagatactgtgagtaatatgccacttgctgatttgattcaagagcatagagagaggaagaagaaagatga  14753900  Previous    Next  AGI:  At2g34960.1    Description:  CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); cationic amino acid transmembrane transporter. similar to CAT8 (CATIONIC AMINO ACID TRANSPORTER 8), cationic amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G17120.1); similar to Os01g0209800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042365.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41927.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42080.1); contains InterPro domain Cationic amino acid transporter (InterPro:IPR015606); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino Range:  from: 14751116    to: 14753040    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g34970.1    Description:  eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein. similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G02270.1); similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G18300.1); similar to Os02g0812400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048478.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ74618.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48128.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835 Range:  from: 14753386    to: 14755860    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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