Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->YAB1                                                   <---------YAB1                     --------->AHL20(2)                                               <---------GLK1(2)                      <---------AHL20(2)                                        <---------MYB59                 <---------AHL20(2)                                      -------->P--------->GLK1(2)      <---------AHL20(2)                                     --------->MYB52(1)<---------ICU4  --------->AHL20(2)                      <---------HSFB2a(2) --------->MYB52(1)           --------->AHL20(1)                      --------->HSFB2a(2) ------>MYB83 --------->YAB1  <---------AHL20(1)      --------->At5g28300  ----------->GT1------>MYB46(1) --------->YAB1--------->ATHB12    <-------- --------GT1    <---------ARR11(3) <---------MYB52(2) <---------YAB1 ------->TEIL  <----------DOF2   aacatcaccgtaatacaaaatcatctagaccgataaaactaacctaacacattctgataataacaaatatgaatttattgattttcttttaattaagaat  14709200                                                              <---------ZAT18                                                   --------->ETT(2)                                                   <---------ETT(2)                                              ------>MYB46(1) --------->ZAT14                                              ------>MYB83    <---------ZAT14                                            <---------------AGL15                                  <-                                            --------------->AGL15                             -------                    <---------ARR11(3)     ==========================================================                    --------->ARR11(3)     ----------------->AGL3                             <------           ------>MYB46(1)                 ----------------->AGL1                          --------->ZAT6           ------>MYB83                    ----------------->AGL2                   <---------ANAC46- -TOE2(3)------->GAMYB <----------DOF2--------->ZAT6          --------->ZAT18    <-----------RAV1(1)<   agctcgttcaaccaaatgttgacatcttttttttttttgaacactaccaaatgtagacatctagtacactaattcaaccatgtctgtcgtctaatactat  14709300             --------->CCA1(2)      <---------ANAC46                                                                --------->ANAC58      <---------ANAC58                                                                --------->ANAC46      <---------ANAC58                                                                --------->ANAC58 --------ANAC46                                                                      ------->GAMYB -------->AGL15 ----------->GT1                                                    --------->ZAT14 =========MADS_MADS       <---------AHL20(2)                                     --------->ANAC46 ---------AGL15<---------YAB1                                                 --------->ZAT18      -- -------->HSFB2a(2)    --------->AHL20(1)        <---------YAB1             --------->At4g35610 ----- ---------HSFB2a(2)    <---------AHL20(1)  --------->ANAC55(2)           ---------->DOF2       <-----   ttcgagtagtgtgtgatatgcttaatatataaaaaaaacttgttcacgtttctgattttaaaacatagactgaccaaaagctcacaacacacaactagat  14709400                                                                                ----------->GT1                       ----------->RAV1(2)------>NtERF2                  <---------ANAC55(2)        <------ZmHOX2a(1)     ----------->GT1  --------->ANAC58          <---------ANAC46     <---------LBD16  --------->GLK1(2)   --------->LBD16                <---------ANAC58     <-----------RAV1(2)   <---------GLK1(2)   --------->ANAC58          <---------ANAC58          <- -------->DOF2        ------->TEIL    <-----------GT1               ----------->GT1                -- ---->CCA1(2)        --------->ARR11(3)  --------->RAP2.6(2)        <---------bZIP60(1)    --------->ARR11(3) ----ARR11(3)    ---------->DOF2<---------MYB52(1)                  --------->bZIP60(1)---------->DOF2   ataaagcccaggagtcaaacaaagaacctgattcgttattttgccgcacaaggcccaaatcaaattagtgatgttacttgaacagttcaaaaagaactgg  14709500                                                                                               ------                                                                                           --------->GLK1(1)                                                                                      ----------->GT1                                                                                    <---------At4g35610                                                         <---------ANAC58           --------->ZAT2                                    <---------YAB1       <---------ANAC58           <---------ZAT2  <---------YAB1                 <---------YAB1  <---------MYB52(1)*TSS             --------->At4g35610 --------YAB1               ----------->GT1 -------->P<----------DOF2              --------->GLK1(2)x ------->ICU4           --------->MYB52(1) <-----------GT1 <---------MYB52(1) --------->ANAC46 <-----   gattattatgcattcagtttataacttaaggggttattatgttattaacccgtttactttcgtttggattttggaattagacgcgaagctgtgaaatcta  14709600                                  >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1          >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1     >>>>>>>>>TBF1       >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   >>>>>>>>>TBF1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1  >>>>>>>>>TBF1    >>>>>>>>>TBF1  >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ANAC58       <---   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  -------- >>>>>>>>>TBF1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1      --------->ANAC58   <------- --->HSFB2a(2)  >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   >>>>>>>>>TBF1          -------- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <------- ----HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>TBF1  >>>>>>>>>TBF1<-----------HVH21====   gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcaatgtcagccatgggagcag  14709700                                                                                       --------->LBD16                                                                              =======================                                                                              ------>MYB83                                                                              -------->P--------->LBD16                                                                             <---------ALFIN1                                                                             ------>NtERF2         --    <------ZmHOX2a(2)                                                    ------>ZmHOX2a(2)        ---   <-----------HVH21                                                    <------ZmHOX2a(2) ---------->DOF2   <---------ARR11(3)                                                  <---------ARR11(3) =========== ---ZmHOX2a(1)                                                   ------->GAMYB------>MYB46(1)    <--- ->At4g35610                                                     ==================================== --ZAT2                                                  <------ZmHOX2a(2)  --------->DEAR3(1)------- ->ZAT2          --------->TOE1(3)               --------->MYB52(1)    --------->ARR14(2)<------NtERF2 --At4g35610     --------->TOE2(3)       --------->At4g35610  ----------->RAV1(1)     <---------LBD16 ==========HOX2a_HOX2a                   <---------At4g35610 --------->MYB46(3)--------->MYB46(3)----   gaccagatcacctcttcaacctcagaaacaatttctatttgggagcttatcaaacggcgatcaacaacagcgagatcgccaacctctcgccggaaaacgc  14709800    --------->TGA1a    <---------ANAC55(2)    ===============================================MYC_MYB    --------->ANAC55(2) =============MYC_MYB ------->ALFIN1                          <---------MYB52(1) ------>LBD16                       --------->DEAR3(1)                                        <------ =============bZIP_DOF           --------->DEAR3(1)                        <---------ICU4    -------- ------ANAC46             ------>ZmHOX2a(2)        ----------->GT1<---------ICU4            <-------- =============MYC_MYB    <------ZmHOX2a(2)  <---------At4g35610   --------->YAB1            --------- -->ANAC46              --------->ARR14(2)  --------->At4g35610  <---------ATHB12      <----------DOF2 ----->DEAR3(1)         <---------ARR14(2)<--------P           --------->YAB1 --------->ARR11(3)   cgtggaacgtgactgtctcgtcttccgatcttacatcgccctcggtagctatcaggttacttctctaatcatatcgataatgtcttcttctttagattcg  14709900                                                                                        --------->ANAC58                                                                                        --------->ANAC46                                                                                        --------->ANAC58                                                                                      ---------->DOF2                                                                                --------->ZAT14 <---------ANAC55(1)                                                            --------->ZAT18 --------->ANAC55(2)                                                            <---------ZAT18 <---------ANAC58                                                          <---------MYB52(1) <---------ANAC46                                                        --------->RAP2.6(2) <---------ANAC55(2)                                                     --------->RAP2.3(2) <---------ANAC58                                                        --------->ANAC46 -TEIL                              <---------ANAC46                   <---------At4g35610 ->ARR14(1)                       <---------ANAC58                     --------->At4g35610   -------- -GLK1(2)                         <---------ANAC46          <------ZmHOX2a(2) --------->REM1(1) >ARR11(1)     ------>ZmHOX2a(2)  <---------ANAC58 <---------YAB1  ------->TEIL <---------ZAT14   attacgttttgttttgatctgttcttccaaattttggtgtgtataagcttgttatcagtgagatcgatgaatcagccgctactccactacaagcagtcaa  14710000                                             <----------DOF2                                        <---------At5g28300                                        --------->RAP2.6(3)                                       <-----------GT1                                       <---------ICU4                                      --------->ICU4        --------->ANAC55(2)                                 ----------->GT1            --------->ANAC46           ------->TEIL         <---------TOE1(3)           --------->ANAC58          <---------CCA1(2)     --------->DAG2      <---------ANAC58   --------->ANAC46             --------->MYB59     <---------ANAC58     ---------->DOF2  ------>ZmHOX2a(1)             <---------TOE2(3)   <---------ANAC46  ----------->GT1 ->WRKY18(1)            ------>ZmHOX2a(1)<---------RAP2.6(2)--------->ANAC58     <-------TEIL       -   actcctcgctatgtatctatcgactcctcaaaataaggtaattacggctttgattcgtgttcacgaaacatgttgtaaagagattcaaatgcttatatgg  14710100  Previous    Next  AGI:  At2g34840.1    Description:  coatomer protein epsilon subunit family protein / COPE family protein. Identical to Coatomer subunit epsilon-2 [Arabidopsis Thaliana] (GB:O64748); similar to coatomer protein epsilon subunit family protein / COPE family protein [Arabidopsis thaliana] (TAIR:AT1G30630.1); similar to Os04g0612600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053847.1); similar to coatomer epsilon subunit [Medicago truncatula] (GB:CAI29264.1); contains InterPro domain Coatomer, epsilon subunit; (InterPro:IPR006822); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) Range:  from: 14709567    to: 14711432    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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