Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->WRKY12                                                                        <---------MYB52(1)                                                                      --------->ATHB12        <------                                                                      <---------MYB46(3)      <------                                                                     <-------TEIL             -------                                                                   <---------ARR14(2)    --------->ANAC46                                                                   --------->ARR14(2)    <---------TOE2(3)                                      --------->DEAR3(1)  <---------AHL20(2)          ------>ZmHOX2a(2)                                     --------->ATERF1(1)  --------->AHL20(2)         <------ZmHOX2a(2)                              ----------->RAV1(2)         --------->AHL20(1)         --------->CCA1(2)                             -------->P    <---------MYB52(1)   <---------TOE2(3)   --------->ARR11(3)                            ------->GAMYB<---------MYB46(3)    <-----------GT1      --------->AGP1             <----------ID1--------->MYB46(3)             <---------AHL20(1)        <---------ARR11(3) <---------TOE2(3)         <---------MYB111(2)            --------->ARR11(3)       --------->GLK1(1) ------At4g35610           <---------MYB55(2) *TSS        <---------ARR11(3)     --------->LBD16 ----->At4g35610  ---------->DOF2<-----------HVH21 --------------------->WRI1    --------->HSFB2a(2)   gctaatgtatgaagagagccaaaagagcaacaacctggcacagccgttgttttttttgaatatattgacgattcgttggcctccgagatctaaggcatct  14672800                                         <---------MYB46(2)                                         --------->MYB46(3)                                         --------->DEAR4(1)                                --------->AHL20(1)                                <---------AHL20(1)                                ------->GAMYB                                --------->AHL20(2)                               --------->ANAC58                                <---------ARR11(3)                               --------->ANAC58                                --------->ARR11(3)                               --------->ANAC46                               --------->CCA1(2)                                ------>MYB46(1)                 --------->GLK1(2)       --------->DREB2C(2)                    ------>MYB83         ------->GAMYB        --------->ARR11(3)                              --------->AtMYB61      --------->MYB52(1)      <---------ARR11(3)                              --------->DEAR3(1)     <---------WRKY38(1)<---------HSFC1(1)           <-----------GT1       --------->ANAC46    <---------ATHB12    --------->HSFB2a(2)------>MYB46(1)                 --------->ANAC58   --------->ANAC58     --------->HSFC1(1)--------->ORA47(1)               --------->ANAC58   --------->ANAC58     <---------HSFB2a(2)------>MYB83                  --------->ANAC58 ---At4g35610   <---------ARR14(2)       --------->DEAR3(1)              <---------ALFIN1 ---CCA1(2)     --------->ARR14(2)      --------->ANAC46                 --------->ANAC46 -->At4g35610   <---------GLK1(2)       --------->DEAR3(2)               --------->ANAC58   ctcacaatcaacggtccagattccatctagaagatatattacaccgaccttgttttctctatctaattctcacacacacaccaacgcaaacctccaaaac  14672900                                                                     --------->MYB52(2)                                                                    <-------TEIL                                                               <-----------RAV1(2)                                                            --------->WOX13(1)           <-------TEIL                                    <-------TEIL      ------>NtERF2                     <---------ANAC58  <------ZmHOX2a(2)    <------NtERF2            <---------GLK1(2)           --------->ARR11(3)                     <----    <---------DEAR3(1)       --------->ARR14(2)          <---------ARR11(3)       <---------ARR11(1)   <------NtERF2             <---------ARR14(2)          --------->AGP1           ------->TEIL  -----   --------->LBD16        <------NtERF2 <---------ANAC58--------->GLK1(1)         <-----------ARR10 -  <---------DEAR3(1)    <---------DEAR3(1)             ----------->ARR10          --------->GLK1(2)-- <---------LBD16--------->YAB1--------->GLK1(2)    --------->At4g35610           <---------ARR14(1)<-   agggccggggcgattcattcacaatctcggcgattctctcttccgtctcgagtcgctgagatccatcaggttcgtttctattcgaatctattctcttgaa  14673000            <----------DOF2        <-----------GT1  --------->ARR14(2)                                  <---------GLK1(1)  <---------ARR14(2)                               <---------TOE2(3) -----ARR14(2)                          --------->HSFC1(1)                                   <------- ---->ARR14(2)                          --------->HSFB2a(2)                            ----------->GT1 -------->LBD16  ------>ZmHOX2a(1)      <---------HSFB2a(2)         <---------TOE2(3) ------>ZmHOX2a(2) ------->ANAC55(2)                      <---------HSFC1(1)    --------->ATHB12 <---------ANAC46 --------ANAC55(2)                     <---------LBD16--------->GLK1(1)      <---------MYB46(3)    <-   tccgtatttgtttcctttcctctctagatagatttcatttttctggaaacattgagatttccattgatttgatgtttagtggtttagatcggataatttt  14673100                                                                                             --------                               --------->TOE2(3)        <------------CBF            <-----------RAV1(1)                               --------->YAB1          *TSS                         <---------MYB46(3)                             <---------ARR11(3)--------->ANAC58                   <------------CBF  <                      <---------ICU4           --------->ANAC55(2)             ------------>CBF     <                      --------->YAB1           --------->ANAC46       --------->AHL20(2)  --------->HSFB2a(2) --YAB1              <---------ATHB12          --------->ANAC58----------->GT1<XXXXXXXXXXXXXXXXXXXXMIR780.1 --------YAB1  --------->MYB52(1)      <----------DOF2<---------YAB1 --------->AHL20(2)   <---------HSFB2a(2)   tgttattgactctcaaaaaacgaatcataactatcttaaaactttgtttacgcattgttattgaaggctaaataaaaaatgctcaattgttgctagaaag  14673200                       --------->AHL20(2)                       <---------AHL20(2)                      --------->AHL20(1)      <---------HSFB2a(2)                                         --------->ATHB12      --------->HSFB2a(2)  <---------AHL20(2)                   <---------WOX13(1)           --------  --------->ALFIN1    --------->AHL20(2)                   --------->YAB1           <----------DOF2 -->DOF2              <---------AHL20(1)                --------->YAB1           <---------ARR11(3) ------MYB83          <---------AHL20(2)             ----------->RAV1(1)         --------->ARR11(3) ------MYB46(1)----------->GT1        <------------CBF------------>CBF       ---------->DOF2 --------   gaaggtgtctcgaaaacatgtgaatttattttttgagcctcattgtttctcactgcaacaatagtgaatgattcaattgaaaagaacttttggttaagcc  14673300                                                                                                   <-                                                                                                   <-                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)      <----------DOF2        ======================================================================MADS_MADS  ---------->ID1             <---------------AGL15                                <---------WOX13(1) <-----------GT1  --------->ANAC55(2)      <---------ANAC46<---------ANAC58      <-----------------AGL3 ->ANAC58         <---------ANAC55(2)<------ZmHOX2a(1)     <---------ANAC58  <---------At4g35610   <- ->ANAC58     <---------GLK1(2)    --------->MYB59         --------->TOE2(3) <-------GAMYB  <--------P   atttttctctttaatagattatgtgtctcaactcaattaggaactgtgtgtttttttgtttccttgatgttaacttgtgagttgatttatttgggtagtt  14673400                      <---------PCF2                      --------->TCP15(1)                      <---------ARR14(2)                     <------MYB46(1)                     <------MYB83                    <---------MYB46(3)                    --------->MYB55(2)                   --------->ALFIN1                   <---------ANAC46                 --------->MYB55(2)              <------MYB83<---------HSFB2a(2)              <------MYB46(1)                                                            <<<<<<<<<<GT-3b             --------->MYB111(1)                 <---------At4g35610             <---------YAB1         <---------AHL20(2)  <---------ANAC46    <---------GLK1(1)             --------->ATHB12        <---------AHL20(1)--------->HSFB2a(2)    --------->ZAT2                -------->HAHB4        --------->AHL20(1)------>ZmHOX2a(1)      --------->GLK1(1)             <---------ICU4       <---------AHL20(2)<---------LBD16         <---------ZAT2               <---------ATHB12 --------ANAC58  <---------MYB46(3)              --------->At4g35610          --------->ICU4 --------ANAC58 --------->ALFIN1     --------->ATHB12                     <---------AHL20(2)      <-- --------ANAC46 <---------AtMYB61   --------->ICU4                        --------->AHL20(2) <-------   tacttgtatatatatttggtggtgggtcctggagggaaatgagtgagagggagctctgttcatacattctatgtttttaaatgattagtatttttctttc  14673500                                                                                       --------->YAB1                                                                                      <--------------                                                                                     <---------TOE2(3)                                                                                     <---------YAB1                                                                                    <---------AHL20(2)          <---------DAG2                                                            --------->AHL20(2)          <----------DOF2                                   --------->ATHB12        --------->YAB1         <---------ANAC58                                  --------->AHL20(2) <------MYB83     <---------ANAC58          <----------DOF2             <---------AHL20(2) ----------->GT1     <---------ANAC58        ========================================================================    <---------ICU4           --------------->AGL15         <---------YAB1     <------MYB46(1)       < -------At4g35610     <------ZmHOX2a(1)      <---------AHL20(2)              --------->MYB59        - ---DOF2 <---------ANAC58   <-----------------AGL2 ----------->GT1           --------->MYB46(2) -----   atctaatacttgctttttgtgctaggaatttcgatttttgggactaatttatcgagtatatataattggataagtgagtttggtattaatattaagagca  14673600           <---------ANAC58      <-------GAMYB     --------->MYB52(2)     <---------MYB46(3)     <------MYB46(1)     <------MYB83   <--------P <------MYB46(1) <------MYB83                                                         <-------TEIL -AGL15  --------->ARR11(3)                                          --------->CCA1(2) =MADS_MADS<---------ANAC58      ---------->ID1                      --------->GLK1(2)           <--- ---------TOE2(3)            ----------->RAV1(2)                  <---------YAB1                 ---- -------->MYB59         --------->ZAT14                     --------->ICU4                 --------->YAB1 ---->WOX13(1)    --------->MYB52(1)                        <---------YAB1                <---------YAB1   attaggttggttatcttgccaaacagtagacccctgtcgttttcttagtcatttaagaagtaatgcttaagattcaggcctctaatctggttatgatagt  14673700  Previous    Next  AGI:  At2g34760.1    Description:  pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays} Range:  from: 14671750    to: 14673155    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g34770.1    Description:  FAH1 (FATTY ACID HYDROXYLASE 1); catalytic. similar to fatty acid hydroxylase, putative [Arabidopsis thaliana] (TAIR:AT4G20870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42586.1); contains InterPro domain Fatty acid hydroxylase (InterPro:IPR006694) Range:  from: 14672746    to: 14675329    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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